Limsoon Wong

250 papers A* 17A 8B 15C 5Misc 6Journal 160Unranked 33
YearRankTypeTitle / Venue / Authors
2025 J jnl
AI4X Roadmap: Artificial Intelligence for the advancement of scientific pursuit and its future directions.
CoRR
Stephen G. Dale, Nikita Kazeev, Alastair J. A. Price, Victor Posligua, Stephan Roche, O. Anatole von Lilienfeld, Konstantin S. Novoselov, Xavier Bresson, Gianmarco Mengaldo, Xudong Chen, Terence J. O'Kane, Emily R. Lines, Matthew J. Allen, Amandine E. Debus, Clayton Miller, Jiayu Zhou, Hiroko H. Dodge, David Rousseau, Andrey Ustyuzhanin, Ziyun Yan, Mario Lanza, Fabio Sciarrino, Ryo Yoshida, Zhidong Leong, Teck Leong Tan, Qianxiao Li, Adil Kabylda, Igor Poltavsky, Alexandre Tkatchenko, Sherif Abdulkader Tawfik, Prathami Divakar Kamath, Théo Jaffrelot Inizan, Kristin A. Persson, Bryant Y. Li, Vir Karan, Chenru Duan, Haojun Jia, Qiyuan Zhao, Hiroyuki Hayashi, Atsuto Seko, Isao Tanaka, Omar M. Yaghi, Tim Gould, Bun Chan, Stefan Vuckovic, Tianbo Li, Min Lin, Zehcen Tang, Yang Li, Yong Xu, Amrita Joshi, Xiaonan Wang, Leonard W. T. Ng, Sergei V. Kalinin, Mahshid Ahmadi, Jiyizhe Zhang, Shuyuan Zhang, Alexei A. Lapkin, Ming Xiao, Zhe Wu, Kedar Hippalgaonkar, Limsoon Wong, Lorenzo Bastonero, Nicola Marzari, Dorye Luis Esteras Cordoba, Andrei Tomut, Alba Quinones Andrade, Jose-Hugo Garcia
2025 J jnl
Benchmarking recent computational tools for DNA-binding protein identification.
Briefings Bioinform.
Xizi Luo, Amadeus Song Yi Chi, Andre Huikai Lin, Tze Jet Ong, Limsoon Wong, Chowdhury Rafeed Rahman
2025 J jnl
Editorial: Guidelines for Credible Machine Learning in Computational Biology.
J. Bioinform. Comput. Biol.
Limsoon Wong
2025 J jnl
Establishing the Asia & Pacific Bioinformatics Joint Congress: a historic milestone in regional bioinformatics collaboration.
Briefings Bioinform.
Asif M. Khan, Susumu Goto, Kenta Nakai, Limsoon Wong, Diane E. Kovats, Yuki Saito, Shinya Ikematsu, Yoshihiro Yamanishi, Nurul Salwanie Che Wahid, Harpreet Singh, Pradeep Eranti, Yi-Ping Phoebe Chen, Tae-Min Kim, Shinn-Ying Ho, Jessica Cara Mar, Wataru Iwasaki, Jayaraman Valadi, Prashanth Suravajhala, Christian Schönbach, Tin Wee Tan, Shoba Ranganathan, Kiyoko F. Aoki-Kinoshita
2025 J jnl
GCfix: a fast and accurate fragment length-specific method for correcting GC bias in cell-free DNA.
Bioinform.
Chowdhury Rafeed Rahman, Zhong Wee Poh, Anders Jacobsen Skanderup, Limsoon Wong
2025 J jnl
Protrec2: tissue-specific network-based missing protein recovery method.
Briefings Bioinform.
Weijia Kong, Wilson Wen Bin Goh, Limsoon Wong
2024 — conf
An Intensional Expressiveness Gap of Comprehension Syntax.
Tannen's Festschrift
Limsoon Wong
2024 J jnl
How much can ChatGPT really help computational biologists in programming?
J. Bioinform. Comput. Biol.
Chowdhury Rafeed Rahman, Limsoon Wong
2024 J jnl
Ten quick tips for ensuring machine learning model validity.
PLoS Comput. Biol.
Wilson Wen Bin Goh, Mohammad Neamul Kabir, Sehwan Yoo, Limsoon Wong
2024 J jnl
What can scatterplots teach us about doing data science better?
Int. J. Data Sci. Anal.
Wilson Wen Bin Goh, Reuben Jyong Kiat Foo, Limsoon Wong
2023 J jnl
Evaluating network-based missing protein prediction using p-values, Bayes Factors, and probabilities.
J. Bioinform. Comput. Biol.
Wilson Wen Bin Goh, Weijia Kong, Limsoon Wong
2023 J jnl
How much can ChatGPT really help Computational Biologists in Programming?
CoRR
Chowdhury Rafeed Rahman, Limsoon Wong
2023 J jnl
Obstacles to effective model deployment in healthcare.
J. Bioinform. Comput. Biol.
Wei Xin Chan, Limsoon Wong
2023 J jnl
ProInfer: An interpretable protein inference tool leveraging on biological networks.
PLoS Comput. Biol.
Hui Peng, Limsoon Wong, Wilson Wen Bin Goh
2023 J jnl
ProJect: a powerful mixed-model missing value imputation method.
Briefings Bioinform.
Weijia Kong, Bertrand Jern Han Wong, Harvard Wai Hann Hui, Kai Peng Lim, Yulan Wang, Limsoon Wong, Wilson Wen Bin Goh
2022 J jnl
Accounting for treatment during the development or validation of prediction models.
J. Bioinform. Comput. Biol.
Wei Xin Chan, Limsoon Wong
2022 J jnl
EnsembleFam: towards more accurate protein family prediction in the twilight zone.
BMC Bioinform.
Mohammad Neamul Kabir, Limsoon Wong
2022 J jnl
Iterating on multiple collections in synchrony.
J. Funct. Program.
Stefano Perna, Val Tannen, Limsoon Wong
2021 J jnl
Genetic source completeness of HIV-1 circulating recombinant forms (CRFs) predicted by multi-label learning.
Bioinform.
