Lila Kari - RankMe

251 papers A* 3B 17C 16Journal 172Unranked 36

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Bridging Chaos Game Representations and CoRR Haoze He, Lila Kari, Pablo Millan Arias
2025	—	`conf`	Bridging Chaos Game Representations and k-mer Frequencies of DNA Sequences. UCNC Haoze He, Lila Kari, Pablo Millan Arias
2025	J	`jnl`	Enhancing DNA Foundation Models to Address Masking Inefficiencies. CoRR Monireh Safari, Pablo Millan Arias, Scott C. Lowe, Lila Kari, Angel X. Chang, Graham W. Taylor
2025	J	`jnl`	Tribute to Arto Salomaa. Bull. EATCS Juhani Karhumäki, Jarkko Kari, Lila Kari, Hermann Maurer, Ion Petre, Grzegorz Rozenberg
2024	A*	`conf`	BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity. NeurIPS Zahra Gharaee, Scott C. Lowe, ZeMing Gong, Pablo Millan Arias, Nicholas Pellegrino, Austin T. Wang, Joakim Bruslund Haurum, Iuliia Zarubiieva, Lila Kari, Dirk Steinke, Graham W. Taylor, Paul W. Fieguth, Angel X. Chang
2024	J	`jnl`	BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity. CoRR Zahra Gharaee, Scott C. Lowe, ZeMing Gong, Pablo Millan Arias, Nicholas Pellegrino, Austin T. Wang, Joakim Bruslund Haurum, Iuliia Zarubiieva, Lila Kari, Dirk Steinke, Graham W. Taylor, Paul W. Fieguth, Angel X. Chang
2024	J	`jnl`	CGRclust: Chaos Game Representation for Twin Contrastive Clustering of Unlabelled DNA Sequences. CoRR Fatemeh Alipour, Kathleen A. Hill, Lila Kari
2023	J	`jnl`	BarcodeBERT: Transformers for Biodiversity Analysis. CoRR Pablo Millan Arias, Niousha Sadjadi, Monireh Safari, ZeMing Gong, Austin T. Wang, Scott C. Lowe, Joakim Bruslund Haurum, Iuliia Zarubiieva, Dirk Steinke, Lila Kari, Angel X. Chang, Graham W. Taylor
2023	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2022	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2022	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2022	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2022	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2022	J	`jnl`	Primitivity of Atom Watson-Crick Fibonacci Words. J. Autom. Lang. Comb. Lila Kari, Kalpana Mahalingam, Palak Pandoh, Zihao Wang
2022	J	`jnl`	SomaticSiMu: a mutational signature simulator. Bioinform. David Chen, Gurjit S. Randhawa, Maximillian P. M. Soltysiak, Camila P. E. de Souza, Lila Kari, Shiva M. Singh, Kathleen A. Hill
2022	—	`conf`	Watson-Crick Powers of a Word. CAI Lila Kari, Kalpana Mahalingam
2021	J	`jnl`	A fascinating rainbow of computation - Honoring Gheorghe Păun on the occasion of his 70th birthday. Theor. Comput. Sci. Lila Kari, Ion Petre, Grzegorz Rozenberg, Arto Salomaa
2021	J	`jnl`	Building bridges - Honoring Nataša Jonoska on the occasion of her 60th birthday. Theor. Comput. Sci. Paola Bonizzoni, Lila Kari, Ion Petre, Grzegorz Rozenberg
2021	J	`jnl`	Conjugate word blending: formal model and experimental implementation by XPCR. Nat. Comput. Francesco Bellamoli, Giuditta Franco, Lila Kari, Silvia Lampis, Timothy Ng, Zihao Wang
2021	J	`jnl`	Descriptional Complexity of Semi-Simple Splicing Systems. Int. J. Found. Comput. Sci. Lila Kari, Timothy Ng
2021	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2021	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2021	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2021	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2021	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2021	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2021	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2021	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2021	J	`jnl`	Involutive Fibonacci Words. J. Autom. Lang. Comb. Lila Kari, Manasi S. Kulkarni, Kalpana Mahalingam, Zihao Wang
