Liliana Florea

17 papers B 1Journal 13Unranked 3
YearRankTypeTitle / Venue / Authors
2021 J jnl
Jutils: a visualization toolkit for differential alternative splicing events.
Bioinform.
Guangyu Yang, Leslie Cope, Zitong He, Liliana Florea
2018 J jnl
Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.
Bioinform.
Bahman Afsari, Theresa Guo, Michael Considine, Liliana Florea, Luciane T. Kagohara, Genevieve L. Stein-O'Brien, Dylan Kelley, Emily Flam, Kristina D. Zambo, Patrick K. Ha, Donald Geman, Michael F. Ochs, Joseph A. Califano, Daria A. Gaykalova, Alexander V. Favorov, Elana J. Fertig
2016 — conf
JULiP: An efficient model for accurate intron selection from multiple RNA-seq samples.
ICCABS
Guangyu Yang, Liliana Florea
2016 — conf
JULiP: An efficient model for accurate intron selection from multiple RNA-seq samples.
ICCABS
Guangyu Yang, Liliana Florea
2013 J jnl
CLASS: constrained transcript assembly of RNA-seq reads.
BMC Bioinform.
Li Song, Liliana Florea
2013 J jnl
Genome-Guided Transcriptome Assembly in the Age of Next-Generation Sequencing.
IEEE ACM Trans. Comput. Biol. Bioinform.
Liliana Florea, Steven L. Salzberg
2013 J jnl
Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues.
F1000Research
Liliana Florea, Li Song, Steven L. Salzberg
2011 J jnl
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing.
Bioinform.
Brian Walenz, Liliana Florea
2010 J jnl
Spaced Seeds for Cross-species CDNA-to-genome Sequence Alignment.
Commun. Inf. Syst.
Liliana Florea, Ingrid Mihai, Leming Zhou
2008 J jnl
Effective cluster-based seed design for cross-species sequence comparisons.
Bioinform.
Leming Zhou, Ingrid Mihai, Liliana Florea
2008 J jnl
Universal seeds for cDNA-to-genome comparison.
BMC Bioinform.
Leming Zhou, Jonathan Stanton, Liliana Florea
2007 J jnl
Designing Sensitive and Specific Spaced Seeds for Cross-Species mRNA-to-Genome Alignment.
J. Comput. Biol.
Leming Zhou, Liliana Florea
2006 J jnl
Bioinformatics of alternative splicing and its regulation.
Briefings Bioinform.
Liliana Florea
2005 J jnl
Finding Anchors for Genomic Sequence Comparison.
J. Comput. Biol.
Ross A. Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail
2004 B conf
Finding anchors for genomic sequence comparison.
RECOMB
Ross Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail
2003 J jnl
EnteriX 2003: visualization tools for genome alignments of Enterobacteriaceae.
Nucleic Acids Res.
Liliana Florea, Michael McClelland, Cathy Riemer, Scott Schwartz, Webb Miller
2003 — conf
Epitope Prediction Algorithms for Peptide based Vaccine Design.
CSB
Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail