Ling Luo - RankMe

72 papers A* 1Misc 2Journal 47Unranked 22

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	CNER-Omni: A unified dynamic modality learning framework for Chinese named entity recognition across text and speech. Neural Networks Jinzhong Ning, Wenxuan Mu, Songtao Li, Yi-Jia Zhang, Ling Luo, Yuanyuan Sun, Mingyu Lu, Hongfei Lin
2026	J	`jnl`	Reader comes first: A demand-oriented readability controllable summarization. Expert Syst. Appl. Qinyu Han, Yuanyuan Sun, Zhihao Yang, Wenfei Liu, Ling Luo, Hongfei Lin
2026	J	`jnl`	RexDrug: Reliable Multi-Drug Combination Extraction through Reasoning-Enhanced LLMs. CoRR Zhijun Wang, Ling Luo, Dinghao Pan, Huan Zhuang, Lejing Yu, Yuanyuan Sun, Hongfei Lin
2025	—	`conf`	A Unified Biomedical Named Entity Recognition Framework With Large Language Models. BIBM Tengxiao Lv, Ling Luo, Juntao Li, Yanhua Wang, Yuchen Pan, Chao Liu, Yanan Wang, Yan Jiang, Huiyi Lv, Yuanyuan Sun, Jian Wang, Hongfei Lin
2025	J	`jnl`	A Unified Biomedical Named Entity Recognition Framework with Large Language Models. CoRR Tengxiao Lv, Ling Luo, Juntao Li, Yanhua Wang, Yuchen Pan, Chao Liu, Yanan Wang, Yan Jiang, Huiyi Lv, Yuanyuan Sun, Jian Wang, Hongfei Lin
2025	J	`jnl`	ADENER: A syntax-augmented grid-tagging model for Adverse Drug Event extraction in social media. J. Biomed. Informatics Weiru Fu, Hao Li, Ling Luo, Hongfei Lin
2025	J	`jnl`	Automatic genetic phenotype normalization from dysmorphology physical examinations: an overview of the BioCreative VIII - Task 3 competition. Database J. Biol. Databases Curation Davy Weissenbacher, Xinwei Zhao, Jessica R. C. Priestley, Katherine M. Szigety, Sarah F. Schmidt, Karen O'Connor, Ekin Soysal, Kirk Roberts, Jiewei Qi, Ling Luo, Zhihao Yang, Hongfei Lin, Hajung Kim, Chanhwi Kim, Jiwoong Sohn, Tim Beck, Marek Rei, Sunkyu Kim, T. Ian Simpson, Joram M. Posma, Antoine Lain, Mujeen Sung, Jaewoo Kang, Areej Alhassan, Viktor Schlegel, Monira Aloud, Riza Batista-Navarro, Goran Nenadic, Ying-Jia Lin, Zhi-Quan Feng, Hung-Yu Kao, Ian M. Campbell, Graciela Gonzalez-Hernandez
2025	—	`conf`	CAKADE: Improving ADE Detection on Social Media with LLMs via Counterfactual Augmentation and Knowledge-Enhanced Instruction Tuning. BIBM Weiru Fu, Yunzhi Qiu, Ling Luo, Jian Wang, Hongfei Lin
2025	J	`jnl`	CDrugRed: A Chinese Drug Recommendation Dataset for Discharge Medications in Metabolic Diseases. CoRR Juntao Li, Haobin Yuan, Ling Luo, Yan Jiang, Fan Wang, Ping Zhang, Huiyi Lv, Jian Wang, Yuanyuan Sun, Hongfei Lin
2025	—	`conf`	Can Herpes Zoster Vaccine Reduce Alzheimer's Disease Risk? A KG and LLMS Synergistic Integration Approach. BIBM Yunzhi Qiu, Weiru Fu, Yumeng Yang, Ling Luo, Hongfei Lin
2025	—	`conf`	DALE: Semantically Disentangled LoRA Expert Mixture for Depression Detection in Psychiatric Dialogue. BIBM Jian Ding, Dailin Li, Qinyu Han, Tengxiao Lv, Jian Wang, Hongfei Lin, Ling Luo, Yuanyuan Sun
2025	J	`jnl`	FocusMed: A Large Language Model-based Framework for Enhancing Medical Question Summarization with Focus Identification. CoRR Chao Liu, Ling Luo, Tengxiao Lv, Huan Zhuang, Lejing Yu, Jian Wang, Hongfei Lin
2025	J	`jnl`	LCDL: Classification of ICD codes based on disease label co-occurrence dependency and LongFormer with medical knowledge. Artif. Intell. Medicine Yumeng Yang, Hongfei Lin, Zhihao Yang, Yijia Zhang, Di Zhao, Ling Luo
2025	J	`jnl`	MedTrust-RAG: Evidence Verification and Trust Alignment for Biomedical Question Answering. CoRR Yingpeng Ning, Yuanyuan Sun, Ling Luo, Yanhua Wang, Yuchen Pan, Hongfei Lin
2025	J	`jnl`	Overview of CHIP 2025 Shared Task 2: Discharge Medication Recommendation for Metabolic Diseases Based on Chinese Electronic Health Records. CoRR Juntao Li, Haobin Yuan, Ling Luo, Tengxiao Lv, Yan Jiang, Fan Wang, Ping Zhang, Huiyi Lv, Jian Wang, Yuanyuan Sun, Hongfei Lin