2020	C	`conf`	Descriptional Complexity of Semi-simple Splicing Systems. DLT Lila Kari, Timothy Ng
2020	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2020	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2020	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2020	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2020	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2020	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2020	J	`jnl`	MLDSP-GUI: an alignment-free standalone tool with an interactive graphical user interface for DNA sequence comparison and analysis. Bioinform. Gurjit S. Randhawa, Kathleen A. Hill, Lila Kari
2020	J	`jnl`	Preface. Theor. Comput. Sci. Giorgio Ausiello, Lila Kari, Grzegorz Rozenberg, Donald Sannella, Paul G. Spirakis, Pierre-Louis Curien
2020	J	`jnl`	State Complexity of Overlap Assembly. Int. J. Found. Comput. Sci. Janusz A. Brzozowski, Lila Kari, Bai Li, Marek Szykula
2020	J	`jnl`	Word Blending in Formal Languages. Fundam. Informaticae Srujan Kumar Enaganti, Lila Kari, Timothy Ng, Zihao Wang
2019	J	`jnl`	Descriptional Complexity of Semi-Simple Splicing Systems. CoRR Lila Kari, Timothy Ng
2019	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2019	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2019	J	`jnl`	Preface. Theor. Comput. Sci. Giorgio Ausiello, Lila Kari, Grzegorz Rozenberg, Donald Sannella, Paul G. Spirakis, Pierre-Louis Curien
2019	J	`jnl`	Simplifying the role of signals in tile self-assembly. Nat. Comput. Lila Kari, Amirhossein Simjour
2019	C	`conf`	State Complexity of Pseudocatenation. LATA Lila Kari, Timothy Ng
2019	—	`conf`	State Complexity of Simple Splicing. DCFS Lila Kari, Timothy Ng
2018	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2018	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2018	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2018	J	`jnl`	Efficient Algorithms for Computing the Inner Edit Distance of a Regular Language via Transducers. Algorithms Lila Kari, Stavros Konstantinidis, Steffen Kopecki, Meng Yang
2018	J	`jnl`	Relative Watson-Crick Primitivity of Words. J. Autom. Lang. Comb. Lila Kari, Manasi S. Kulkarni, Kalpana Mahalingam
2018	C	`conf`	State Complexity of Overlap Assembly. CIAA Janusz A. Brzozowski, Lila Kari, Bai Li, Marek Szykula
2018	J	`jnl`	Transducer descriptions of DNA code properties and undecidability of antimorphic problems. Inf. Comput. Lila Kari, Stavros Konstantinidis, Steffen Kopecki
2018	—	`conf`	Word Blending in Formal Languages: The Brangelina Effect. UCNC Srujan Kumar Enaganti, Lila Kari, Timothy Ng, Zihao Wang
2017	J	`jnl`	Binary Pattern Tile Set Synthesis Is NP-Hard. Algorithmica Lila Kari, Steffen Kopecki, Pierre-Étienne Meunier, Matthew J. Patitz, Shinnosuke Seki
2017	J	`jnl`	Deciding whether a regular language is generated by a splicing system. J. Comput. Syst. Sci. Lila Kari, Steffen Kopecki
2017	J	`jnl`	Disjunctivity and other properties of sets of pseudo-bordered words. Acta Informatica Lila Kari, Manasi S. Kulkarni
2017	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2017	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2017	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2017	J	`jnl`	Further remarks on DNA overlap assembly. Inf. Comput. Srujan Kumar Enaganti, Oscar H. Ibarra, Lila Kari, Steffen Kopecki