Runbin Tang, Zuguo Yu, Yuanlin Ma, Yaoqun Wu, Yi-Ping Phoebe Chen, Limsoon Wong, Jinyan Li
2021 J jnl
Identifying collateral and synthetic lethal vulnerabilities within the DNA-damage response.
BMC Bioinform.
Pietro Pinoli, Sriganesh Srihari, Limsoon Wong, Stefano Ceri
2021 J jnl
PDR: a new genome assembly evaluation metric based on genetics concerns.
Bioinform.
Luyu Xie, Limsoon Wong
2021 J jnl
What can Venn diagrams teach us about doing data science better?
Int. J. Data Sci. Anal.
Sung Yang Ho, Sophia Tan, Chun Chau Sze, Limsoon Wong, Wilson Wen Bin Goh
2020 J jnl
Allowing mutations in maximal matches boosts genome compression performance.
Bioinform.
Yuansheng Liu, Limsoon Wong, Jinyan Li
2020 J jnl
Avoid Oversimplifications in Machine Learning: Going beyond the Class-Prediction Accuracy.
Patterns
Sung Yang Ho, Limsoon Wong, Wilson Wen Bin Goh
2020 J jnl
Extensions of the External Validation for Checking Learned Model Interpretability and Generalizability.
Patterns
Sung Yang Ho, Kimberly Phua, Limsoon Wong, Wilson Wen Bin Goh
2020 J jnl
The Birth of Bio-data Science: Trends, Expectations, and Applications.
Genom. Proteom. Bioinform.
Wilson Wen Bin Goh, Limsoon Wong
2019 J jnl
Advanced bioinformatics methods for practical applications in proteomics.
Briefings Bioinform.
Wilson Wen Bin Goh, Limsoon Wong
2019 J jnl
kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers.
Bioinform.
Peng Jiang, Jie Luo, Yiqi Wang, Pingji Deng, Bertil Schmidt, Xiangjun Tang, Ningjiang Chen, Limsoon Wong, Liang Zhao
2018 J jnl
Discovering pan-correlation patterns from time course data sets by efficient mining algorithms.
Computing
Qian Liu, Shameek Ghosh, Jinyan Li, Limsoon Wong, Kotagiri Ramamohanarao
2018 J jnl
Introduction to Selected Papers from GIW2018.
J. Bioinform. Comput. Biol.
Jinyan Li, Kenta Nakai, Yun Zheng, Kengo Sato, Limsoon Wong
2018 J jnl
Protein complex prediction by date hub removal.
Comput. Biol. Chem.
Iana Pyrogova, Limsoon Wong
2018 J jnl
SPSNet: subpopulation-sensitive network-based analysis of heterogeneous gene expression data.
BMC Syst. Biol.
Abha Belorkar, Rajanikanth Vadigepalli, Limsoon Wong
2018 J jnl
TICA: Transcriptional Interaction and Coregulation Analyzer.
Genom. Proteom. Bioinform.
Stefano Perna, Pietro Pinoli, Stefano Ceri, Limsoon Wong
2017 J jnl
Editorial - Bioinformatics development at the BGRS\SB conference series: 10th anniversary.
J. Bioinform. Comput. Biol.
Yuriy L. Orlov, Nikolay A. Kolchanov, Ralf Hofestädt, Limsoon Wong
2017 J jnl
High-speed and high-ratio referential genome compression.
Bioinform.
Yuansheng Liu, Hui Peng, Limsoon Wong, Jinyan Li
2017 J jnl
MapReduce for accurate error correction of next-generation sequencing data.
Bioinform.
Liang Zhao, Qingfeng Chen, Wencui Li, Peng Jiang, Limsoon Wong, Jinyan Li
2017 J jnl
OrthoGNC: A Software for Accurate Identification of Orthologs Based on Gene Neighborhood Conservation.
Genom. Proteom. Bioinform.
Soheil Jahangiri-Tazehkand, Limsoon Wong, Changiz Eslahchi
2017 J jnl
Protein complex-based analysis is resistant to the obfuscating consequences of batch effects - a case study in clinical proteomics.
BMC Genom.
Wilson Wen Bin Goh, Limsoon Wong
2017 J jnl
Redhyte: a self-diagnosing, self-correcting, and helpful hypothesis analysis platform.
J. Inf. Telecommun.
Wei Zhong Toh, Kwok Pui Choi, Limsoon Wong
2016 C conf
Efficient Mining of Pan-Correlation Patterns from Time Course Data.
ADMA
Qian Liu, Jinyan Li, Limsoon Wong, Kotagiri Ramamohanarao
2016 J jnl
Evaluating feature-selection stability in next-generation proteomics.
J. Bioinform. Comput. Biol.
Wilson Wen Bin Goh, Limsoon Wong
2016 J jnl
GFS: fuzzy preprocessing for effective gene expression analysis.
BMC Bioinform.
Abha Belorkar, Limsoon Wong
2016 — conf
Redhyte: Towards a Self-diagnosing, Self-correcting, and Helpful Analytic Platform.
ACIIDS (2)
Wei Zhong Toh, Kwok Pui Choi, Limsoon Wong
2016 J jnl
Spectra-first feature analysis in clinical proteomics - A case study in renal cancer.
J. Bioinform. Comput. Biol.
Wilson Wen Bin Goh, Limsoon Wong
2015 J jnl
A quantum leap in the reproducibility, precision, and sensitivity of gene expression profile analysis even when sample size is extremely small.
J. Bioinform. Comput. Biol.
Kevin Lim, Zhenhua Li, Kwok Pui Choi, Limsoon Wong
2015 J jnl
Burial Level Change Defines a High Energetic Relevance for Protein Binding Interfaces.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zhenhua Li, Ying He, Limsoon Wong, Jinyan Li
2015 J jnl
From the static interactome to dynamic protein complexes: Three challenges.
J. Bioinform. Comput. Biol.
Chern Han Yong, Limsoon Wong
2015 J jnl
Hi-Jack: a novel computational framework for pathway-based inference of host-pathogen interactions.
Bioinform.
Dimitrios Kleftogiannis, Limsoon Wong, John A. C. Archer, Panos Kalnis
2015 J jnl
John Wooley and JBCB.
