Lisa Tucker-Kellogg

25 papers C 1Misc 2Journal 12Unranked 9
YearRankTypeTitle / Venue / Authors
2024 J jnl
Quantification of muscle fiber malformations using edge detection to investigate chronic muscle pressure ulcers.
Frontiers Bioinform.
Charlene Zhi Lin Ong, N. Jannah M. Nasir, Roy E. Welsch, Lisa Tucker-Kellogg, Jagath C. Rajapakse
2022 — conf
ArcheGEO: towards improving relevance of gene expression omnibus search results.
BCB
Huey-Eng Chua, Lisa Tucker-Kellogg, Sourav S. Bhowmick
2021 J jnl
Computational modeling suggests binding-induced expansion of Epsin disordered regions upon association with AP2.
PLoS Comput. Biol.
N. Suhas Jagannathan, Christopher W. V. Hogue, Lisa Tucker-Kellogg
2020 Misc conf
De novo Ensemble Modeling Suggests that AP2-Binding to Disordered Regions Can Increase StericVolume of Epsin but Not Eps15.
PSB
N. Suhas Jagannathan, Christopher W. V. Hogue, Lisa Tucker-Kellogg
2020 J jnl
Transcompp: understanding phenotypic plasticity by estimating Markov transition rates for cell state transitions.
Bioinform.
N. Suhas Jagannathan, Mario O. Ihsan, Xiao Xuan Kin, Roy E. Welsch, Marie-Véronique Clément, Lisa Tucker-Kellogg
2017 J jnl
Computational analysis reveals the coupling between bistability and the sign of a feedback loop in a TGF-β1 activation model.
BMC Syst. Biol.
Huipeng Li, Lakshmi Venkatraman, Balakrishnan Chakrapani Narmada, Jacob K. White, Hanry Yu, Lisa Tucker-Kellogg
2017 — conf
TINTIN: Exploiting Target Features for Signaling Network Similarity Computation and Ranking.
BCB
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg
2016 J jnl
Superpixel-based segmentation of muscle fibers in multi-channel microscopy.
BMC Syst. Biol.
Binh P. Nguyen, Hans Heemskerk, Peter T. C. So, Lisa Tucker-Kellogg
2016 — conf
TAPESTRY: Network-centric Target Prioritization in Disease-related Signaling Networks.
BCB
Huey-Eng Chua, Sourav S. Bhowmick, Jie Zheng, Lisa Tucker-Kellogg
2016 — conf
TENET: A Machine Learning-Based System for Target Characterization in Signaling Networks.
ICDM Workshops
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, C. Forbes Dewey Jr.
2015 J jnl
Non-canonical Activation of Akt in Serum-Stimulated Fibroblasts, Revealed by Comparative Modeling of Pathway Dynamics.
PLoS Comput. Biol.
Tri Hieu Nim, Le Luo, Jacob K. White, Marie-Véronique Clément, Lisa Tucker-Kellogg
2015 J jnl
TENET: topological feature-based target characterization in signalling networks.
Bioinform.
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, C. Forbes Dewey Jr.
2014 — conf
One feature doesn't fit all: characterizing topological features of targets in signaling networks.
BCB
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg
2014 J jnl
The Self-Limiting Dynamics of TGF-β Signaling
PLoS Comput. Biol.
Junjie Wang, Lisa Tucker-Kellogg, Inn Chuan Ng, Ruirui Jia, P. S. Thiagarajan, Jacob K. White, Hanry Yu
2013 J jnl
Computational modelling of LY303511 and TRAIL-induced apoptosis suggests dynamic regulation of cFLIP.
Bioinform.
Yuan Shi, Gregory Mellier, Sinong Huang, Jacob K. White, Shazib Pervaiz, Lisa Tucker-Kellogg
2013 J jnl
SPEDRE: a web server for estimating rate parameters for cell signaling dynamics in data-rich environments.
Nucleic Acids Res.
Tri Hieu Nim, Jacob K. White, Lisa Tucker-Kellogg
2013 J jnl
Systematic parameter estimation in data-rich environments for cell signalling dynamics.
Bioinform.
Tri Hieu Nim, Le Luo, Marie-Véronique Clément, Jacob K. White, Lisa Tucker-Kellogg
2012 — conf
In silico identification of endo16 regulators in the sea urchin endomesoderm gene regulatory network.
IHI
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, Qing Zhao, C. Forbes Dewey Jr., Hanry Yu
2012 — conf
PANI: an interactive data-driven tool for target prioritization in signaling networks.
IHI
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, Yingqi Wang, C. Forbes Dewey Jr., Hanry Yu
2012 — conf
STEROID: in silico heuristic target combination identification for disease-related signaling networks.
BCB
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, C. Forbes Dewey Jr.
2011 — conf
Pani: a novel algorithm for fast discovery of putative target nodes in signaling networks.
BCB
Huey-Eng Chua, Qing Zhao, Sourav S. Bhowmick, C. Forbes Dewey Jr., Lisa Tucker-Kellogg, Hanry Yu
2010 Misc conf
The Steady States and Dynamics of Urokinase-mediated Plasmin Activation.
Pacific Symposium on Biocomputing
Lakshmi Venkatraman, Hanry Yu, Sourav S. Bhowmick, C. Forbes Dewey Jr., Lisa Tucker-Kellogg
2008 J jnl
pFlexAna: detecting conformational changes in remotely related proteins.
Nucleic Acids Res.
Anshul Nigham, Lisa Tucker-Kellogg, Ivana Mihalek, Chandra Verma, David Hsu
2007 C conf
Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation.
WABI
Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S. Thiagarajan
2002 — —
Systematic conformational search with constraint satisfaction.
Lisa Tucker-Kellogg