2017	J	`jnl`	MoDMaps3D: an interactive webtool for the quantification and 3D visualization of interrelationships in a dataset of DNA sequences. Bioinform. Rallis Karamichalis, Lila Kari
2017	J	`jnl`	On the overlap assembly of strings and languages. Nat. Comput. Srujan Kumar Enaganti, Oscar H. Ibarra, Lila Kari, Steffen Kopecki
2017	J	`jnl`	Smart Tile Self-Assembly and Replication. Fundam. Informaticae Lila Kari, Amirhossein Simjour
2017	J	`jnl`	State Complexity of Overlap Assembly. CoRR Janusz A. Brzozowski, Lila Kari, Bai Li, Marek Szykula
2016	J	`jnl`	Additive methods for genomic signatures. BMC Bioinform. Rallis Karamichalis, Lila Kari, Stavros Konstantinidis, Steffen Kopecki, Stephen Solis-Reyes
2016	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2016	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2016	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2016	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2016	J	`jnl`	Preface. Nat. Comput. Oscar H. Ibarra, Lila Kari, Steffen Kopecki
2015	J	`jnl`	3-color bounded patterned self-assembly. Nat. Comput. Lila Kari, Steffen Kopecki, Shinnosuke Seki
2015	J	`jnl`	A Formal Language Model of DNA Polymerase Enzymatic Activity. Fundam. Informaticae Srujan Kumar Enaganti, Lila Kari, Steffen Kopecki
2015	J	`jnl`	An investigation into inter- and intragenomic variations of graphic genomic signatures. BMC Bioinform. Rallis Karamichalis, Lila Kari, Stavros Konstantinidis, Steffen Kopecki
2015	—	`conf`	Binary Pattern Tile Set Synthesis Is NP-hard. ICALP (1) Lila Kari, Steffen Kopecki, Pierre-Étienne Meunier, Matthew J. Patitz, Shinnosuke Seki
2015	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2015	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2015	J	`jnl`	Editorial. Theor. Comput. Sci. Lila Kari
2015	J	`jnl`	Methods for Relativizing Properties of Codes. Acta Cybern. Helmut Jürgensen, Lila Kari, Steffen Kopecki
2015	J	`jnl`	TCS in the 21st century. Theor. Comput. Sci. Giorgio Ausiello, Lila Kari, Grzegorz Rozenberg, Donald Sannella
2015	—	`conf`	Transducer Descriptions of DNA Code Properties and Undecidability of Antimorphic Problems. DCFS Lila Kari, Stavros Konstantinidis, Steffen Kopecki
2015	J	`jnl`	Transducer Descriptions of DNA Code Properties and Undecidability of Antimorphic Problems. CoRR Lila Kari, Stavros Konstantinidis, Steffen Kopecki
2014	J	`jnl`	An efficient algorithm for computing the edit distance of a regular language via input-altering transducers. CoRR Lila Kari, Stavros Konstantinidis, Steffen Kopecki, Meng Yang
2014	J	`jnl`	Binary pattern tile set synthesis is NP-hard. CoRR Lila Kari, Steffen Kopecki, Pierre-Étienne Meunier, Matthew J. Patitz, Shinnosuke Seki
2014	J	`jnl`	Generating the Pseudo-Powers of a Word. J. Autom. Lang. Comb. Lila Kari, Manasi S. Kulkarni
2014	J	`jnl`	Hypergraph Automata: a Theoretical Model for patterned Self-assembly. Int. J. Found. Comput. Sci. Lila Kari, Steffen Kopecki, Amirhossein Simjour
2014	J	`jnl`	On the maximality of languages with combined types of code properties. Theor. Comput. Sci. Lila Kari, Stavros Konstantinidis, Steffen Kopecki
2014	—	`conf`	Pseudo-Identities and Bordered Words. Discrete Mathematics and Computer Science Lila Kari, Manasi S. Kulkarni