J. Bioinform. Comput. Biol.
Ming Li, Limsoon Wong
2015 B conf
Regularizing predicted complexes by mutually exclusive protein-protein interactions.
ASONAM
Osamu Maruyama, Limsoon Wong
2015 J jnl
Supporting Exploratory Hypothesis Testing and Analysis.
ACM Trans. Knowl. Discov. Data
Guimei Liu, Haojun Zhang, Mengling Feng, Limsoon Wong, See-Kiong Ng
2015 J jnl
Two scenarios for overcoming drug resistance by co-targeting.
Int. J. Bioinform. Res. Appl.
Golnaz Taheri, Marzieh Ayati, Limsoon Wong, Changiz Eslahchi
2014 J jnl
A Flexible Approach to Finding Representative Pattern Sets.
IEEE Trans. Knowl. Data Eng.
Guimei Liu, Haojun Zhang, Limsoon Wong
2014 J jnl
A semi-automated methodology for finding lipid-related GO terms.
Database J. Biol. Databases Curation
Mengyuan Fan, Hong Sang Low, Markus R. Wenk, Limsoon Wong
2014 J jnl
Coupling Graphs, Efficient Algorithmsand B-Cell Epitope Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Liang Zhao, Steven C. H. Hoi, Zhenhua Li, Limsoon Wong, Hung T. Nguyen, Jinyan Li
2014 J jnl
Discovery of small protein complexes from PPI networks with size-specific supervised weighting.
BMC Syst. Biol.
Chern Han Yong, Osamu Maruyama, Limsoon Wong
2014 J jnl
Finding consistent disease subnetworks using PFSNet.
Bioinform.
Kevin Lim, Limsoon Wong
2014 J jnl
Guest Editorial for the International Conference on Genome Informatics (GIW 2013).
IEEE ACM Trans. Comput. Biol. Bioinform.
Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong
2014 J jnl
Integrating water exclusion theory into βcontacts to predict binding free energy changes and binding hot spots.
BMC Bioinform.
Qian Liu, Steven C. H. Hoi, Chee Keong Kwoh, Limsoon Wong, Jinyan Li
2014 J jnl
JBCB, the first decade.
J. Bioinform. Comput. Biol.
John C. Wooley, Ming Li, Limsoon Wong
2014 J jnl
LipidGO: database for lipid-related GO terms and applications.
Bioinform.
Mengyuan Fan, Hong Sang Low, Hufeng Zhou, Markus R. Wenk, Limsoon Wong
2014 J jnl
Using data fusion for scoring reliability of protein-protein interactions.
J. Bioinform. Comput. Biol.
Alireza Vazifedoost, Maseud Rahgozar, Behzad Moshiri, Mehdi Sadeghi, Hon Nian Chua, See-Kiong Ng, Limsoon Wong
2014 J jnl
eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains.
BMC Bioinform.
Michal Wozniak, Limsoon Wong, Jerzy Tiuryn
2013 J jnl
A Performance Study of Three Disk-based Structures for Indexing and Querying Frequent Itemsets.
Proc. VLDB Endow.
Guimei Liu, Andre Suchitra, Limsoon Wong
2013 A* conf
A dichotomy in the intensional expressive power of nested relational calculi augmented with aggregate functions and a powerset operator.
PODS
Limsoon Wong
2013 J jnl
An Introduction to some New Results in Bioinformatics and Computational Biology.
J. Bioinform. Comput. Biol.
Limsoon Wong
2013 J jnl
Disruption of protein complexes.
J. Bioinform. Comput. Biol.
Golnaz Taheri, Mahnaz Habibi, Limsoon Wong, Changiz Eslahchi
2013 — ch.
Emerging Pattern Based Rules Characterizing Subtypes of Leukemia.
Contrast Data Mining
Jinyan Li, Limsoon Wong
2013 — ed.
In Search of Elegance in the Theory and Practice of Computation - Essays Dedicated to Peter Buneman
In Search of Elegance in the Theory and Practice of Computation
Val Tannen, Limsoon Wong, Leonid Libkin, Wenfei Fan, Wang-Chiew Tan, Michael P. Fourman
2013 J jnl
International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions.
BMC Syst. Biol.
Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong
2013 J jnl
PLncDB: plant long non-coding RNA database.
Bioinform.
Jingjing Jin, Jun Liu, Huan Wang, Limsoon Wong, Nam-Hai Chua
2013 J jnl
Progress in Computational Studies of Host-pathogen Interactions.
J. Bioinform. Comput. Biol.
Hufeng Zhou, Jingjing Jin, Limsoon Wong
2013 J jnl
Random forests on Hadoop for genome-wide association studies of multivariate neuroimaging phenotypes.
BMC Bioinform.
Yue Wang, Wilson Wen Bin Goh, Limsoon Wong, Giovanni Montana
2013 J jnl
Stringent DDI-based Prediction of H. sapiens-M. tuberculosis H37Rv Protein-Protein Interactions.
BMC Syst. Biol.
Hufeng Zhou, Javad Rezaei, Hugo Willy, Shangzhi Gao, Jingjing Jin, Mengyuan Fan, Chern Han Yong, Michal Wozniak, Limsoon Wong
2013 J jnl
Structural analysis on mutation residues and interfacial water molecules for human TIM disease understanding.
BMC Bioinform.
Zhenhua Li, Ying He, Qian Liu, Liang Zhao, Limsoon Wong, Chee Keong Kwoh, Hung T. Nguyen, Jinyan Li
2013 J jnl
The 24th International Conference on genome Informatics, Giw2013, in Singapore.
J. Bioinform. Comput. Biol.
Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong
2013 — conf
The Dichotomous Intensional Expressive Power of the Nested Relational Calculus with Powerset.
In Search of Elegance in the Theory and Practice of Computation
Limsoon Wong
2012 J jnl
A Short Introduction to Some Recent Progress in phylogenetic Network Reconstruction, genome Mapping, gene Expression Analysis, molecular Dynamic Simulation, and Other Problems in Bioinformatics.