2025	—	`conf`	Prototype Tuning: A Meta-Learning Approach for Few-Shot Document-Level Relation Extraction with Large Language Models. NAACL (Findings) Dinghao Pan, Yuanyuan Sun, Bo Xu, Jiru Li, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang
2025	J	`jnl`	Span-based syntactic feature fusion for aspect sentiment triplet extraction. Inf. Fusion Guangtao Xu, Zhihao Yang, Bo Xu, Ling Luo, Hongfei Lin
2024	—	`conf`	An Improved Method for Phenotype Concept Recognition Using Rich HPO Information. BIBM Jiewei Qi, Ling Luo, Zhihao Yang, Jian Wang, Huiwei Zhou, Hongfei Lin
2024	—	`conf`	Biomedical Document-level Relation Extraction with Coreference and Anaphor Graphs. BIBM Jiru Li, Yuanyuan Sun, Zhihao Yang, Ling Luo, Lei Wang, Wei Liu, Yin Zhang, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Hongfei Lin
2024	—	`conf`	Biomedical Event Extraction as Semantic Segmentation. BIBM Liangyu Gao, Zhihao Yang, Jinzhong Ning, Kai Ma, Lei Wang, Wei Liu, Yin Zhang, Ling Luo, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Yuanyuan Sun, Hongfei Lin
2024	—	`conf`	Breaking the Boundaries: A Unified Framework for Chinese Named Entity Recognition Across Text and Speech. EMNLP (Findings) Jinzhong Ning, Yuanyuan Sun, Bo Xu, Zhihao Yang, Ling Luo, Hongfei Lin
2024	—	`conf`	Document Embeddings Enhance Biomedical Retrieval-Augmented Generation. BIBM Yongle Kong, Zhihao Yang, Ling Luo, Zeyuan Ding, Lei Wang, Wei Liu, Yin Zhang, Bo Xu, Jian Wang, Yuanyuan Sun, Zhehuan Zhao, Hongfei Lin
2024	—	`conf`	Document-level Biomedical Relation Extraction Based on Relation-guided Entity-level Graphs. BIBM Liangyu Gao, Zhihao Yang, Haixin Tan, Lei Wang, Wei Liu, Yin Zhang, Ling Luo, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Yuanyuan Sun, Hongfei Lin
2024	—	`conf`	EDNER: Edge Detection for Named Entity Recognition. NLPCC (2) Liangyu Gao, Zhihao Yang, Ling Luo, Wenfei Liu, Hongfei Lin, Jian Wang
2024	—	`conf`	Efficient Knowledge Graph Embedding Framework to Alleviate Data Sparsity for Polypharmacy Side Effects Prediction. BIBM Senbo Tu, Zhihao Yang, Lei Wang, Wei Liu, Yin Zhang, Ling Luo, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Hongfei Lin
2024	J	`jnl`	EnzChemRED, a rich enzyme chemistry relation extraction dataset. CoRR Po-Ting Lai, Elisabeth Coudert, Lucila Aimo, Kristian B. Axelsen, Lionel Breuza, Edouard De Castro, Marc Feuermann, Anne Morgat, Lucille Pourcel, Ivo Pedruzzi, Sylvain Poux, Nicole Redaschi, Catherine Rivoire, Anastasia Sveshnikova, Chih-Hsuan Wei, Robert Leaman, Ling Luo, Zhiyong Lu, Alan J. Bridge
2024	A*	`conf`	From Retrieval to Generation: A Simple and Unified Generative Model for End-to-End Task-Oriented Dialogue. AAAI Zeyuan Ding, Zhihao Yang, Ling Luo, Yuanyuan Sun, Hongfei Lin
2024	J	`jnl`	Learning to explain is a good biomedical few-shot learner. Bioinform. Peng Chen, Jian Wang, Ling Luo, Hongfei Lin, Zhihao Yang
2024	J	`jnl`	PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge. CoRR Chih-Hsuan Wei, Alexis Allot, Po-Ting Lai, Robert Leaman, Shubo Tian, Ling Luo, Qiao Jin, Zhizheng Wang, Qingyu Chen, Zhiyong Lu
2024	J	`jnl`	Taiyi: a bilingual fine-tuned large language model for diverse biomedical tasks. J. Am. Medical Informatics Assoc. Ling Luo, Jinzhong Ning, Yingwen Zhao, Zhijun Wang, Zeyuan Ding, Peng Chen, Weiru Fu, Qinyu Han, Guangtao Xu, Yunzhi Qiu, Dinghao Pan, Jiru Li, Hao Li, Wenduo Feng, Senbo Tu, Yuqi Liu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Hongfei Lin
2024	J	`jnl`	The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop. Database J. Biol. Databases Curation Rezarta Islamaj, Chih-Hsuan Wei, Po-Ting Lai, Ling Luo, Cathleen Coss, Preeti Gokal Kochar, Nicholas Miliaras, Oleg Rodionov, Keiko Sekiya, Dorothy Trinh, Deborah Whitman, Zhiyong Lu
2024	J	`jnl`	The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII. Database J. Biol. Databases Curation Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Melo Almeida, Richard A. A. Jonker, Sofia I. R. Conceição, Diana F. Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M. Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee, Yi-Yu Hsu, Mingjie Li, Karin Verspoor, Zhiyong Lu