2014	—	`ed.`	Unconventional Computation and Natural Computation - 13th International Conference, UCNC 2014, London, ON, Canada, July 14-18, 2014, Proceedings UCNC Oscar H. Ibarra, Lila Kari, Steffen Kopecki
2013	B	`conf`	3-Color Bounded Patterned Self-assembly - (Extended Abstract). DNA Lila Kari, Steffen Kopecki, Shinnosuke Seki
2013	J	`jnl`	3-color Bounded Patterned Self-assembly. CoRR Lila Kari, Steffen Kopecki, Shinnosuke Seki
2013	J	`jnl`	Hypergraph Automata: A Theoretical Model for Patterned Self-assembly CoRR Lila Kari, Steffen Kopecki, Amirhossein Simjour
2013	—	`conf`	Hypergraph Automata: A Theoretical Model for Patterned Self-assembly. UCNC Lila Kari, Steffen Kopecki, Amirhossein Simjour
2013	J	`jnl`	Map of Life: Measuring and Visualizing Species' Relatedness with "Molecular Distance Maps". CoRR Lila Kari, Kathleen A. Hill, Abu Sadat Sayem, Nathaniel Bryans, Katelyn Davis, Nikesh S. Dattani
2013	C	`conf`	Negative Glues and Non-determinism in Nanocomputations by Self-assembly. CiE Lila Kari
2013	J	`jnl`	Negative Interactions in Irreversible Self-assembly. Algorithmica David Doty, Lila Kari, Benoît Masson
2013	J	`jnl`	State complexity of star of union and square of union on k regular languages. Theor. Comput. Sci. Yuan Gao, Lila Kari
2013	J	`jnl`	The Power of Nondeterminism in Self-Assembly. Theory Comput. Nathaniel Bryans, Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki
2012	—	`ch.`	DNA Computing - Foundations and Implications. Handbook of Natural Computing Lila Kari, Shinnosuke Seki, Petr Sosík
2012	J	`jnl`	De Bruijn Sequences Revisited. Int. J. Found. Comput. Sci. Lila Kari, Zhi Xu
2012	B	`conf`	Deciding Whether a Regular Language Is Generated by a Splicing System. DNA Lila Kari, Steffen Kopecki
2012	B	`conf`	Iterated Hairpin Completions of Non-crossing Words. SOFSEM Lila Kari, Steffen Kopecki, Shinnosuke Seki
2012	J	`jnl`	One-reversal counter machines and multihead automata: Revisited. Theor. Comput. Sci. Ehsan Chiniforooshan, Mark Daley, Oscar H. Ibarra, Lila Kari, Shinnosuke Seki
2012	J	`jnl`	Pseudopower Avoidance. Fundam. Informaticae Ehsan Chiniforooshan, Lila Kari, Zhi Xu
2012	J	`jnl`	Relativized codes. Theor. Comput. Sci. Mark Daley, Helmut Jürgensen, Lila Kari, Kalpana Mahalingam
2012	—	`conf`	State Complexity of Star and Square of Union of k Regular Languages. DCFS Yuan Gao, Lila Kari
2012	J	`jnl`	State Complexity of Two Combined Operations: Catenation-Star and Catenation-Reversal. Int. J. Found. Comput. Sci. Bo Cui, Yuan Gao, Lila Kari, Sheng Yu
2012	J	`jnl`	State complexity of combined operations with two basic operations. Theor. Comput. Sci. Bo Cui, Yuan Gao, Lila Kari, Sheng Yu
2012	J	`jnl`	State complexity of union and intersection of square and reversal on k regular languages. Theor. Comput. Sci. Yuan Gao, Lila Kari, Sheng Yu
2012	J	`jnl`	State complexity of union and intersection of star on k regular languages. Theor. Comput. Sci. Yuan Gao, Lila Kari, Sheng Yu
2012	—	`conf`	Triangular and Hexagonal Tile Self-assembly Systems. Computation, Physics and Beyond Lila Kari, Shinnosuke Seki, Zhi Xu
2011	J	`jnl`	An extension of the Lyndon-Schützenberger result to pseudoperiodic words. Inf. Comput. Elena Czeizler, Eugen Czeizler, Lila Kari, Shinnosuke Seki
2011	J	`jnl`	Block insertion and deletion on trajectories. Theor. Comput. Sci. Bo Cui, Lila Kari, Shinnosuke Seki
2011	J	`jnl`	Combinatorial and Algorithmic Aspects of Sequence Processing (Dagstuhl Seminar 11081). Dagstuhl Reports Maxime Crochemore, Lila Kari, Mehryar Mohri, Dirk Nowotka
