Lorena A. Barba

65 papers A 1Journal 60Unranked 4

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	The Conversational Exam: A Scalable Assessment Design for the AI Era. CoRR Lorena A. Barba, Laura Stegner
2025	J	`jnl`	Experience Embracing GenAI in an Engineering Computations Course: What Went Wrong and What's Next. Computer Lorena A. Barba
2025	J	`jnl`	Verification and Validation for Trustworthy Scientific Machine Learning. CoRR John D. Jakeman, Lorena A. Barba, Joaquim R. R. A. Martins, Thomas O'Leary-Roseberry
2023	J	`jnl`	Predictive Limitations of Physics-Informed Neural Networks in Vortex Shedding. CoRR Pi-Yueh Chuang, Lorena A. Barba
2023	J	`jnl`	PyExaFMM: an exercise in designing high-performance software with Python and Numba. CoRR Srinath Kailasa, Tingyu Wang, Lorena A. Barba, Timo Betcke
2022	J	`jnl`	Defining the Role of Open Source Software in Research Reproducibility. Computer Lorena A. Barba
2022	J	`jnl`	Defining the role of open source software in research reproducibility. CoRR Lorena A. Barba
2022	—	`conf`	Experience report of physics-informed neural networks in fluid simulations: pitfalls and frustration. SciPy Pi-Yueh Chuang, Lorena A. Barba
2022	J	`jnl`	Experience report of physics-informed neural networks in fluid simulations: pitfalls and frustration. CoRR Pi-Yueh Chuang, Lorena A. Barba
2022	J	`jnl`	Inexact GMRES iterations and relaxation strategies with fast-multipole boundary element method. Adv. Comput. Math. Tingyu Wang, Simon K. Layton, Lorena A. Barba
2022	J	`jnl`	PyExaFMM: An Exercise in Designing High-Performance Software With Python and Numba. Comput. Sci. Eng. Srinath Kailasa, Tingyu Wang, Lorena A. Barba, Timo Betcke
2021	A	`conf`	12 Ways to Fool the Masses with Irreproducible Results. IPDPS Lorena A. Barba
2021	J	`jnl`	ExaFMM: a high-performance fast multipole method library with C++ and Python interfaces. J. Open Source Softw. Tingyu Wang, Rio Yokota, Lorena A. Barba
2021	J	`jnl`	High-productivity, high-performance workflow for virus-scale electrostatic simulations with Bempp-Exafmm. CoRR Tingyu Wang, Christopher D. Cooper, Timo Betcke, Lorena A. Barba
2021	J	`jnl`	Reproducibility Practice in High-Performance Computing: Community Survey Results. Comput. Sci. Eng. Beth A. Plale, Tanu Malik, Line C. Pouchard, Lorena A. Barba, Sandra Gesing
2021	J	`jnl`	Reproducing GW150914: The First Observation of Gravitational Waves From a Binary Black Hole Merger. Comput. Sci. Eng. Duncan A. Brown, Karan Vahi, Michela Taufer, Von Welch, Ewa Deelman, Lorena A. Barba, George K. Thiruvathukal
2021	J	`jnl`	Scientific Computing With Python on High-Performance Heterogeneous Systems. Comput. Sci. Eng. Lorena A. Barba, Andreas Klöckner, Prabhu Ramachandran, Rollin C. Thomas
2021	J	`jnl`	The Python/Jupyter Ecosystem: Today's Problem-Solving Environment for Computational Science. Comput. Sci. Eng. Lorena A. Barba
2021	J	`jnl`	Toward Long-Term and Archivable Reproducibility. Comput. Sci. Eng. Mohammad Akhlaghi, Raúl Infante-Sainz, Boudewijn F. Roukema, Mohammadreza Khellat, David Valls-Gabaud, Roberto Baena Gallé, Lorena A. Barba, Sandra Gesing
2021	J	`jnl`	Trustworthy Computational Evidence Through Transparency and Reproducibility. Comput. Sci. Eng. Lorena A. Barba, George K. Thiruvathukal
2021	J	`jnl`	[Re] Three-dimensional wake topology and propulsive performance of low-aspect-ratio pitching-rolling plates. CoRR Olivier Mesnard, Lorena A. Barba
2021	J	`jnl`	geoclaw-landspill: an oil land-spill and overland flow simulator for pipeline rupture events. J. Open Source Softw. Pi-Yueh Chuang, Tracy Thorleifson, Lorena A. Barba
2020	J	`jnl`	Computational Science and Engineering in 2020. Comput. Sci. Eng. Lorena A. Barba
2020	J	`jnl`	Engineers Code: Reusable Open Learning Modules for Engineering Computations. Comput. Sci. Eng. Lorena A. Barba
2020	J	`jnl`	Engineers Code: reusable open learning modules for engineering computations. CoRR Lorena A. Barba
2020	J	`jnl`	Provenance Tracking in the LHCb Software. Comput. Sci. Eng. Ana Trisovic, Chris R. Jones, Ben Couturier, Marco Clemencic, Lorena A. Barba, George K. Thiruvathukal