J. Bioinform. Comput. Biol.
Limsoon Wong
2012 J jnl
A network-based maximum link approach towards MS identifies potentially important roles for undetected ARRB1/2 and ACTB in liver cancer progression.
Int. J. Bioinform. Res. Appl.
Wilson Wen Bin Goh, Yie Hou Lee, Zubaidah M. Ramdzan, Maxey C. M. Chung, Limsoon Wong, Marek J. Sergot
2012 A* conf
AssocExplorer: an association rule visualization system for exploratory data analysis.
KDD
Guimei Liu, Andre Suchitra, Haojun Zhang, Mengling Feng, See-Kiong Ng, Limsoon Wong
2012 J jnl
B-cell epitope prediction through a graph model.
BMC Bioinform.
Liang Zhao, Limsoon Wong, Lanyuan Lu, Steven C. H. Hoi, Jinyan Li
2012 J jnl
CMPF: Class-switching minimized pathfinding in metabolic networks.
BMC Bioinform.
Kevin Lim, Limsoon Wong
2012 J jnl
Conservation of water molecules in protein binding interfaces.
Int. J. Bioinform. Res. Appl.
Zhenhua Li, Ying He, Longbing Cao, Limsoon Wong, Jinyan Li
2012 J jnl
Detection of Outlier Residues for Improving Interface Prediction in Protein Heterocomplexes.
IEEE ACM Trans. Comput. Biol. Bioinform.
Peng Chen, Limsoon Wong, Jinyan Li
2012 J jnl
Discovery of Protein Complexes with Core-Attachment Structures from Tandem Affinity Purification (TAP) Data.
J. Comput. Biol.
Min Wu, Xiaoli Li, Chee Keong Kwoh, See-Kiong Ng, Limsoon Wong
2012 J jnl
Embracing noise to improve cross-batch prediction accuracy.
BMC Syst. Biol.
Chuan Hock Koh, Limsoon Wong
2012 A* conf
Finding minimum representative pattern sets.
KDD
Guimei Liu, Haojun Zhang, Limsoon Wong
2012 J jnl
Improved statistical model checking methods for pathway analysis.
BMC Bioinform.
Chuan Hock Koh, Sucheendra K. Palaniappan, P. S. Thiagarajan, Limsoon Wong
2012 J jnl
IntPath-an integrated pathway gene relationship database for model organisms and important pathogens.
BMC Syst. Biol.
Hufeng Zhou, Jingjing Jin, Haojun Zhang, Bo Yi, Michal Wozniak, Limsoon Wong
2012 J jnl
Predicting Protein Functions from Protein Interaction Networks.
Int. J. Knowl. Discov. Bioinform.
Hon Nian Chua, Limsoon Wong
2012 J jnl
Progressive dry-core-wet-rim hydration trend in a nested-ring topology of protein binding interfaces.
BMC Bioinform.
Zhenhua Li, Ying He, Limsoon Wong, Jinyan Li
2012 J jnl
Response: an empirical comparison of several recent epistatic interaction detection methods.
Bioinform.
Yue Wang, Guimei Liu, Mengling Feng, Limsoon Wong
2012 J jnl
Supervised maximum-likelihood weighting of composite protein networks for complex prediction.
BMC Syst. Biol.
Chern Han Yong, Guimei Liu, Hon Nian Chua, Limsoon Wong
2012 J jnl
The role of miRNAs in complex formation and control.
Bioinform.
Wilson Wen Bin Goh, Hirotaka Oikawa, Judy Chia Ghee Sng, Marek J. Sergot, Limsoon Wong
2011 J jnl
An empirical comparison of several recent epistatic interaction detection methods.
Bioinform.
Yue Wang, Guimei Liu, Mengling Feng, Limsoon Wong
2011 J jnl
Antibody-Specified B-Cell Epitope Prediction in Line with the Principle of Context-Awareness.
IEEE ACM Trans. Comput. Biol. Bioinform.
Liang Zhao, Limsoon Wong, Jinyan Li
2011 J jnl
Brief Introduction to Some New Papers on Lateral Transfer Reconstruction, Drug Candidate Screening, Disease Gene Identification, and Other Results.
J. Bioinform. Comput. Biol.
Limsoon Wong
2011 J jnl
CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains.
Bioinform.
Michal Wozniak, Limsoon Wong, Jerzy Tiuryn
2011 J jnl
Controlling False Positives in Association Rule Mining
CoRR
Guimei Liu, Haojun Zhang, Limsoon Wong
2011 J jnl
Controlling False Positives in Association Rule Mining.
Proc. VLDB Endow.
Guimei Liu, Haojun Zhang, Limsoon Wong
2011 J jnl
DBAC: A simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts.
BMC Syst. Biol.
Zhenhua Li, Limsoon Wong, Jinyan Li
2011 J jnl
Finding consistent disease subnetworks across microarray datasets.
BMC Bioinform.
Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong
2011 J jnl
Introduction - Some New Results and Tools for Protein Function Prediction, RNA Target Site Prediction, Genotype Calling, Environmental Genomics, and More.
J. Bioinform. Comput. Biol.
Limsoon Wong
2011 J jnl
MIRACH: efficient model checker for quantitative biological pathway models.
Bioinform.
Chuan Hock Koh, Masao Nagasaki, Ayumu Saito, Chen Li, Limsoon Wong, Satoru Miyano
2011 J jnl
Mining Iterative Generators and Representative Rules for Software Specification Discovery.
IEEE Trans. Knowl. Data Eng.
David Lo, Jinyan Li, Limsoon Wong, Siau-Cheng Khoo
2011 J jnl
Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding?
Bioinform.
Qian Liu, Steven C. H. Hoi, Chinh T. T. Su, Zhenhua Li, Chee Keong Kwoh, Limsoon Wong, Jinyan Li
2011 A* conf
Towards exploratory hypothesis testing and analysis.
ICDE
Guimei Liu, Mengling Feng, Yue Wang, Limsoon Wong, See-Kiong Ng, Tzia Liang Mah, Edmund Jon Deoon Lee
2011 J jnl
Using Biological Networks in Protein Function Prediction and Gene Expression Analysis.
Internet Math.
