Ling-Yun Wu

43 papers C 1Journal 40Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Adaptive segmentation and optimization for efficient centralizer selection and placement in oilfield drilling operations.
Expert Syst. Appl.
Tao Ren, Yong Wang, Xin Chen, Qing Liu, Ling-Yun Wu
2025 J jnl
Toward energy-efficient blockchain system: A game theoretic analysis.
Comput. Ind. Eng.
Xu Wang, Ling-Yun Wu
2024 J jnl
Incorporating network diffusion and peak location information for better single-cell ATAC-seq data analysis.
Briefings Bioinform.
Jiating Yu, Jiacheng Leng, Zhichao Hou, Duanchen Sun, Ling-Yun Wu
2024 J jnl
Reverse network diffusion to remove indirect noise for better inference of gene regulatory networks.
Bioinform.
Jiating Yu, Jiacheng Leng, Fan Yuan, Duanchen Sun, Ling-Yun Wu
2023 J jnl
Author Correction: Supervised learning of high-confidence phenotypic subpopulations from single-cell data.
Nat. Mac. Intell.
Tao Ren, Canping Chen, Alexey V. Danilov, Susan Liu, Xiangnan Guan, Shunyi Du, Xiwei Wu, Mara H. Sherman, Paul T. Spellman, Lisa M. Coussens, Andrew C. Adey, Gordon B. Mills, Ling-Yun Wu, Zheng Xia
2023 J jnl
PathExpSurv: pathway expansion for explainable survival analysis and disease gene discovery.
BMC Bioinform.
Zhichao Hou, Jiacheng Leng, Jiating Yu, Zheng Xia, Ling-Yun Wu
2023 J jnl
Supervised learning of high-confidence phenotypic subpopulations from single-cell data.
Nat. Mac. Intell.
Tao Ren, Canping Chen, Alexey V. Danilov, Susan Liu, Xiangnan Guan, Shunyi Du, Xiwei Wu, Mara H. Sherman, Paul T. Spellman, Lisa M. Coussens, Andrew C. Adey, Gordon B. Mills, Ling-Yun Wu, Zheng Xia
2022 J jnl
Importance-Penalized Joint Graphical Lasso (IPJGL): differential network inference via GGMs.
Bioinform.
Jiacheng Leng, Ling-Yun Wu
2022 J jnl
Interaction-based transcriptome analysis via differential network inference.
Briefings Bioinform.
Jiacheng Leng, Ling-Yun Wu
2022 J jnl
hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy.
Briefings Bioinform.
Yong Lu, Gang Xue, Ningbo Zheng, Kun Han, Wenzhong Yang, Rui-Sheng Wang, Ling-Yun Wu, Lance D. Miller, Timothy Pardee, Pierre L. Triozzi, Hui-Wen Lo, Kounosuke Watabe, Stephen T. C. Wong, Boris C. Pasche, Wei Zhang, Guangxu Jin
2021 — conf
An Optimization Method for Calibrating Wireline Conveyance Tension.
CSDM Asia / CSDM
Can Jin, Xin Peng, Qing Liu, Xinhan Ye, Lang Chen, Qiuyue Yuan, Xiang-Sun Zhang, Ling-Yun Wu, Yong Wang
2021 J jnl
Network Refinement: A unified framework for enhancing signal or removing noise of networks.
CoRR
Jiating Yu, Jiacheng Leng, Ling-Yun Wu
2021 J jnl
Understanding the network formation pattern for better link prediction.
CoRR
Jiating Yu, Ling-Yun Wu
2019 J jnl
Discovering cooperative biomarkers for heterogeneous complex disease diagnoses.
Briefings Bioinform.
Duanchen Sun, Xian-Wen Ren, Eszter Ari, Tamás Korcsmáros, Peter Csermely, Ling-Yun Wu
2017 J jnl
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis.
BMC Syst. Biol.
Duanchen Sun, Yinliang Liu, Xiang-Sun Zhang, Ling-Yun Wu
2017 J jnl
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces.
BMC Bioinform.
Zhi-Ping Liu, Shutang Liu, Ruitang Chen, Xiaopeng Huang, Ling-Yun Wu
2015 J jnl
Potts model based on a Markov process computation solves the community structure problem effectively.
CoRR
Hui-Jia Li, Yong Wang, Ling-Yun Wu, Junhua Zhang, Xiang-Sun Zhang
2014 J jnl
Discovery of co-occurring driver pathways in cancer.
