Lin Gao

81 papers Journal 65Unranked 15
YearRankTypeTitle / Venue / Authors
2026 J jnl
Bridging cancer cell-intrinsic driver genes and -extrinsic cell-cell communication with Driver2Comm.
PLoS Comput. Biol.
Runzhi Xie, Junping Li, Yuxuan Hu, Lin Gao
2026 J jnl
Semantic-enhanced heterogeneous graph learning for identifying ncRNAs associated with drug resistance.
Bioinform.
Hang Wei, Yuran Xie, Wenxiang Zhang, Linyang Li, Shuai Wu, Lin Gao
2025 — conf
DCAM: A Deep Context-Aware Model for Predicting the Function of Genomic Regulatory Regions.
BIBM
Xiao-Tai Huang, Chen Chen, Jiayue Wang, Bingbo Wang, Xingli Guo, Lin Gao
2025 — conf
Functional Module Identification in Spatial Cellular Communication Networks via Variational Graph Autoencoder.
BIBM
Xingli Guo, Yaxuan Hu, Yuxuan Hu, Bingbo Wang, Xiaotai Huang, Lin Gao
2025 J jnl
Identifying G-Protein Coupled Receptors Using Mixed-Feature Extraction Methods and Machine Learning Methods.
IEEE Access
Chunyan Ao, Lin Gao, Liang Yu
2025 J jnl
RNA language model and graph attention network for RNA and small molecule binding sites prediction.
Bioinform.
Saisai Sun, Jianyi Yang, Lin Gao, Pengyong Li, Yumeng Liu
2024 — conf
CellFeature: Cell and Feature Co-Embedding from Single-Cell Multi-Omics with Heterogeneous Graph Model.
BIBM
Enling Li, Lin Gao, Yusen Ye
2024 J jnl
Contrastive pre-training and 3D convolution neural network for RNA and small molecule binding affinity prediction.
Bioinform.
Saisai Sun, Lin Gao
2024 J jnl
DeepGRNCS: deep learning-based framework for jointly inferring gene regulatory networks across cell subpopulations.
Briefings Bioinform.
Yahui Lei, Xiao-Tai Huang, Xingli Guo, Kei Hang Katie Chan, Lin Gao
2024 J jnl
DiSMVC: a multi-view graph collaborative learning framework for measuring disease similarity.
Bioinform.
Hang Wei, Lin Gao, Shuai Wu, Yina Jiang, Bin Liu
2024 — conf
Exploring Hierarchical Structures of Cell Types in scRNA-seq Data.
ISBRA (2)
Haojie Zhai, Yusen Ye, Yuxuan Hu, Lanying Wang, Lin Gao
2024 — ed.
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024, Lisbon, Portugal, December 3-6, 2024
BIBM
Mario Cannataro, Huiru Jane Zheng, Lin Gao, Jianlin Cheng, João Luís de Miranda, Ester Zumpano, Xiaohua Hu, Young-Rae Cho, Taesung Park
2024 J jnl
Statistical modeling and significance estimation of multi-way chromatin contacts with HyperloopFinder.
Briefings Bioinform.
Weibing Wang, Yusen Ye, Lin Gao
2023 — conf
Application of Multi-Dimensional SNV Features in Supervised Learning.
BIBM
Liang Yu, Lin Gao, Bo Li, Hongxia Hao, Lu Chen
2023 J jnl
GOLF-Net: Global and local association fusion network for COVID-19 lung infection segmentation.
Comput. Biol. Medicine
Xinyu Xu, Lin Gao, Liang Yu
2023 — conf
Gene Expression Profile Prediction under Drug Action Based on Generative Adversarial Networks.
BIBM
Liang Yu, Huan Zhu, Da Dong, Lin Gao
2023 J jnl
HiSV: A control-free method for structural variation detection from Hi-C data.
PLoS Comput. Biol.
Junping Li, Lin Gao, Yusen Ye
2023 J jnl
Identification of a novel gene signature for the prognosis of sepsis.
Comput. Biol. Medicine
Kai Yang, Lin Gao, Hongxia Hao, Liang Yu
2023 — conf
Mining disease-associated genes based on heterogeneous graph transformer.