Limsoon Wong
2010 — ed.
2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010, Hong Kong, China, December 18-21, 2010, Proceedings
BIBM
Taesung Park, Stephen Kwok-Wing Tsui, Luonan Chen, Michael K. Ng, Limsoon Wong, Xiaohua Hu
2010 J jnl
Brief Introduction to Some New Results in Gene Expression Analysis, Systems Biology Modeling, Motif Identification, and (noncoding) RNA Analysis.
J. Bioinform. Comput. Biol.
Limsoon Wong
2010 — conf
CAMBer: An approach to support comparative analysis of multiple bacterial strains.
BIBM
Michal Wozniak, Limsoon Wong, Jerzy Tiuryn
2010 — conf
CEO a cloud epistasis computing model in GWAS.
BIBM
Zhengkui Wang, Yue Wang, Kian-Lee Tan, Limsoon Wong, Divyakant Agrawal
2010 J jnl
Consistency, comprehensiveness, and compatibility of pathway databases.
BMC Bioinform.
Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong
2010 J jnl
DA 1.0: parameter estimation of biological pathways using data assimilation approach.
Bioinform.
Chuan Hock Koh, Masao Nagasaki, Ayumu Saito, Limsoon Wong, Satoru Miyano
2010 — conf
Decomposing PPI networks for complex discovery.
BIBM
Guimei Liu, Chern Han Yong, Limsoon Wong, Hon Nian Chua
2010 — conf
Efficiently Finding the Best Parameter for the Emerging Pattern-Based Classifier PCL.
PAKDD (1)
Thanh-Son Ngo, Mengling Feng, Guimei Liu, Limsoon Wong
2010 J jnl
FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium.
BMC Bioinform.
Guimei Liu, Yue Wang, Limsoon Wong
2010 J jnl
Genome-wide analysis of regions similar to promoters of histone genes.
BMC Syst. Biol.
Rajesh Chowdhary, Vladimir B. Bajic, Difeng Dong, Limsoon Wong, Jun S. Liu
2010 — conf
Overcoming drug resistance by co-targeting.
BIBM
Marzieh Ayati, Golnaz Taheri, Shahriar Arab, Limsoon Wong, Changiz Eslahchi
2010 J jnl
Pattern Space Maintenance for Data Updates and Interactive Mining.
Comput. Intell.
Mengling Feng, Guozhu Dong, Jinyan Li, Yap-Peng Tan, Limsoon Wong
2010 J jnl
Protein complex prediction based on k-connected subgraphs in protein interaction network.
BMC Syst. Biol.
Mahnaz Habibi, Changiz Eslahchi, Limsoon Wong
2010 J jnl
Wrestling with Biomedical Research Results: Language Resources and Literature Analysis.
J. Bioinform. Comput. Biol.
Dietrich Rebholz-Schuhmann, Nigel Collier, Jong C. Park, Limsoon Wong
2009 — conf
A Preliminary Study on the Effects of Fear Factors in Disease Propagation.
Complex (2)
Yubo Wang, Jie Hu, Gaoxi Xiao, Limsoon Wong, Stefan Ma, Tee Hiang Cheng
2009 J jnl
Brief Overview of Bioinformatics Activities in Singapore.
PLoS Comput. Biol.
Frank Eisenhaber, Chee Keong Kwoh, See-Kiong Ng, Wing-Kin Sung, Limsoon Wong
2009 J jnl
Complex discovery from weighted PPI networks.
Bioinform.
Guimei Liu, Limsoon Wong, Hon Nian Chua
2009 — conf
Deciphering Drug Action and Escape Pathways: An Example on Nasopharyngeal Carcinoma.
BICoB
Difeng Dong, Chun-Ying Cui, Benjamin Mow, Limsoon Wong
2009 J jnl
Efficient mining of distance-based subspace clusters.
Stat. Anal. Data Min.
Guimei Liu, Kelvin Sim, Jinyan Li, Limsoon Wong
2009 — conf
Key node selection for containing infectious disease spread using particle swarm optimization.
SIS
Xiuju Fu, Sonja Lim, Lipo Wang, Gary Lee, Stefan Ma, Limsoon Wong, Gaoxi Xiao
2009 J jnl
Non-redundant sequential rules - Theory and algorithm.
Inf. Syst.
David Lo, Siau-Cheng Khoo, Limsoon Wong
2009 J jnl
Protein Interactome Analysis for Countering Pathogen Drug Resistance.
J. Comput. Sci. Technol.
Limsoon Wong, Guimei Liu
2009 J jnl
Sirius PSB: a Generic System for Analysis of Biological Sequences.
J. Bioinform. Comput. Biol.
Chuan Hock Koh, Sharene Lin, Gregory Jedd, Limsoon Wong
2008 J jnl
A new concise representation of frequent itemsets using generators and a positive border.
Knowl. Inf. Syst.
Guimei Liu, Jinyan Li, Limsoon Wong
2008 — conf
Effective Pruning Techniques for Mining Quasi-Cliques.
ECML/PKDD (2)
Guimei Liu, Limsoon Wong
2008 J jnl
Efficient mining of frequent XML query patterns with repeating-siblings.
Inf. Softw. Technol.
Liang Huai Yang, Mong-Li Lee, Wynne Hsu, Decai Huang, Limsoon Wong
2008 A* conf
Guilt by association as a search principle.
SIGIR
Limsoon Wong
2008 Misc conf
Manifestation and Exploitation of Invariants in Bioinformatics.
CSR
Limsoon Wong
2008 A conf
Maximal Quasi-Bicliques with Balanced Noise Tolerance: Concepts and Co-clustering Applications.
SDM
Jinyan Li, Kelvin Sim, Guimei Liu, Limsoon Wong
2008 C conf
Negative Generator Border for Effective Pattern Maintenance.
ADMA
Mengling Feng, Jinyan Li, Limsoon Wong, Yap-Peng Tan
2008 B ed.
Research in Computational Molecular Biology, 12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008. Proceedings
RECOMB
Martin Vingron, Limsoon Wong
2008 J jnl
Using Indirect protein-protein Interactions for protein Complex Prediction.