BMC Bioinform.
Junhua Zhang, Ling-Yun Wu, Xiang-Sun Zhang, Shihua Zhang
2013 J jnl
Corbi: a new R package for biological network alignment and querying.
BMC Syst. Biol.
Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang
2013 J jnl
Structure and dynamics of core-periphery networks.
CoRR
Peter Csermely, András London, Ling-Yun Wu, Brian Uzzi
2013 J jnl
Structure and dynamics of core/periphery networks.
J. Complex Networks
Peter Csermely, András London, Ling-Yun Wu, Brian Uzzi
2012 — conf
CNetA: Network alignment by combining biological and topological features.
ISB
Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang
2012 J jnl
Efficient methods for identifying mutated driver pathways in cancer.
Bioinform.
Junfei Zhao, Shi-Hua Zhang, Ling-Yun Wu, Xiang-Sun Zhang
2012 J jnl
Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection.
BMC Syst. Biol.
Yong Wang, Qiao-Feng Wu, Chen Chen, Ling-Yun Wu, Xian-Zhong Yan, Shuguang Yu, Xiang-Sun Zhang, Fan-Rong Liang
2011 J jnl
An efficient network querying method based on conditional random fields.
Bioinform.
Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang
2010 J jnl
An information-flow-based model with dissipation, saturation and direction for active pathway inference.
BMC Syst. Biol.
Xian-Wen Ren, Xiaobo Zhou, Ling-Yun Wu, Xiang-Sun Zhang
2010 J jnl
Prediction of protein-RNA binding sites by a random forest method with combined features.
Bioinform.
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2010 J jnl
Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces.
BMC Syst. Biol.
Zheng Xia, Ling-Yun Wu, Xiaobo Zhou, Stephen T. C. Wong
2009 J jnl
Conditional random pattern algorithm for LOH inference and segmentation.
Bioinform.
Ling-Yun Wu, Xiaobo Zhou, Fuhai Li, Xiaorong Yang, Chung-Che Chang, Stephen T. C. Wong
2009 J jnl
Evaluating Protein Similarity from Coarse Structures.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yong Wang, Ling-Yun Wu, Ji-Hong Zhang, Zhong-Wei Zhan, Xiang-Sun Zhang, Luonan Chen
2009 J jnl
Self-organizing map approaches for the haplotype assembly problem.
Math. Comput. Simul.
Ling-Yun Wu, Zhen-Ping Li, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen
2008 J jnl
A fast haplotype inference method for large population genotype data.
Comput. Stat. Data Anal.
Ji-Hong Zhang, Ling-Yun Wu, Jian Chen, Xiang-Sun Zhang
2008 J jnl
Protein cavity clustering based on community structure of pocket similarity network.
Int. J. Bioinform. Res. Appl.
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2007 J jnl
An optimization approach to the reconstruction of positional DNA sequencing by hybridization with errors.
Eur. J. Oper. Res.
Ji-Hong Zhang, Ling-Yun Wu, Yu-Ying Zhao, Xiang-Sun Zhang
2007 J jnl
Analysis on multi-domain cooperation for predicting protein-protein interactions.
BMC Bioinform.
Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
2007 J jnl
Predicting gene ontology functions from protein's regional surface structures.
BMC Bioinform.
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, Xiang-Sun Zhang
2007 J jnl
Supervised classification of protein structures based on convex hull representation.
Int. J. Bioinform. Res. Appl.
Yong Wang, Ling-Yun Wu, Luonan Chen, Xiang-Sun Zhang
2006 C conf
Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network.
TAMC
Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
2006 J jnl
Capacitated facility location problem with general setup cost.
Comput. Oper. Res.
Ling-Yun Wu, Xiang-Sun Zhang, Ju-Liang Zhang
2005 J jnl
Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping.
J. Bioinform. Comput. Biol.
Xiang-Sun Zhang, Yong Wang, Zhong-Wei Zhan, Ling-Yun Wu, Luonan Chen
2005 J jnl
Haplotype assembly from aligned weighted SNP fragments.
Comput. Biol. Chem.
Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Sheng Wang, Xiang-Sun Zhang
2005 J jnl
Haplotype reconstruction from SNP fragments by minimum error correction.
Bioinform.
Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li, Xiang-Sun Zhang
2003 J jnl
Reconstruction of DNA sequencing by hybridization.
Bioinform.
Ji-Hong Zhang, Ling-Yun Wu, Xiang-Sun Zhang