2023	J	`jnl`	AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning. Bioinform. Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu
2023	J	`jnl`	BioREx: Improving Biomedical Relation Extraction by Leveraging Heterogeneous Datasets. CoRR Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu
2023	J	`jnl`	BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets. J. Biomed. Informatics Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu
2023	J	`jnl`	GNorm2: an improved gene name recognition and normalization system. Bioinform. Chih-Hsuan Wei, Ling Luo, Rezarta Islamaj, Po-Ting Lai, Zhiyong Lu
2023	—	`conf`	Joint Biomedical Entity and Relation Extraction Based on Triple Region Vertices. BIBM Yuqi Liu, Zhihao Yang, Jinzhong Ning, Zhijun Wang, Ling Luo, Lei Wang, Yin Zhang, Wei Liu, Hongfei Lin, Jian Wang
2023	—	`conf`	Joint Biomedical Entity and Relation Extraction with Unified Interaction Maps. BIBM Haixin Tan, Zhihao Yang, Zeyuan Ding, Zhijun Wang, Ling Luo, Lei Wang, Yin Zhang, Wei Liu, Hongfei Lin, Jian Wang
2023	J	`jnl`	Taiyi: A Bilingual Fine-Tuned Large Language Model for Diverse Biomedical Tasks. CoRR Ling Luo, Jinzhong Ning, Yingwen Zhao, Zhijun Wang, Zeyuan Ding, Peng Chen, Weiru Fu, Qinyu Han, Guangtao Xu, Yunzhi Qiu, Dinghao Pan, Jiru Li, Hao Li, Wenduo Feng, Senbo Tu, Yuqi Liu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Hongfei Lin
2023	J	`jnl`	Term-BLAST-like alignment tool for concept recognition in noisy clinical texts. Bioinform. Tudor Groza, Honghan Wu, Marcel E. Dinger, Daniel Danis, Coleman Hilton, Anita Bagley, Jon R. Davids, Ling Luo, Zhiyong Lu, Peter N. Robinson
2022	J	`jnl`	A sequence labeling framework for extracting drug-protein relations from biomedical literature. Database J. Biol. Databases Curation Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Zhiyong Lu
2022	J	`jnl`	AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning. CoRR Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu
2022	J	`jnl`	Assigning Species Information to Corresponding Genes by a Sequence Labeling Framework. CoRR Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj Dogan, Zhiyong Lu
2022	J	`jnl`	Assigning species information to corresponding genes by a sequence labeling framework. Database J. Biol. Databases Curation Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj, Zhiyong Lu
2022	Misc	`conf`	BioRED: A Comprehensive Biomedical Relation Extraction Dataset. AMIA Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
2022	J	`jnl`	BioRED: A Comprehensive Biomedical Relation Extraction Dataset. CoRR Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
2022	J	`jnl`	BioRED: a rich biomedical relation extraction dataset. Briefings Bioinform. Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
2022	Misc	`conf`	PhenoGene: Disease-gene prioritization using graph embedding on patient phenotypic profiles. AMIA Shankai Yan, Ling Luo, Li Fang, Daniel Veltri, Andrew J. Oler, Rajarshi Ghosh, Chih-Hsuan Wei, Morgan Similuk, Kai Wang, Zhiyong Lu
2022	J	`jnl`	PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. J. Biomed. Informatics Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
2021	J	`jnl`	LitSuggest: a web-based system for literature recommendation and curation using machine learning. Nucleic Acids Res. Alexis Allot, Kyubum Lee, Qingyu Chen, Ling Luo, Zhiyong Lu
2021	J	`jnl`	PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. Bioinform. Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
2020	J	`jnl`	A neural network-based joint learning approach for biomedical entity and relation extraction from biomedical literature. J. Biomed. Informatics Ling Luo, Zhihao Yang, Mingyu Cao, Lei Wang, Yin Zhang, Hongfei Lin