2011	—	`conf`	De Bruijn Sequences Revisited. AFL Lila Kari, Zhi Xu
2011	J	`jnl`	Deciding if a Regular Language is Generated by a Splicing System CoRR Lila Kari, Steffen Kopecki
2011	J	`jnl`	Iterated Hairpin Completions of Non-crossing Words CoRR Lila Kari, Steffen Kopecki, Shinnosuke Seki
2011	J	`jnl`	K-Comma Codes and Their Generalizations. Fundam. Informaticae Bo Cui, Lila Kari, Shinnosuke Seki
2011	J	`jnl`	On the Regularity of Iterated Hairpin Completion of a Single Word. Fundam. Informaticae Lila Kari, Shinnosuke Seki, Steffen Kopecki
2011	J	`jnl`	On the regularity of iterated hairpin completion of a single word CoRR Lila Kari, Steffen Kopecki, Shinnosuke Seki
2011	B	`conf`	One-Reversal Counter Machines and Multihead Automata: Revisited. SOFSEM Ehsan Chiniforooshan, Mark Daley, Oscar H. Ibarra, Lila Kari, Shinnosuke Seki
2011	J	`jnl`	Orthogonal Shuffle on Trajectories. Int. J. Found. Comput. Sci. Mark Daley, Lila Kari, Shinnosuke Seki, Petr Sosík
2011	J	`jnl`	Polyominoes simulating arbitrary-neighborhood zippers and tilings. Theor. Comput. Sci. Lila Kari, Benoît Masson
2011	J	`jnl`	Properties of Pseudo-Primitive Words and their Applications. Int. J. Found. Comput. Sci. Lila Kari, Benoît Masson, Shinnosuke Seki
2011	J	`jnl`	Schema for Parallel Insertion and Deletion: Revisited. Int. J. Found. Comput. Sci. Lila Kari, Shinnosuke Seki
2011	J	`jnl`	State Complexity of Two Combined Operations: Catenation-Union and Catenation-Intersection. Int. J. Found. Comput. Sci. Bo Cui, Yuan Gao, Lila Kari, Sheng Yu
2011	A*	`conf`	The Power of Nondeterminism in Self-Assembly. SODA Nathaniel Bryans, Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki
2011	J	`jnl`	Towards a neighborhood simplification of tile systems: From Moore to quasi-linear dependencies. Nat. Comput. Eugen Czeizler, Lila Kari
2010	J	`jnl`	An Improved Bound for an Extension of Fine and Wilf's Theorem and Its Optimality. Fundam. Informaticae Lila Kari, Shinnosuke Seki
2010	—	`conf`	Ciliate Gene Unscrambling with Fewer Templates DCFS Lila Kari, Afroza Rahman
2010	C	`conf`	DNA Computing and Its Implications for Theoretical Computer Science. Developments in Language Theory Lila Kari
2010	J	`jnl`	Negative Interactions in Irreversible Self-Assembly CoRR David Doty, Lila Kari, Benoît Masson
2010	B	`conf`	Negative Interactions in Irreversible Self-assembly. DNA David Doty, Lila Kari, Benoît Masson
2010	J	`jnl`	On a special class of primitive words. Theor. Comput. Sci. Elena Czeizler, Lila Kari, Shinnosuke Seki
2010	J	`jnl`	Polyominoes Simulating Arbitrary-Neighborhood Zippers and Tilings CoRR Lila Kari, Benoît Masson
2010	J	`jnl`	Properties of Pseudo-Primitive Words and their Applications CoRR Lila Kari, Benoît Masson, Shinnosuke Seki
2010	C	`conf`	Pseudo-power Avoidance. Developments in Language Theory Ehsan Chiniforooshan, Lila Kari, Zhi Xu
2010	B	`conf`	Scalable, Time-Responsive, Digital, Energy-Efficient Molecular Circuits Using DNA Strand Displacement. DNA Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki
2010	J	`jnl`	Scalable, Time-Responsive, Digital, Energy-Efficient Molecular Circuits using DNA Strand Displacement CoRR Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki
2010	C	`conf`	Schema for Parallel Insertion and Deletion. Developments in Language Theory Lila Kari, Shinnosuke Seki
2010	—	`conf`	State Complexity of Catenation Combined with Star and Reversal DCFS Bo Cui, Yuan Gao, Lila Kari, Sheng Yu