2020	J	`jnl`	Reproducible Workflow on a Public Cloud for Computational Fluid Dynamics. Comput. Sci. Eng. Olivier Mesnard, Lorena A. Barba, George K. Thiruvathukal
2019	J	`jnl`	Praxis of Reproducible Computational Science. Comput. Sci. Eng. Lorena A. Barba
2019	J	`jnl`	Reproducible Workflow on a Public Cloud for Computational Fluid Dynamics. CoRR Olivier Mesnard, Lorena A. Barba
2018	J	`jnl`	Journal of Open Source Software (JOSS): design and first-year review. PeerJ Comput. Sci. Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin M. Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob VanderPlas
2018	J	`jnl`	PetIBM: toolbox and applications of the immersed-boundary method on distributed-memory architectures. J. Open Source Softw. Pi-Yueh Chuang, Olivier Mesnard, Anush Krishnan, Lorena A. Barba
2018	J	`jnl`	Terminologies for Reproducible Research. CoRR Lorena A. Barba
2018	J	`jnl`	The principles of tomorrow's university. F1000Research Daniel S. Katz, Gabrielle Allen, Lorena A. Barba, Devin R. Berg, Holly Bik, Carl Boettiger, Christine L. Borgman, C. Titus Brown, Stuart Buck, Randy Burd, Anita de Waard, Martin Paul Eve, Brian E. Granger, Josh Greenberg, Adina Howe, Bill Howe, May Khanna, Timothy L. Killeen, Matthew S. Mayernik, Erin C. McKiernan, Chris Mentzel, Nirav C. Merchant, Kyle E. Niemeyer, Laura Norén, Sarah M. Nusser, Daniel A. Reed, Edward Seidel, MacKenzie Smith, Jeffrey R. Spies, Matthew J. Turk, John D. Van Horn, Jay Walsh
2017	J	`jnl`	AmgXWrapper: An interface between PETSc and the NVIDIA AmgX library. J. Open Source Softw. Pi-Yueh Chuang, Lorena A. Barba
2017	J	`jnl`	Journal of Open Source Software (JOSS): design and first-year review. CoRR Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin Mattheus Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob VanderPlas
2017	J	`jnl`	PyGBe-LSPR: Python and GPU Boundary-integral solver for electrostatics. J. Open Source Softw. Natalia C. Clementi, Gilbert Forsyth, Christopher D. Cooper, Lorena A. Barba
2017	J	`jnl`	Reproducible Research for Computing in Science & Engineering. Comput. Sci. Eng. Lorena A. Barba, George K. Thiruvathukal
2017	J	`jnl`	Reproducible and Replicable Computational Fluid Dynamics: It's Harder Than You Think. Comput. Sci. Eng. Olivier Mesnard, Lorena A. Barba
2017	J	`jnl`	Sustainable computational science: the ReScience initiative. CoRR Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena A. Barba, Fabien C. Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc-André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael Neto Henriques, Xavier Hinaut, Kamil S. Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Dan McGlinn, Christoph Metzner, Owen L. Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne B. Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Jemma Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya E. Vostinar, Roman Yurchak, Tiziano Zito
2017	J	`jnl`	Sustainable computational science: the ReScience initiative. PeerJ Comput. Sci. Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena A. Barba, Fabien C. Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc-André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael Neto Henriques, Xavier Hinaut, Kamil S. Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Dan McGlinn, Christoph Metzner, Owen L. Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne B. Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Jemma Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya E. Vostinar, Roman Yurchak, Tiziano Zito
2017	J	`jnl`	cuIBM: a GPU-based immersed boundary method code. J. Open Source Softw. Anush Krishnan, Olivier Mesnard, Lorena A. Barba
2016	J	`jnl`	Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code. Comput. Phys. Commun. Christopher D. Cooper, Lorena A. Barba
2016	J	`jnl`	PyGBe: Python, GPUs and Boundary elements for biomolecular electrostatics. J. Open Source Softw. Christopher D. Cooper, Natalia C. Clementi, Gilbert Forsyth, Lorena A. Barba
