Ling-Ling Zheng

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2023 J jnl
ChIPBase v3.0: the encyclopedia of transcriptional regulations of non-coding RNAs and protein-coding genes.
Nucleic Acids Res.
Junhong Huang, Wu-Jian Zheng, Ping Zhang, Qiao Lin, Zhi-Rong Chen, Jia-Jia Xuan, Chang Liu, Di Wu, Qiaojuan Huang, Ling-Ling Zheng, Shurong Liu, Keren Zhou, Liang-Hu Qu, Bin Li, Jian-Hua Yang
2023 J jnl
tModBase: deciphering the landscape of tRNA modifications and their dynamic changes from epitranscriptome data.
Nucleic Acids Res.
Hao-Tian Lei, Zhang-Hao Wang, Bin Li, Yang Sun, Shi-Qiang Mei, Jian-Hua Yang, Liang-Hu Qu, Ling-Ling Zheng
2022 J jnl
Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs.
Nucleic Acids Res.
Li Cai, Jia-Jia Xuan, Qiao Lin, Junhao Wang, Shurong Liu, Fangzhou Xie, Ling-Ling Zheng, Bin Li, Liang-Hu Qu, Jianhua Yang
2022 J jnl
tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data.
Nucleic Acids Res.
Jun-Hao Wang, Wen-Xin Chen, Shi-Qiang Mei, Yue-Dong Yang, Jian-Hua Yang, Liang-Hu Qu, Ling-Ling Zheng
2021 J jnl
ColorCells: a database of expression, classification and functions of lncRNAs in single cells.
Briefings Bioinform.
Ling-Ling Zheng, Jing-Hua Xiong, Wu-Jian Zheng, Jun-Hao Wang, Zi-Liang Huang, Zhi-Rong Chen, Xin-Yao Sun, Yi-Min Zheng, Keren Zhou, Bin Li, Shun Liu, Liang-Hu Qu, Jian-Hua Yang
2021 J jnl
deepBase v3.0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data.
Nucleic Acids Res.
Fangzhou Xie, Shurong Liu, Junhao Wang, Jia-Jia Xuan, Xiaoqin Zhang, Liang-Hu Qu, Ling-Ling Zheng, Jianhua Yang
2018 J jnl
RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data.
Nucleic Acids Res.
Jia-Jia Xuan, Wen-Ju Sun, Peng-Hui Lin, Keren Zhou, Shun Liu, Ling-Ling Zheng, Liang-Hu Qu, Jian-Hua Yang
2018 J jnl
dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease.
Nucleic Acids Res.
Ling-Ling Zheng, Keren Zhou, Shun Liu, Dingyao Zhang, Ze-Lin Wang, Zhi-Rong Chen, Jian-Hua Yang, Liang-Hu Qu
2017 J jnl
ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data.
Nucleic Acids Res.
Keren Zhou, Shun Liu, Wen-Ju Sun, Ling-Ling Zheng, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu
2016 J jnl
deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data.
Nucleic Acids Res.
Ling-Ling Zheng, Jun-Hao Li, Jie Wu, Wen-Ju Sun, Shun Liu, Ze-Lin Wang, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu
2016 J jnl
tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers.
Nucleic Acids Res.
Ling-Ling Zheng, Wei-Lin Xu, Shun Liu, Wen-Ju Sun, Jun-Hao Li, Jie Wu, Jian-Hua Yang, Liang-Hu Qu