Liqing Zhang

41 papers A* 1Journal 18Unranked 21
YearRankTypeTitle / Venue / Authors
2026 J jnl
ARGfore: A Multivariate Framework for Forecasting Antibiotic Resistance Gene Abundances Using Time-Series Metagenomic Datasets.
IEEE Access
Joung Min Choi, Monjura Afrin Rumi, Connor L. Brown, Peter J. Vikesland, Amy Pruden, Liqing Zhang
2025 J jnl
BCtypeFinder: A Semi-Supervised Model with Domain Adaptation for Breast Cancer Subtyping Using DNA Methylation Profiles.
J. Comput. Biol.
Joung Min Choi, Liqing Zhang
2025 — conf
Resistance Genes are Distinct in Protein-Protein Interaction Networks According to Drug Class and Gene Mobility.
ICCABS
Nazifa Ahmed Moumi, Connor L. Brown, Shafayat Ahmed, Peter J. Vikesland, Amy Pruden, Liqing Zhang
2024 — conf
Breast Cancer Subtype Prediction Model Integrating Domain Adaptation with Semi-supervised Learning on DNA Methylation Profiles.
AIME (1)
Joung Min Choi, Liqing Zhang
2024 — conf
DeePSP-GIN: identification and classification of phage structural proteins using predicted protein structure, pretrained protein language model, and graph isomorphism network.
BCB
Muhit Islam Emon, Badhan Das, Ashrith Reddy Thukkaraju, Liqing Zhang
2024 A* conf
Mastering Long-Tail Complexity on Graphs: Characterization, Learning, and Generalization.
KDD
Haohui Wang, Baoyu Jing, Kaize Ding, Yada Zhu, Wei Cheng, Si Zhang, Yonghui Fan, Liqing Zhang, Dawei Zhou
2023 J jnl
DeepMicroGen: a generative adversarial network-based method for longitudinal microbiome data imputation.
Bioinform.
Joung Min Choi, Ming Ji, Layne T. Watson, Liqing Zhang
2023 J jnl
FastViromeExplorer-Novel: Recovering Draft Genomes of Novel Viruses and Phages in Metagenomic Data.
J. Comput. Biol.
Saima Sultana Tithi, Frank O. Aylward, Roderick V. Jensen, Liqing Zhang
2022 — conf
LM-ARG: Identification & classification of antibiotic resistance genes leveraging pre-trained protein language models.
BIBM
Shafayat Ahmed, Muhit Islam Emon, Nazifa Ahmed Moumi, Liqing Zhang
2022 — conf
Protein-Protein Interaction Network Analysis Reveals Distinct Patterns of Antibiotic Resistance Genes.
BIBM
Nazifa Ahmed Moumi, Connor L. Brown, Peter J. Vikesland, Amy Pruden, Liqing Zhang
2022 — conf
Towards Automatic Curation of Antibiotic Resistance Genes via Statement Extraction from Scientific Papers: A Benchmark Dataset and Models.
BioNLP@ACL
Sidhant Chandak, Liqing Zhang, Connor L. Brown, Lifu Huang
2021 J jnl
AgroSeek: a system for computational analysis of environmental metagenomic data and associated metadata.
BMC Bioinform.
Xiao Liang, Kyle Akers, Ishi Keenum, Lauren Wind, Suraj Gupta, Chaoqi Chen, Reem Aldaihani, Amy Pruden, Liqing Zhang, Katharine F. Knowlton, Kang Xia, Lenwood S. Heath
2021 J jnl
MetaMLP: A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples.
J. Comput. Biol.
Gustavo A. Arango-Argoty, Lenwood S. Heath, Amy Pruden, Peter J. Vikesland, Liqing Zhang
2021 — conf
Towards a Serverless Bioinformatics Cyberinfrastructure Pipeline.
HiPS@HPDC
Shunyu David Yao, Muhammad Ali Gulzar, Liqing Zhang, Ali Raza Butt
2020 — conf
A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples.
ICCABS
Gustavo A. Arango-Argoty, Lenwood S. Heath, Amy Pruden, Peter J. Vikesland, Liqing Zhang
2020 J jnl
ARGminer: a web platform for the crowdsourcing-based curation of antibiotic resistance genes.
Bioinform.
Gustavo A. Arango-Argoty, G. K. P. Guron, Emily Garner, M. V. Riquelme, Lenwood S. Heath, Amy Pruden, Peter J. Vikesland, Liqing Zhang
2018 J jnl
Combining weighted adaptive CS-LBP and local linear discriminant projection for gait recognition.