2014	J	`jnl`	A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers. Comput. Phys. Commun. Christopher D. Cooper, Jaydeep P. Bardhan, Lorena A. Barba
2014	—	`conf`	Scalable Fast Multipole Accelerated Vortex Methods. IPDPS Workshops Qi Hu, Nail A. Gumerov, Rio Yokota, Lorena A. Barba, Ramani Duraiswami
2014	J	`jnl`	Standing Together for Reproducibility in Large-Scale Computing: Report on reproducibility@XSEDE. CoRR Doug James, Nancy Wilkins-Diehr, Victoria Stodden, Dirk Colbry, Carlos Rosales, Mark R. Fahey, Justin Shi, Rafael Ferreira da Silva, Kyo Lee, Ralph Roskies, Laurence Loewe, Susan Lindsey, Rob Kooper, Lorena A. Barba, David H. Bailey, Jonathan M. Borwein, Óscar Corcho, Ewa Deelman, Michael C. Dietze, Benjamin Gilbert, Jan Harkes, Seth Keele, Praveen Kumar, Jong Lee, Erika Linke, Richard Marciano, Luigi Marini, Chris Mattmann, Dave Mattson, Kenton McHenry, Robert T. McLay, Sheila Miguez, Barbara S. Minsker, María S. Pérez-Hernández, Dan Ryan, Mats Rynge, Idafen Santana-Pérez, Mahadev Satyanarayanan, Gloriana St. Clair, Keith Webster, Eivind Hovig, Daniel S. Katz, Sophie Kay, Geir Kjetil Sandve, David Skinner, Gabrielle Allen, John Cazes, Kym Won Cho, Jim Fonseca, Lorraine J. Hwang, Lars Koesterke, Pragnesh Patel, Line Pouchard, Edward Seidel, Isuru Suriarachchi
2013	J	`jnl`	Petascale turbulence simulation using a highly parallel fast multipole method on GPUs. Comput. Phys. Commun. Rio Yokota, Lorena A. Barba, Tetsu Narumi, Kenji Yasuoka
2012	J	`jnl`	A tuned and scalable fast multipole method as a preeminent algorithm for exascale systems. Int. J. High Perform. Comput. Appl. Rio Yokota, Lorena A. Barba
2012	—	`conf`	Abstract: Scalable Fast Multipole Methods for Vortex Element Methods. SC Companion Qi Hu, Nail A. Gumerov, Rio Yokota, Lorena A. Barba, Ramani Duraiswami
2012	J	`jnl`	Hierarchical N-body Simulations with Autotuning for Heterogeneous Systems. Comput. Sci. Eng. Rio Yokota, Lorena A. Barba
2012	—	`conf`	Poster: Scalable Fast Multipole Methods for Vortex Element Methods. SC Companion Qi Hu, Nail A. Gumerov, Rio Yokota, Lorena A. Barba, Ramani Duraiswami
2011	J	`jnl`	A Tuned and Scalable Fast Multipole Method as a Preeminent Algorithm for Exascale Systems CoRR Rio Yokota, Lorena A. Barba
2011	J	`jnl`	Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknowns. Comput. Phys. Commun. Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba, Tsuyoshi Hamada
2011	J	`jnl`	Fast Multipole Method vs. Spectral Method for the Simulation of Isotropic Turbulence on GPUs CoRR Rio Yokota, Lorena A. Barba
2011	J	`jnl`	Fast N-body Simulations on GPUs CoRR Rio Yokota, Lorena A. Barba
2011	J	`jnl`	How to obtain efficient GPU kernels: An illustration using FMM & FGT algorithms. Comput. Phys. Commun. Felipe A. Cruz, Simon K. Layton, Lorena A. Barba
2011	J	`jnl`	Petascale turbulence simulation using a highly parallel fast multipole method CoRR Rio Yokota, Tetsu Narumi, Lorena A. Barba, Kenji Yasuoka
2011	J	`jnl`	cuIBM -- A GPU-accelerated Immersed Boundary Method CoRR Simon K. Layton, Anush Krishnan, Lorena A. Barba
2010	J	`jnl`	Biomolecular Electrostatics Simulation by an FMM-based BEM on 512 GPUs CoRR Rio Yokota, Tsuyoshi Hamada, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba
2010	J	`jnl`	Global field interpolation for particle methods. J. Comput. Phys. Lorena A. Barba, Louis F. Rossi
2010	J	`jnl`	How to obtain efficient GPU kernels: an illustration using FMM & FGT algorithms CoRR Felipe A. Cruz, Simon K. Layton, Lorena A. Barba
2009	J	`jnl`	Fast radial basis function interpolation with Gaussians by localization and iteration. J. Comput. Phys. Claudio E. Torres, Lorena A. Barba
2009	J	`jnl`	PetFMM--A dynamically load-balancing parallel fast multipole library CoRR Felipe A. Cruz, Matthew G. Knepley, Lorena A. Barba
2009	J	`jnl`	PetRBF--A parallel O(N) algorithm for radial basis function interpolation CoRR Rio Yokota, Lorena A. Barba, Matthew G. Knepley
2008	J	`jnl`	Characterization of the errors of the FMM in particle simulations CoRR Felipe A. Cruz, Lorena A. Barba