2020	J	`jnl`	Artificial Intelligence (AI) in Action: Addressing the COVID-19 Pandemic with Natural Language Processing (NLP). CoRR Qingyu Chen, Robert Leaman, Alexis Allot, Ling Luo, Chih-Hsuan Wei, Shankai Yan, Zhiyong Lu
2020	J	`jnl`	Exploiting adversarial transfer learning for adverse drug reaction detection from texts. J. Biomed. Informatics Zhiheng Li, Zhihao Yang, Ling Luo, Yang Xiang, Hongfei Lin
2020	J	`jnl`	Exploiting sequence labeling framework to extract document-level relations from biomedical texts. BMC Bioinform. Zhiheng Li, Zhihao Yang, Yang Xiang, Ling Luo, Yuanyuan Sun, Hongfei Lin
2020	J	`jnl`	KGHC: a knowledge graph for hepatocellular carcinoma. BMC Medical Informatics Decis. Mak. Nan Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2020	J	`jnl`	PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using Human Phenotype Ontology. CoRR Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
2019	J	`jnl`	A Deep Learning Approach With Deep Contextualized Word Representations for Chemical-Protein Interaction Extraction From Biomedical Literature. IEEE Access Cong Sun, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2019	—	`conf`	DUTIR at TREC 2019: Precision Medicine Track. TREC Jingkun Feng, Zhihao Yang, Zhiqiang Liu, Ling Luo, Hongfei Lin, Jian Wang
2019	J	`jnl`	KeSACNN: a protein-protein interaction article classification approach based on deep neural network. Int. J. Data Min. Bioinform. Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2019	J	`jnl`	Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. Database J. Biol. Databases Curation Rezarta Islamaj Dogan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C. Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C. Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altinel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang, Hong-Jie Dai, Tung Tran, Ramakanth Kavuluru, Ling Luo, Albert Steppi, Jinfeng Zhang, Jinchan Qu, Zhiyong Lu
2018	—	`conf`	A multi-task learning based approach to biomedical entity relation extraction. BIBM Qingqing Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
2018	J	`jnl`	A neural network approach to chemical and gene/protein entity recognition in patents. J. Cheminformatics Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Jian Wang, Hongfei Lin
2018	J	`jnl`	An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition. Bioinform. Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang
2018	—	`conf`	DUTIR at the CCKS-2018 Task1: A Neural Network Ensemble Approach for Chinese Clinical Named Entity Recognition. CCKS Tasks Ling Luo, Nan Li, Shuaichi Li, Zhihao Yang, Hongfei Lin
2018	J	`jnl`	Document triage for identifying protein-protein interactions affected by mutations: a neural network ensemble approach. Database J. Biol. Databases Curation Ling Luo, Zhihao Yang, Hongfei Lin, Jian Wang
2018	—	`conf`	HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms. BIBM Qingqing Li, Zhihao Yang, Zhehuan Zhao, Ling Luo, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Yijia Zhang
2018	—	`conf`	Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach. BIBM Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
2017	J	`jnl`	An attention-based effective neural model for drug-drug interactions extraction. BMC Bioinform. Wei Zheng, Hongfei Lin, Ling Luo, Zhehuan Zhao, Zhengguang Li, Yijia Zhang, Zhihao Yang, Jian Wang
2016	J	`jnl`	Drug drug interaction extraction from biomedical literature using syntax convolutional neural network. Bioinform. Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang
2016	—	`conf`	ML-CNN: A novel deep learning based disease named entity recognition architecture. BIBM Zhehuan Zhao, Zhihao Yang, Ling Luo, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang
2015	—	`conf`	Deep neural network based protein-protein interaction extraction from biomedical literature. BIBM Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang, Song Gao