BIBM
Xingli Guo, Liang Lu, Yao Yun, Lin Gao
2023 J jnl
Potent antibiotic design via guided search from antibacterial activity evaluations.
Bioinform.
Lu Chen, Liang Yu, Lin Gao
2023 — conf
SpriteHyper2vec: A SCSPRITE Data Completion Method Based on Hypergraph Random Walk.
CCIS
Yamin Liu, Yusen Ye, Lin Gao
2022 J jnl
Cancer classification based on multiple dimensions: SNV patterns.
Comput. Biol. Medicine
Bo Li, Liang Yu, Lin Gao
2022 J jnl
Conserved Control Path in Multilayer Networks.
Entropy
Bingbo Wang, Xiujuan Ma, Cunchi Wang, Mingjie Zhang, Qianhua Gong, Lin Gao
2022 — conf
IMRDriver: coding and non-coding cancer driver genes identification based on network propagation.
BIBM
Song Wang, Xiao-Tai Huang, Kei Hang Katie Chan, Lin Gao
2022 J jnl
MiRNA-disease association prediction based on meta-paths.
Briefings Bioinform.
Liang Yu, Yujia Zheng, Lin Gao
2022 J jnl
Multidrug representation learning based on pretraining model and molecular graph for drug interaction and combination prediction.
Bioinform.
Shujie Ren, Liang Yu, Lin Gao
2022 — conf
Predicting the functional effects of human non-coding variants based on stacking ensemble learning.
BIBM
Zepeng Liu, Xiao-Tai Huang, Kei Hang Katie Chan, Lin Gao
2022 J jnl
Reconstruction of human protein-coding gene functional association network based on machine learning.
Briefings Bioinform.
Xiaotai Huang, Songwei Jia, Lin Gao, Jing Wu
2022 J jnl
Research progress of miRNA-disease association prediction and comparison of related algorithms.
Briefings Bioinform.
Liang Yu, Yujia Zheng, Bingyi Ju, Chunyan Ao, Lin Gao
2021 J jnl
CCIP: predicting CTCF-mediated chromatin loops with transitivity.
Bioinform.
Weibing Wang, Lin Gao, Yusen Ye, Yong Gao
2021 J jnl
CeNet Omnibus: an R/Shiny application to the construction and analysis of competing endogenous RNA network.
BMC Bioinform.
Xiao Wen, Lin Gao, Tuo Song, Chaoqun Jiang
2021 J jnl
Evaluation and comparison of multi-omics data integration methods for cancer subtyping.
PLoS Comput. Biol.
Ran Duan, Lin Gao, Yong Gao, Yuxuan Hu, Han Xu, Mingfeng Huang, Kuo Song, Hongda Wang, Yongqiang Dong, Chaoqun Jiang, Chenxing Zhang, Songwei Jia
2021 J jnl
Improving Single-Cell RNA-seq Clustering by Integrating Pathways.
Briefings Bioinform.
Chenxing Zhang, Lin Gao, Bingbo Wang, Yong Gao
2021 J jnl
Predicting therapeutic drugs for hepatocellular carcinoma based on tissue-specific pathways.
PLoS Comput. Biol.
Liang Yu, Meng Wang, Yang Yang, Fengdan Xu, Xu Zhang, Fei Xie, Lin Gao, Xiangzhi Li
2021 J jnl
Prediction of drug-target interactions based on multi-layer network representation learning.
Neurocomputing
Yifan Shang, Lin Gao, Quan Zou, Liang Yu
2021 J jnl
The peripheral and core regions of virus-host network of COVID-19.
Briefings Bioinform.
Bingbo Wang, Xianan Dong, Jie Hu, Xiujuan Ma, Chao Han, Yajun Wang, Lin Gao
2020 J jnl
A Node Embedding Framework for Integration of Similarity-based Drug Combination Prediction.
CoRR
Liang Yu, Mingfei Xia, Lin Gao
2020 J jnl
C3: connect separate connected components to form a succinct disease module.
BMC Bioinform.
Bingbo Wang, Jie Hu, Yajun Wang, Chenxing Zhang, Yuanjun Zhou, Liang Yu, Xingli Guo, Lin Gao, Yunru Chen
2020 J jnl
Cluster correlation based method for lncRNA-disease association prediction.
BMC Bioinform.