Multim. Tools Appl.
Shanwen Zhang, Liqing Zhang
2017 — conf
Analysis of whole genome sequence and genome-wide SNPs in highly inbred pigs.
ICCABS
Jinlong Huo, Wenmin Chen, Xiaowei Wu, Kuan Yang, Weirong Pan, Liqing Zhang, Yangzhi Zeng
2017 — conf
InfoTrim: A DNA read quality trimmer using entropy.
ICCABS
Jacob Porter, Liqing Zhang
2017 J jnl
Leaf image based cucumber disease recognition using sparse representation classification.
Comput. Electron. Agric.
Shanwen Zhang, Xiaowei Wu, Zhuhong You, Liqing Zhang
2016 — conf
Poster: Diagnosing and treating code-duplication problems in bioinformatics libraries.
ICCABS
Mohammad Shabbir Hasan, Saima Sultana Tithi, Eli Tilevich, Liqing Zhang
2016 — conf
UPS-indel: A better approach for finding indel redundancy.
ICCABS
Mohammad Shabbir Hasan, Xiaowei Wu, Layne T. Watson, Zhiyi Li, Liqing Zhang
2015 J jnl
HMMvar-func: a new method for predicting the functional outcome of genetic variants.
BMC Bioinform.
Mingming Liu, Layne T. Watson, Liqing Zhang
2015 J jnl
PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions.
Bioinform.
Wei Chen, Xitong Zhang, Jordan Brooker, Hao Lin, Liqing Zhang, Kuo-Chen Chou
2014 — conf
Classification of Mutations by Functional Impact Type: Gain of Function, Loss of Function, and Switch of Function.
ISBRA
Mingming Liu, Layne T. Watson, Liqing Zhang
2014 — conf
Improving bisulfite short-read mapping efficiency with hairpin-bisulfite data.
ICCABS
Jacob Porter, Ming-an Sun, Hehuang Xie, Liqing Zhang
2014 J jnl
Objective and Comprehensive Evaluation of Bisulfite Short Read Mapping Tools.
Adv. Bioinformatics
Hong Tran, Jacob Porter, Ming-an Sun, Hehuang Xie, Liqing Zhang
2014 J jnl
Quantitative prediction of the effect of genetic variation using hidden Markov models.
BMC Bioinform.
Mingming Liu, Layne T. Watson, Liqing Zhang
2014 J jnl
Vindel: a simple pipeline for checking indel redundancy.
BMC Bioinform.
Zhiyi Li, Xiaowei Wu, Bin He, Liqing Zhang
2013 — ch.
Status of Research on Insertion and Deletion Variations in the Human Population.
Models and Algorithms for Genome Evolution
Liqing Zhang, Mingming Liu, Layne T. Watson
2011 J jnl
A Network of SCOP Hidden Markov Models and Its Analysis.
BMC Bioinform.
Liqing Zhang, Layne T. Watson, Lenwood S. Heath
2011 — conf
A new functional association-based protein complex prediction.
BIBM Workshops
Mingming Liu, Yanwei Huang, Liqing Zhang, David R. Bevan
2010 — conf
GPU-RMAP: Accelerating Short-Read Mapping on Graphics Processors.
CSE
Ashwin M. Aji, Liqing Zhang, Wu-chun Feng
2010 J jnl
MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement.
BMC Bioinform.
Guanqun Shi, Liqing Zhang, Tao Jiang
2010 — conf
The Expected Fitness Cost of a Mutation Fixation under the One-Dimensional Fisher Model.
ISBRA
Liqing Zhang, Layne T. Watson
2009 J jnl
Identifying disease associations via genome-wide association studies.
BMC Bioinform.
Wenhui Huang, Pengyuan Wang, Zhen Liu, Liqing Zhang
2008 — conf
A Framework to Understand the Mechanism of Toxicity.
ICIC (2)
Wenhui Huang, Liqing Zhang
2008 — conf
A Holistic View of Evolutionary Rates in Paralogous and Orthologous Genes.
ICIC (2)
Deng Pan, Liqing Zhang
2008 — conf
Using Cost-Sensitive Learning to Determine Gene Conversions.
ICIC (2)
Mark J. Lawson, Lenwood S. Heath, Naren Ramakrishnan, Liqing Zhang
2007 J jnl
Note on the Computation of Critical Effective Population Sizes.
J. Comput. Biol.
Liqing Zhang, Layne T. Watson
2007 — conf
The Identification of Antisense Gene Pairs Through Available Software.
ISBRA
Mark J. Lawson, Liqing Zhang