J. Bioinform. Comput. Biol.
Hon Nian Chua, Kang Ning, Wing-Kin Sung, Hon Wai Leong, Limsoon Wong
2007 J jnl
An efficient strategy for extensive integration of diverse biological data for protein function prediction.
Bioinform.
Hon Nian Chua, Wing-Kin Sung, Limsoon Wong
2007 A* conf
CPS-tree: A Compact Partitioned Suffix Tree for Disk-based Indexing on Large Genome Sequences.
ICDE
Swee-Seong Wong, Wing-Kin Sung, Limsoon Wong
2007 A* conf
Distance Based Subspace Clustering with Flexible Dimension Partitioning.
ICDE
Guimei Liu, Jinyan Li, Kelvin Sim, Limsoon Wong
2007 — conf
ECTracker - An Efficient Algorithm for Haplotype Analysis and Classification.
MedInfo
Li Lin, Limsoon Wong, Tze-Yun Leong, Pohsan Lai
2007 J jnl
Enabling more sophisticated gene expression analysis for understanding diseases and optimizing treatments.
SIGKDD Explor.
Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong
2007 B conf
Evolution and Maintenance of Frequent Pattern Space When Transactions Are Removed.
PAKDD
Mengling Feng, Guozhu Dong, Jinyan Li, Yap-Peng Tan, Limsoon Wong
2007 — conf
Manifestation and Exploitation of Invariants in Bioinformatics.
AB
Limsoon Wong
2007 J jnl
Maximal Biclique Subgraphs and Closed Pattern Pairs of the Adjacency Matrix: A One-to-One Correspondence and Mining Algorithms.
IEEE Trans. Knowl. Data Eng.
Jinyan Li, Guimei Liu, Haiquan Li, Limsoon Wong
2007 A* conf
Mining statistically important equivalence classes and delta-discriminative emerging patterns.
KDD
Jinyan Li, Guimei Liu, Limsoon Wong
2007 J jnl
Using indirect protein interactions for the prediction of Gene Ontology functions.
BMC Bioinform.
Hon Nian Chua, Wing-Kin Sung, Limsoon Wong
2006 J jnl
AUTHOR: Text mining and management in biomedicine.
ACM Trans. Asian Lang. Inf. Process.
Jong-Chan Park, Gary Geunbae Lee, Limsoon Wong
2006 Misc conf
Adventures of a Logician-Engineer: A Journey through Logic, Engineering, Medicine, Biology, and Statistics.
SYNASC
Limsoon Wong
2006 J jnl
Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale.
Bioinform.
Haiquan Li, Jinyan Li, Limsoon Wong
2006 J jnl
Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures.
Bioinform.
Rajesh Chowdhary, Sin Lam Tan, R. Ayesha Ali, Brent Boerlage, Limsoon Wong, Vladimir B. Bajic
2006 — conf
Exploiting Indirect Neighbours and Topological Weight to Predict Protein Function from Protein-Protein Interactions.
BioDM
Hon Nian Chua, Wing-Kin Sung, Limsoon Wong
2006 J jnl
Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions.
Bioinform.
Hon Nian Chua, Wing-Kin Sung, Limsoon Wong
2006 — conf
Exploring Essential Attributes for Detecting MicroRNA Precursors from Background Sequences.
VDMB
Yun Zheng, Wynne Hsu, Mong-Li Lee, Limsoon Wong
2006 J jnl
Finding functional promoter motifs by computational methods: a word of caution.
Int. J. Bioinform. Res. Appl.
Rajesh Chowdhary, Limsoon Wong, Vladimir B. Bajic
2006 B conf
Identification of MicroRNA Precursors via SVM.
APBC
Liang Huai Yang, Wynne Hsu, Mong-Li Lee, Limsoon Wong
2006 A* conf
Minimum Description Length Principle: Generators Are Preferable to Closed Patterns.
AAAI
Jinyan Li, Haiquan Li, Limsoon Wong, Jian Pei, Guozhu Dong
2006 — ed.
Pattern Recognition in Bioinformatics, International Workshop, PRIB 2006, Hong Kong, China, August 20, 2006, Proceedings
PRIB
Jagath C. Rajapakse, Limsoon Wong, Raj Acharya
2006 — conf
Pattern Recognition in Bioinformatics: An Introduction.
PRIB
Jagath C. Rajapakse, Limsoon Wong, Raj Acharya
2006 A conf
Positive Borders or Negative Borders: How to Make Lossless Generator Based Representations Concise.
SDM
Guimei Liu, Jinyan Li, Limsoon Wong, Wynne Hsu
2006 B conf
Preface.
APBC
Tao Jiang, Ueng-Cheng Yang, Yi-Ping Phoebe Chen, Limsoon Wong
2006 B ed.
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, Taipei, Taiwan
APBC
Tao Jiang, Ueng-Cheng Yang, Yi-Ping Phoebe Chen, Limsoon Wong
2005 — conf
A Correspondence Between Maximal Complete Bipartite Subgraphs and Closed Patterns.
PKDD
Jinyan Li, Haiquan Li, Donny Soh, Limsoon Wong
2005 J jnl
DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences.
Bioinform.
Huiqing Liu, Hao Han, Jinyan Li, Limsoon Wong
2005 J jnl
Guest Editors' Introduction: Data Mining in Bioinformatics.
IEEE Intell. Syst.
Jinyan Li, Limsoon Wong, Qiang Yang
2005 B conf
LinkageTracker: A Discriminative Pattern Tracking Approach to Linkage Disequilibrium Mapping.
DASFAA
Li Lin, Limsoon Wong, Tze-Yun Leong, Pohsan Lai
2005 B conf
Mining Succinct Systems of Minimal Generators of Formal Concepts.
DASFAA
Guozhu Dong, Chunyu Jiang, Jian Pei, Jinyan Li, Limsoon Wong
2005 B conf
Preface.
APBC
Yi-Ping Phoebe Chen, Limsoon Wong
2005 B ed.
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore
APBC
Yi-Ping Phoebe Chen, Limsoon Wong
2005 A* conf
Relative risk and odds ratio: a data mining perspective.