Qianqian Yuan, Xingli Guo, Yang Ren, Xiao Wen, Lin Gao
2020 J jnl
Detection of Driver Modules with Rarely Mutated Genes in Cancers.
IEEE ACM Trans. Comput. Biol. Bioinform.
Feng Li, Lin Gao, Bingbo Wang
2019 J jnl
Human Pathway-Based Disease Network.
IEEE ACM Trans. Comput. Biol. Bioinform.
Liang Yu, Lin Gao
2019 J jnl
miES: predicting the essentiality of miRNAs with machine learning and sequence features.
Bioinform.
Fei Song, Chunmei Cui, Lin Gao, Qinghua Cui
2018 J jnl
Extracting Stage-Specific and Dynamic Modules Through Analyzing Multiple Networks Associated with Cancer Progression.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaoke Ma, Wanxin Tang, Peizhuo Wang, Xingli Guo, Lin Gao
2018 J jnl
Feature related multi-view nonnegative matrix factorization for identifying conserved functional modules in multiple biological networks.
BMC Bioinform.
Peizhuo Wang, Lin Gao, Yuxuan Hu, Feng Li
2018 — conf
Inferring Dysregulated Pathways of Driving Cancer Subtypes Through Multi-omics Integration.
ISBRA
Kai Shi, Lin Gao, Bingbo Wang
2018 J jnl
Viewing the Meso-Scale Structures in Protein-Protein Interaction Networks Using 2-Clubs.
IEEE Access
Songwei Jia, Lin Gao, Yong Gao, James Nastos, Xiao Wen, Xiaotai Huang, Haiyang Wang
2018 J jnl
lncSLdb: a resource for long non-coding RNA subcellular localization.
Database J. Biol. Databases Curation
Xiao Wen, Lin Gao, Xingli Guo, Xing Li, Xiaotai Huang, Ying Wang, Haifu Xu, Ruijie He, Chenglong Jia, Feixiang Liang
2017 J jnl
Drug repositioning based on triangularly balanced structure for tissue-specific diseases in incomplete interactome.
Artif. Intell. Medicine
Liang Yu, Jin Zhao, Lin Gao
2017 J jnl
Predicting potential treatments for complex diseases based on miRNA and tissue specificity.
CoRR
Liang Yu, Jin Zhao, Lin Gao
2017 J jnl
Prediction of Novel Drugs for Hepatocellular Carcinoma Based on Multi-Source Random Walk.
IEEE ACM Trans. Comput. Biol. Bioinform.
Liang Yu, Ruidan Su, Bingbo Wang, Long Zhang, Yapeng Zou, Jing Zhang, Lin Gao
2016 J jnl
Exploring triad-rich substructures by graph-theoretic characterizations in complex networks.
CoRR
Songwei Jia, Lin Gao, Yong Gao, James Nastos, Xiao Wen, Xindong Zhang, Haiyang Wang
2016 J jnl
Integrating phenotypic features and tissue-specific information to prioritize disease genes.
Sci. China Inf. Sci.
Yue Deng, Lin Gao, Xingli Guo, Bingbo Wang
2016 J jnl
Network-Based Method for Inferring Cancer Progression at the Pathway Level from Cross-Sectional Mutation Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hao Wu, Lin Gao, Nikola K. Kasabov
2016 J jnl
Systematic tracking of coordinated differential network motifs identifies novel disease-related genes by integrating multiple data.
Neurocomputing
Kai Shi, Lin Gao, Bingbo Wang
2016 J jnl
The extraction of drug-disease correlations based on module distance in incomplete human interactome.
BMC Syst. Biol.
Liang Yu, Bingbo Wang, Xiaoke Ma, Lin Gao
2015 J jnl
Erratum to: ppiPre: predicting protein-protein interactions by combining heterogeneous features.
BMC Syst. Biol.
Yue Deng, Lin Gao, Bingbo Wang
2015 J jnl
Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity.
BMC Bioinform.
Xindong Zhang, Lin Gao, Zhi-Ping Liu, Luonan Chen
2015 J jnl
Identifying overlapping mutated driver pathways by constructing gene networks in cancer.
BMC Bioinform.
Hao Wu, Lin Gao, Feng Li, Fei Song, Xiaofei Yang, Nikola K. Kasabov
2013 J jnl
Abstracting minimal security-relevant behaviors for malware analysis.