2010	C	`conf`	State Complexity of Catenation Combined with Union and Intersection. CIAA Bo Cui, Yuan Gao, Lila Kari, Sheng Yu
2010	J	`jnl`	State Complexity of Two Combined Operations: Reversal-Catenation and Star-Catenation CoRR Bo Cui, Yuan Gao, Lila Kari, Sheng Yu
2010	J	`jnl`	The Power of Nondeterminism in Self-Assembly CoRR Nathaniel Bryans, Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki
2010	J	`jnl`	The Power of Nondeterminism in Self-Assembly. Electron. Colloquium Comput. Complex. Nathaniel Bryans, Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki
2010	J	`jnl`	Triangular Self-Assembly CoRR Lila Kari, Shinnosuke Seki, Zhi Xu
2010	B	`conf`	Triangular Tile Self-assembly Systems. DNA Lila Kari, Shinnosuke Seki, Zhi Xu
2010	J	`jnl`	Watson-Crick palindromes in DNA computing. Nat. Comput. Lila Kari, Kalpana Mahalingam
2009	C	`conf`	An Extension of the Lyndon Schützenberger Result to Pseudoperiodic Words. Developments in Language Theory Elena Czeizler, Eugen Czeizler, Lila Kari, Shinnosuke Seki
2009	—	`conf`	Duplication in DNA Sequences. Algorithmic Bioprocesses Masami Ito, Lila Kari, Zachary Kincaid, Shinnosuke Seki
2009	J	`jnl`	Geometrical tile design for complex neighborhoods. Frontiers Comput. Neurosci. Eugen Czeizler, Lila Kari
2009	J	`jnl`	On pseudoknot-bordered words and their properties. J. Comput. Syst. Sci. Lila Kari, Shinnosuke Seki
2009	—	`conf`	On the Reversibility of Parallel Insertion, and Its Relation to Comma Codes. CAI Bo Cui, Lila Kari, Shinnosuke Seki
2009	J	`jnl`	On the descriptional complexity of Watson-Crick automata. Theor. Comput. Sci. Elena Czeizler, Eugen Czeizler, Lila Kari, Kai Salomaa
2009	J	`jnl`	Pseudo-Power Avoidance CoRR Ehsan Chiniforooshan, Lila Kari, Zhi Xu
2009	J	`jnl`	The Undecidability of the Infinite Ribbon Problem: Implications for Computing by Self-Assembly. SIAM J. Comput. Leonard M. Adleman, Jarkko Kari, Lila Kari, Dustin Reishus, Petr Sosík
2009	J	`jnl`	Twin-roots of words and their properties. Theor. Comput. Sci. Lila Kari, Kalpana Mahalingam, Shinnosuke Seki
2008	C	`conf`	Duplication in DNA Sequences. Developments in Language Theory Masami Ito, Lila Kari, Zachary Kincaid, Shinnosuke Seki
2008	J	`jnl`	Involution Solid and Join codes. Fundam. Informaticae Natasa Jonoska, Lila Kari, Kalpana Mahalingam
2008	B	`conf`	On a Special Class of Primitive Words. MFCS Elena Czeizler, Lila Kari, Shinnosuke Seki
2008	J	`jnl`	On the weight of universal insertion grammars. Theor. Comput. Sci. Lila Kari, Petr Sosík
2008	J	`jnl`	The many facets of natural computing. Commun. ACM Lila Kari, Grzegorz Rozenberg
2008	J	`jnl`	Watson-Crick Bordered Words and their Syntactic Monoid. Int. J. Found. Comput. Sci. Lila Kari, Kalpana Mahalingam
2008	—	`conf`	Watson-Crick automata: determinism and state complexity. DCFS Elena Czeizler, Eugen Czeizler, Lila Kari, Kai Salomaa
2007	J	`jnl`	Involutively Bordered Words. Int. J. Found. Comput. Sci. Lila Kari, Kalpana Mahalingam
2007	C	`conf`	Nanocomputing by Self-assembly. UC Lila Kari
2007	J	`jnl`	The syntactic monoid of hairpin-free languages. Acta Informatica Lila Kari, Kalpana Mahalingam, Gabriel Thierrin
2007	—	`conf`	Towards the Sequence Design Preventing Pseudoknot Formation. IWNC Lila Kari, Shinnosuke Seki
2007	B	`conf`	Watson-Crick Conjugate and Commutative Words. DNA Lila Kari, Kalpana Mahalingam
