Linda J. Broadbelt

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2023 J jnl
Pickaxe: a Python library for the prediction of novel metabolic reactions.
BMC Bioinform.
Kevin M. Shebek, Jonathan Strutz, Linda J. Broadbelt, Keith E. J. Tyo
2022 J jnl
MINE 2.0: enhanced biochemical coverage for peak identification in untargeted metabolomics.
Bioinform.
Jonathan Strutz, Kevin M. Shebek, Linda J. Broadbelt, Keith E. J. Tyo
2019 J jnl
Bayesian inference of metabolic kinetics from genome-scale multiomics data.
PLoS Comput. Biol.
Peter C. St. John, Jonathan Strutz, Linda J. Broadbelt, Keith E. J. Tyo, Yannick J. Bomble
2019 J jnl
Dynamic genome-scale cell-specific metabolic models reveal novel inter-cellular and intra-cellular metabolic communications during ovarian follicle development.
BMC Bioinform.
Beatriz Peñalver Bernabé, Ines Thiele, Eugene Galdones, Anaar Siletz, Sriram Chandrasekaran, Teresa K. Woodruff, Linda J. Broadbelt, Lonnie D. Shea
2018 J jnl
Application and comparison of derivative-free optimization algorithms to control and optimize free radical polymerization simulated using the kinetic Monte Carlo method.
Comput. Chem. Eng.
Hanyu Gao, Andreas Wächter, Ivan A. Konstantinov, Steven G. Arturo, Linda J. Broadbelt
2015 J jnl
Efficient searching and annotation of metabolic networks using chemical similarity.
Bioinform.
Dante A. Pertusi, Andrew E. Stine, Linda J. Broadbelt, Keith E. J. Tyo
2015 J jnl
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics.
J. Cheminformatics
James G. Jeffryes, Ricardo L. Colastani, Mona Elbadawi-Sidhu, Tobias Kind, Thomas D. Niehaus, Linda J. Broadbelt, Andrew D. Hanson, Oliver Fiehn, Keith E. J. Tyo, Christopher S. Henry
2011 J jnl
A Computational Approach To Design and Evaluate Enzymatic Reaction Pathways: Application to 1-Butanol Production from Pyruvate.
J. Chem. Inf. Model.
Di Wu, Qin Wang, Rajeev S. Assary, Linda J. Broadbelt, Goran Krilov
2010 J jnl
In silico feasibility of novel biodegradation pathways for 1, 2, 4-trichlorobenzene.
BMC Syst. Biol.
Stacey D. Finley, Linda J. Broadbelt, Vassily Hatzimanikatis
2005 J jnl
Exploring the diversity of complex metabolic networks.
Bioinform.
Vassily Hatzimanikatis, Chunhui Li, Justin A. Ionita, Christopher S. Henry, Matthew D. Jankowski, Linda J. Broadbelt
2003 J jnl
Ab Initio Stochastic Optimization of Conformational and Many-Body Degrees of Freedom.
J. Chem. Inf. Comput. Sci.
Scott A. McMillan, Ned C. Haubein, Randall Q. Snurr, Linda J. Broadbelt
2003 J jnl
Encoding of Polycyclic Si-Containing Molecules for Determining Species Uniqueness in Automated Mechanism Generation.
J. Chem. Inf. Comput. Sci.
Hsi-Wu Wong, Xuegeng Li, Mark T. Swihart, Linda J. Broadbelt
2003 J jnl
Many-Body Optimization Using an Ab Initio Monte Carlo Method.
J. Chem. Inf. Comput. Sci.
Ned C. Haubein, Scott A. McMillan, Linda J. Broadbelt