PODS
Haiquan Li, Jinyan Li, Limsoon Wong, Mengling Feng, Yap-Peng Tan
2005 J jnl
Structural geography of the space of emerging patterns.
Intell. Data Anal.
Jinyan Li, Limsoon Wong
2005 J jnl
Use of extreme patient samples for outcome prediction from gene expression data.
Bioinform.
Huiqing Liu, Jinyan Li, Limsoon Wong
2004 J jnl
Accomplishments and Challenges in Bioinformatics.
IT Prof.
See-Kiong Ng, Limsoon Wong
2004 J jnl
DeEPs: A New Instance-Based Lazy Discovery and Classification System.
Mach. Learn.
Jinyan Li, Guozhu Dong, Kotagiri Ramamohanarao, Limsoon Wong
2004 — conf
Selection of Patient Samples and Genes for Outcome Prediction.
CSB
Huiqing Liu, Jinyan Li, Limsoon Wong
2004 B conf
Use of Built-in Features in the Interpretation of High-dimensional Cancer Diagnosis Data..
APBC
Jinyan Li, Huiqing Liu, Limsoon Wong
2004 J jnl
Using amino acid patterns to accurately predict translation initiation sites.
Silico Biol.
Huiqing Liu, Hao Han, Jinyan Li, Limsoon Wong
2003 A conf
Bioinformatics Adventures in Database Research.
ICDT
Jinyan Li, See-Kiong Ng, Limsoon Wong
2003 J jnl
Data Mining Tools for Biological Sequences.
J. Bioinform. Comput. Biol.
Huiqing Liu, Limsoon Wong
2003 C conf
Discovery of significant rules for classifying cancer diagnosis data.
ECCB
Jinyan Li, Huiqing Liu, See-Kiong Ng, Limsoon Wong
2003 B conf
From Informatics to Bioinformatics.
APBC
Vladimir B. Bajic, Vladimir Brusic, Jinyan Li, See-Kiong Ng, Limsoon Wong
2003 J jnl
Incremental recomputation in local languages.
Inf. Comput.
Guozhu Dong, Leonid Libkin, Limsoon Wong
2003 — conf
Mean-entropy discretized features are effective for classifying high-dimensional biomedical data.
BIOKDD
Jinyan Li, Huiqing Liu, Limsoon Wong
2003 J jnl
Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients.
Bioinform.
Jinyan Li, Huiqing Liu, James R. Downing, Allen Eng-Juh Yeoh, Limsoon Wong
2003 — ch.
The Kleisli Query System as a Backbone for Bioinformatics Data Integration and Analysis.
Bioinformatics
Jing Chen, Su Yun Chung, Limsoon Wong
2003 — conf
Using Rules to Analyse Bio-medical Data: A Comparison between C4.5 and PCL.
WAIM
Jinyan Li, Limsoon Wong
2002 J jnl
Accomplishments and challenges in literature data mining for biology.
Bioinform.
Lynette Hirschman, Jong-Chan Park, Jun'ichi Tsujii, Limsoon Wong, Cathy H. Wu
2002 J jnl
FIMM, a database of functional molecular immunology: update 2002.
Nucleic Acids Res.
Christian Schönbach, Judice L. Y. Koh, Darren R. Flower, Limsoon Wong, Vladimir Brusic
2002 C conf
Fast Filter-and-Refine Algorithms for Subsequence Selection.
IDEAS
Beng Chin Ooi, HweeHwa Pang, Hao Wang, Limsoon Wong, Cui Yu
2002 — conf
Geography of Differences between Two Classes of Data.
PKDD
Jinyan Li, Limsoon Wong
2002 J jnl
Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns .
Bioinform.
Jinyan Li, Limsoon Wong
2002 J jnl
Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns.
Bioinform.
Jinyan Li, Limsoon Wong
2002 Misc conf
Literature Data Mining for Biology - Session Introduction.
Pacific Symposium on Biocomputing
Lynette Hirschman, Jong C. Park, Jun'ichi Tsujii, Cathy H. Wu, Limsoon Wong
2002 J jnl
Lower bounds for invariant queries in logics with counting.
Theor. Comput. Sci.
Leonid Libkin, Limsoon Wong
2002 Misc conf
Mining of Correlated Rules in Genome Sequences.
AMIA
Li Lin, Limsoon Wong, Tze-Yun Leong, Pohsan Lai
2002 A* conf
Solving the Fragmentation Problem of Decision Trees by Discovering Boundary Emerging Patterns.
ICDM
Jinyan Li, Limsoon Wong
2001 J jnl
Logics with aggregate operators.
J. ACM
Lauri Hella, Leonid Libkin, Juha Nurmonen, Limsoon Wong
2001 Misc conf
Natural Language Processing for Biology - Session Introduction.
Pacific Symposium on Biocomputing
Jun'ichi Tsujii, Limsoon Wong
2001 Misc conf
PIES, A Protein Interaction Extraction System.
Pacific Symposium on Biocomputing
Limsoon Wong
2001 J jnl
Reminiscences on Influential Papers.
SIGMOD Rec.
Kenneth A. Ross, James R. Hamilton, Laks V. S. Lakshmanan, Limsoon Wong
2000 J jnl
FIMM, a database of functional molecular immunology.
Nucleic Acids Res.
Christian Schönbach, Judice L. Y. Koh, Xin Sheng, Limsoon Wong, Vladimir Brusic
2000 J jnl
Kleisli, a functional query system.
J. Funct. Program.
Limsoon Wong
2000 C conf
Kleisli, its Exchange Format, Supporting Tools, and an Application in Protein Interaction Extraction.
BIBE
Limsoon Wong
2000 J jnl
Local properties of query languages.
Theor. Comput. Sci.
Guozhu Dong, Leonid Libkin, Limsoon Wong
2000 A conf
The functional guts of the Kleisli query system.
ICFP
Limsoon Wong
1999 B conf
CAEP: Classification by Aggregating Emerging Patterns.
Discovery Science
Guozhu Dong, Xiuzhen Zhang, Limsoon Wong, Jinyan Li
1999 J jnl
Finitely Representable Nested Relations.
Inf. Process. Lett.
