Lu Zhang

20 papers Journal 14Unranked 6
YearRankTypeTitle / Venue / Authors
2026 J jnl
stDyer-image improves clustering analysis of spatially resolved transcriptomics and proteomics with morphological images.
Bioinform.
Ke Xu, Xin Maizie Zhou, Lu Zhang
2025 J jnl
DBNX: A Machine Learning Method for Ensembling Polygenic Risk Scores and Non-Genetic Factors.
IEEE Trans. Comput. Biol. Bioinform.
Xiangzhe Yuan, Chonghao Wang, Shuqin Zhu, Lu Zhang
2025 J jnl
Mitigation of multi-scale biases in cell-type deconvolution for spatially resolved transcriptomics using HarmoDecon.
Bioinform.
Zirui Wang, Ke Xu, Yang Liu, Yu Xu, Lu Zhang
2025 J jnl
RAPID: Reliable and efficient Automatic generation of submission rePortIng checklists with large language moDels.
J. Am. Medical Informatics Assoc.
Zeming Li, Xufei Luo, Zhenhua Yang, Huayu Zhang, Bingyi Wang, Long Ge, Zhaoxiang Bian, James Zou, Yaolong Chen, Lu Zhang, Ye Wang, Haodong Li, Di Zhu, Yuanyuan Yao, Dongrui Peng, Honghao Lai, Jie Zhang, Fan Wang, Minjie Duan, Yueyan Li, Shilin Tang
2025 J jnl
TRAFICA: an open chromatin language model to improve transcription factor binding affinity prediction.
Bioinform.
Yu Xu, Chonghao Wang, Ke Xu, Yi Ding, Aiping Lyu, Lu Zhang
2024 J jnl
A multi-modal deep language model for contaminant removal from metagenome-assembled genomes.
Nat. Mac. Intell.
Bohao Zou, Jingjing Wang, Yi Ding, Zhenmiao Zhang, Yufen Huang, Xiaodong Fang, Ka Chun Cheung, Simon See, Lu Zhang
2024 — conf
Integrated analysis of gut microbiome compositional and genomic alterations reveals strain diversity and actionable biomarkers across multiple colorectal cancer cohorts.
BCB
Chao Yang, Jingjing Wang, Lu Zhang
2024 — conf
Med-PRSIMD: Enhanced Complex Disease Risk Prediction through Integrative Analysis of Multi-Type Data and Medical History Records.
BCB
Zeming Li, Yu Xu, Debajyoti Chowdhury, Hip Fung Yip, Chonghao Wang, Lu Zhang
2023 J jnl
A comprehensive investigation of statistical and machine learning approaches for predicting complex human diseases on genomic variants.
Briefings Bioinform.
Chonghao Wang, Jing Zhang, Werner Pieter Veldsman, Xin Zhou, Lu Zhang
2023 J jnl
Accurate and interpretable gene expression imputation on scRNA-seq data using IGSimpute.
Briefings Bioinform.
Ke Xu, Chinwang Cheong, Werner Pieter Veldsman, Aiping Lyu, William K. Cheung, Lu Zhang
2023 J jnl
Benchmarking genome assembly methods on metagenomic sequencing data.
Briefings Bioinform.
Zhenmiao Zhang, Chao Yang, Werner Pieter Veldsman, Xiaodong Fang, Lu Zhang
2023 J jnl
Benchmarking multi-platform sequencing technologies for human genome assembly.
Briefings Bioinform.
Jingjing Wang, Werner Pieter Veldsman, Xiaodong Fang, Yufen Huang, Xuefeng Xie, Aiping Lyu, Lu Zhang
2022 — conf
A machine learning model for disease risk prediction by integrating genetic and non-genetic factors.
BIBM
Yu Xu, Chonghao Wang, Zeming Li, Yunpeng Cai, Ouzhou Young, Aiping Lyu, Lu Zhang
2022 J jnl
dynDeepDRIM: a dynamic deep learning model to infer direct regulatory interactions using time-course single-cell gene expression data.
Briefings Bioinform.
Yu Xu, Jiaxing Chen, Aiping Lyu, William K. Cheung, Lu Zhang
2021 — conf
An ensemble deep learning framework to refine large deletions in linked-reads.
BIBM
Yunfei Hu, V. Mangal Sanidhya, Lu Zhang, Zhou Xin
2021 J jnl
DeepDRIM: a deep neural network to reconstruct cell-type-specific gene regulatory network using single-cell RNA-seq data.
Briefings Bioinform.
Jiaxing Chen, Chinwang Cheong, Liang Lan, Xin Zhou, Jiming Liu, Aiping Lyu, William K. Cheung, Lu Zhang
2021 J jnl
METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs.
BMC Bioinform.
Zhenmiao Zhang, Lu Zhang
2016 — conf
More accurate models for detecting gene-gene interactions from public expression compendia.
BIBM
Lu Zhang, Jiaxing Chen, Shuai Cheng Li
2015 — conf
Reconstructing directed gene regulatory network by only gene expression data.
BIBM
Lu Zhang, Yen Kaow Ng, Shuaicheng Li
2013 J jnl
PriVar: a toolkit for prioritizing SNVs and indels from next-generation sequencing data.
Bioinform.
Lu Zhang, Jing Zhang, Jing Yang, Dingge Ying, Yu-Lung Lau, Wanling Yang