2006	J	`jnl`	A Formal Language Analysis of DNA Hairpin Structures. Fundam. Informaticae Lila Kari, Elena Losseva, Stavros Konstantinidis, Petr Sosík, Gabriel Thierrin
2006	J	`jnl`	Block Substitutions and Their Properties. Fundam. Informaticae Lila Kari, Elena Losseva
2006	B	`conf`	DNA Codes and Their Properties. DNA Lila Kari, Kalpana Mahalingam
2006	—	`conf`	Involution Solid Codes. Nanotechnology: Science and Computation Lila Kari, Kalpana Mahalingam
2006	C	`conf`	Involution Solid and Join Codes. Developments in Language Theory Natasa Jonoska, Lila Kari, Kalpana Mahalingam
2005	J	`jnl`	Aspects of shuffle and deletion on trajectories. Theor. Comput. Sci. Lila Kari, Petr Sosík
2005	J	`jnl`	Bond-free languages: formalizations, maximality and construction methods. Int. J. Found. Comput. Sci. Lila Kari, Stavros Konstantinidis, Petr Sosík
2005	J	`jnl`	Computationally universal P systems without priorities: two catalysts are sufficient. Theor. Comput. Sci. Rudolf Freund, Lila Kari, Marion Oswald, Petr Sosík
2005	B	`conf`	Hairpin Structures in DNA Words. DNA Lila Kari, Stavros Konstantinidis, Elena Losseva, Petr Sosík, Gabriel Thierrin
2005	J	`jnl`	Language equations, maximality and error-detection. J. Comput. Syst. Sci. Lila Kari, Stavros Konstantinidis
2005	C	`conf`	On Hairpin-Free Words and Languages. Developments in Language Theory Lila Kari, Stavros Konstantinidis, Petr Sosík, Gabriel Thierrin
2005	—	`conf`	On Weight of Universal Insertion Grammars. DCFS Lila Kari, Petr Sosík
2005	J	`jnl`	On properties of bond-free DNA languages. Theor. Comput. Sci. Lila Kari, Stavros Konstantinidis, Petr Sosík
2005	J	`jnl`	Operations on trajectories with applications to coding and bioinformatics. Int. J. Found. Comput. Sci. Lila Kari, Stavros Konstantinidis, Petr Sosík
2005	J	`jnl`	Results on Transforming NFA into DFCA. Fundam. Informaticae Cezar Câmpeanu, Lila Kari, Andrei Paun
2005	—	`conf`	Who Counts Your Votes? EEE Halina Kaminski, Lila Kari, Mark Perry
2004	—	`ch.`	Biocomputation in Ciliates. Cellular Computing Lila Kari, Laura F. Landweber
2004	B	`conf`	Bond-Free Languages: Formalizations, Maximality and Construction Methods. DNA Lila Kari, Stavros Konstantinidis, Petr Sosík
2004	J	`jnl`	Descriptional Complexity of Error/Edit Systems. J. Autom. Lang. Comb. Lila Kari, Stavros Konstantinidis
2004	J	`jnl`	Families of languages defined by ciliate bio-operations. Theor. Comput. Sci. Mark Daley, Lila Kari, Ian McQuillan
2004	J	`jnl`	On Language Equations with Deletion. Bull. EATCS Lila Kari, Petr Sosík
2004	—	`conf`	On the Universality of P Systems with Minimal Symport/Antiport Rules. Aspects of Molecular Computing Lila Kari, Carlos Martín-Vide, Andrei Paun
2004	B	`conf`	Preventing Undesirable Bonds Between DNA Codewords. DNA Lila Kari, Stavros Konstantinidis, Petr Sosík
2004	—	`conf`	Substitution on Trajectories. Theory Is Forever Lila Kari, Stavros Konstantinidis, Petr Sosík
2004	C	`conf`	Substitutions, Trajectories and Noisy Channels. CIAA Lila Kari, Stavros Konstantinidis, Petr Sosík
2003	J	`jnl`	Closure and decidability properties of some language classes with respect to ciliate bio-operations. Theor. Comput. Sci. Mark Daley, Oscar H. Ibarra, Lila Kari
2003	J	`jnl`	Coding properties of DNA languages. Theor. Comput. Sci. Salah Hussini, Lila Kari, Stavros Konstantinidis
2003	J	`jnl`	Sticky-free and overhang-free DNA languages. Acta Informatica Lila Kari, Stavros Konstantinidis, Elena Losseva, Geoff Wozniak