Elisa Bertino, Barbara Catania, Limsoon Wong
1999 A* conf
Logics with Aggregate Operators.
LICS
Lauri Hella, Leonid Libkin, Juha Nurmonen, Limsoon Wong
1999 — conf
On the Power of Incremental Evaluation in SQL-Like Languages.
DBPL
Leonid Libkin, Limsoon Wong
1998 J jnl
A Graphical Interface to Genome Multidatabases.
J. Database Manag.
Wang Chiew Tan, Ke Wang, Limsoon Wong
1998 — conf
A Protein Patent Query System Powered By Kleisli.
SIGMOD Conference
Jing Chen, Limsoon Wong, Louxin Zhang
1998 J jnl
Relational Expressive Power of Constraint Query Languages.
J. ACM
Michael Benedikt, Guozhu Dong, Leonid Libkin, Limsoon Wong
1998 A conf
Unary Quantifiers, Transitive Closure, and Relations of Large Degree.
STACS
Leonid Libkin, Limsoon Wong
1997 J jnl
BioKleisli: A Digital Library for Biomedical Researchers.
Int. J. Digit. Libr.
Susan B. Davidson, G. Christian Overton, Val Tannen, Limsoon Wong
1997 — conf
Incremental Recomputation of Recursive Queries with Nested Sets and Aggregate Functions.
DBPL
Leonid Libkin, Limsoon Wong
1997 A conf
Local Properties of Query Languages.
ICDT
Guozhu Dong, Leonid Libkin, Limsoon Wong
1997 — conf
On the Power of Aggregation in Relational Query Languages.
DBPL
Leonid Libkin, Limsoon Wong
1997 J jnl
Query Languages for Bags and Aggregate Functions.
J. Comput. Syst. Sci.
Leonid Libkin, Limsoon Wong
1997 J jnl
Some Relationships between the FOIES and S1 Arity Hierarchies.
Bull. EATCS
Guozhu Dong, Limsoon Wong
1996 — conf
A Query Language for Multidimensional Arrays: Design, Implementation, and Optimization Techniques.
SIGMOD Conference
Leonid Libkin, Rona Machlin, Limsoon Wong
1996 J jnl
Normal Forms and Conservative Extension Properties for Query Languages over Collection Types.
J. Comput. Syst. Sci.
Limsoon Wong
1996 — conf
QUICK: Graphical User Interface to Multiple Databases.
DEXA Workshop
Wang Chiew Tan, Ke Wang, Limsoon Wong
1996 J jnl
Query languages for bags: expressive power and complexity.
SIGACT News
Stéphane Grumbach, Leonid Libkin, Tova Milo, Limsoon Wong
1996 A* conf
Relational Expressive Power of Constraint Query Languages.
PODS
Michael Benedikt, Guozhu Dong, Leonid Libkin, Limsoon Wong
1996 J jnl
Semantic Representations and Query Labguages for Or-Sets.
J. Comput. Syst. Sci.
Leonid Libkin, Limsoon Wong
1995 A* conf
A Data Transformation System for Biological Data Sources.
VLDB
Peter Buneman, Susan B. Davidson, Kyle Hart, G. Christian Overton, Limsoon Wong
1995 J jnl
An Introduction to Remy's Fast Polymorphic Record Projection.
SIGMOD Rec.
Limsoon Wong
1995 — conf
On Impossibility of Decremental Recomputation of Recursive Queries in Relational Calculus and SQL.
DBPL
Guozhu Dong, Leonid Libkin, Limsoon Wong
1995 J jnl
On Representation and Querying Incomplete Information in Databases with Bags.
Inf. Process. Lett.
Leonid Libkin, Limsoon Wong
1995 A conf
On Two Forms of Structural Recursion.
ICDT
Dan Suciu, Limsoon Wong
1995 J jnl
Polymorphic Queries Across Sets, Bags, and Lists.
ACM SIGPLAN Notices
Limsoon Wong
1995 J jnl
Principles of Programming with Complex Objects and Collection Types.
Theor. Comput. Sci.
Peter Buneman, Shamim A. Naqvi, Val Tannen, Limsoon Wong
1994 J jnl
Comprehension Syntax.
SIGMOD Rec.
Peter Buneman, Leonid Libkin, Dan Suciu, Val Tannen, Limsoon Wong
1994 J jnl
Conservativity of Nested Relational Calculi with Internal Generic Functions.
Inf. Process. Lett.
Leonid Libkin, Limsoon Wong
1994 A* conf
New Techniques for Studying Set Languages, Bag Languages and Aggregate Functions.
PODS
Leonid Libkin, Limsoon Wong
1994 — —
Querying Nested Collections.
Limsoon Wong
1993 — conf
Aggregate Functions, Conservative Extensions, and Linear Orders.
DBPL
Leonid Libkin, Limsoon Wong
1993 B conf
Heterogeneous Query Optimization Using Maximal Sub-Queries.
DASFAA
Anne H. H. Ngu, Ling-Ling Yan, Limsoon Wong
1993 A* conf
Normal Forms and Conservative Properties for Query Languages over Collection Types.
PODS
Limsoon Wong
1993 B conf
PINOL: A Persistent Inferential Object Oriented Language for Databases.
DASFAA
Anne H. H. Ngu, Limsoon Wong
1993 A* conf
Semantic Representations and Query Languages for Or-sets.
PODS
Leonid Libkin, Limsoon Wong
1993 — conf
Some Properties of Query Languages for Bags.
DBPL
Leonid Libkin, Limsoon Wong
1992 A conf
Naturally Embedded Query Languages.
ICDT
Val Tannen, Peter Buneman, Limsoon Wong
1991 — conf
On Canonical and Non-canonical Classifications.
DOOD
Anne H. H. Ngu, Limsoon Wong, Surjatini Widjojo
1990 J jnl
Treating Failure As Value.
ACM SIGPLAN Notices
Limsoon Wong, Beng Chin Ooi
1990 J jnl
Treating failure as state.
ACM SIGPLAN Notices
Limsoon Wong, Beng Chin Ooi
1989 — conf
Inference Rules in Object Oriented Programminh Systems.
DOOD
Limsoon Wong