J. Comput. Virol. Hacking Tech.
Ying Cao, Qiguang Miao, Jiachen Liu, Lin Gao
2013 J jnl
Maximizing modularity intensity for community partition and evolution.
Inf. Sci.
Peng-Gang Sun, Lin Gao, Yang Yang
2013 J jnl
ppiPre: predicting protein-protein interactions by combining heterogeneous features.
BMC Syst. Biol.
Yue Deng, Lin Gao, Bingbo Wang
2012 J jnl
An algorithm for network motif discovery in biological networks.
Int. J. Data Min. Bioinform.
Guimin Qin, Lin Gao
2012 J jnl
Discovering protein complexes in protein interaction networks via exploring the weak ties effect.
BMC Syst. Biol.
Xiaoke Ma, Lin Gao
2012 J jnl
Predicting protein complexes in protein interaction networks using a core-attachment algorithm based on graph communicability.
Inf. Sci.
Xiaoke Ma, Lin Gao
2012 — conf
ppiPre - an R package for predicting protein-protein interactions.
ISB
Yue Deng, Lin Gao
2011 J jnl
A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification.
Comput. Biol. Chem.
Liang Yu, Lin Gao, Kui Li, Yi Zhao, David K. Y. Chiu
2011 — conf
Global Network Alignment Based on Multiple Hub Seeds.
BIBM
Bingbo Wang, Lin Gao
2011 J jnl
Identification of conserved protein complexes by module alignment.
Int. J. Data Min. Bioinform.
Peng-Gang Sun, Lin Gao, Jia Song
2010 J jnl
A centrality measure based on spectral optimization of modularity density.
Sci. China Inf. Sci.
Lidong Fu, Lin Gao, Xiaoke Ma
2010 J jnl
A hybrid clustering algorithm for identifying modules in Protein - Protein Interaction networks.
Int. J. Data Min. Bioinform.
Liang Yu, Lin Gao, Peng-Gang Sun
2010 — conf
Identification of core-attachment complexes based on maximal frequent patterns in protein-protein interaction networks.
BIBM Workshops
Liang Yu, Lin Gao, Chuiliang Kong
2010 J jnl
Quantitative function for community structure detection.
Int. J. Data Min. Model. Manag.
Liang Yu, Lin Gao, Danyang Wang, Shaofeng Fu
2010 J jnl
Spectral clustering for detecting protein complexes in protein-protein interaction (PPI) networks.
Math. Comput. Model.
Guimin Qin, Lin Gao
2009 J jnl
Clustering Algorithms for Detecting Functional Modules in protein Interaction Networks.
J. Bioinform. Comput. Biol.
Lin Gao, Peng-Gang Sun, Jia Song
2009 J jnl
Evaluation of subgraph searching algorithms detecting network motif in biological networks.
Frontiers Comput. Sci. China
Jialu Hu, Lin Gao, Guimin Qin
2008 J jnl
MOHCS: Towards Mining Overlapping Highly Connected Subgraphs
CoRR
Xiahong Lin, Lin Gao, Kefei Chen, David K. Y. Chiu
2007 J jnl
The Hamiltonian Cycle Problem Based on DNA Computing.
Int. J. Unconv. Comput.
Wenbin Liu, Xiangou Zhu, Lin Gao
2006 J jnl
Self-Assembly Based Models and Computation Algorithms for DNA.
Int. J. Unconv. Comput.
Lin Gao, Wenbin Liu, Weifeng Li, David K. Y. Chiu
2005 — conf
A DNA Based Evolutionary Algorithm for the Minimal Set Cover Problem.
ICIC (2)
Wenbin Liu, Xiangou Zhu, Guandong Xu, Qiang Zhang, Lin Gao
2003 J jnl
DNA Sequence Design Based on Template Strategy.
J. Chem. Inf. Comput. Sci.
Wenbin Liu, Shudong Wang, Lin Gao, Fengyue Zhang, Jin Xu
2003 J jnl
Solving the 3-SAT Problem Based on DNA Computing.
J. Chem. Inf. Comput. Sci.
Wenbin Liu, Lin Gao, Xiangrong Liu, Shudong Wang, Jin Xu