2003	J	`jnl`	The LD and DLAD Bio-Operations on Formal Languages. J. Autom. Lang. Comb. Mark Daley, Oscar H. Ibarra, Lila Kari, Ian McQuillan, Koji Nakano
2002	—	`conf`	Codes, Involutions, and DNA Encodings. Formal and Natural Computing Lila Kari, Rob Kitto, Gabriel Thierrin
2002	—	`conf`	Descriptional Complexity of Error/Edit Systems. DCFS Lila Kari, Stavros Konstantinidis
2002	A*	`conf`	On the Decidability of Self-Assembly of Infinite Ribbons. FOCS Leonard M. Adleman, Jarkko Kari, Lila Kari, Dustin Reishus
2002	C	`conf`	Some Properties of Ciliate Bio-operations. Developments in Language Theory Mark Daley, Lila Kari
2001	J	`jnl`	A computer scientist's guide to molecular biology. Soft Comput. Lila Kari, Rob Kitto, Greg Gloor
2001	B	`conf`	Coding Properties of DNA Languages. DNA Salah Hussini, Lila Kari, Stavros Konstantinidis
2001	—	`conf`	Context-free recombinations. Where Mathematics, Computer Science, Linguistics and Biology Meet Jarkko Kari, Lila Kari
2001	—	`ch.`	DNA Computers: Tomorrow's Reality. Current Trends in Theoretical Computer Science Lila Kari
2001	J	`jnl`	DNA computing in vitro and in vivo. Future Gener. Comput. Syst. Lila Kari
2001	J	`jnl`	Morphisms preserving densities. Int. J. Comput. Math. Helmut Jürgensen, Lila Kari, Gabriel Thierrin
2001	—	`conf`	String Operations Suggested by DNA Biochemistry: The Balanced Cut Operation. Words, Semigroups, and Transductions Lila Kari, Andrei Paun
2000	J	`jnl`	Half century of automata theory. SIGACT News Lila Kari
2000	J	`jnl`	Shuffle and scattered deletion closure of languages. Theor. Comput. Sci. Masami Ito, Lila Kari, Gabriel Thierrin
2000	J	`jnl`	Using DNA to solve the Bounded Post Correspondence Problem. Theor. Comput. Sci. Lila Kari, Greg Gloor, Sheng Yu
1999	—	`conf`	Bringing PC Grammar Systems Closer to Hoare's CSPs. Grammatical Models of Multi-Agent Systems Lila Kari, Hanan Lutfiyya, Carlos Martín-Vide, Gheorghe Paun
1999	—	`conf`	Circular Contextual Insertions/Deletions with Applications to Biomolecular Computation. SPIRE/CRIWG Mark Daley, Lila Kari, Greg Gloor, Rani Siromoney
1999	—	`conf`	Computational power of gene rearrangement. DNA Based Computers Lila Kari, Laura F. Landweber
1999	J	`jnl`	DNA Computing Based on Splicing: The Existence of Universal Computers. Theory Comput. Syst. Rudolf Freund, Lila Kari, Gheorghe Paun
1999	—	`conf`	How to Compute with DNA. FSTTCS Lila Kari, Mark Daley, Greg Gloor, Rani Siromoney, Laura F. Landweber
1999	—	`conf`	Reversible Molecular Computation in Ciliates. Jewels are Forever Lila Kari, Jarkko Kari, Laura F. Landweber
1999	J	`jnl`	Towards a DNA Solution to the Shortest Common Superstring Problem. Int. J. Artif. Intell. Tools Greg Gloor, Lila Kari, Michelle Gaasenbeek, Sheng Yu
1998	J	`jnl`	DNA Computing, Sticker Systems, and Universality. Acta Informatica Lila Kari, Gheorghe Paun, Grzegorz Rozenberg, Arto Salomaa, Sheng Yu
1998	—	`conf`	Using DNA to solve the Bounded Post Correspondence Problem. MCU (1) Lila Kari, Greg Gloor, Sheng Yu
1997	—	`conf`	At the crossroads of DNA computing and formal languages: Characterizing recursively enumerable languages using insertion-deletion systems. DNA Based Computers Lila Kari, Gheorghe Paun, Gabriel Thierrin, Sheng Yu
1997	—	`conf`	From Micro-Soft to Bio-Soft: Computing With DNA. BCEC Lila Kari
1997	J	`jnl`	Insertion and Deletion Closure of Languages. Theor. Comput. Sci. Masami Ito, Lila Kari, Gabriel Thierrin
1997	—	`ch.`	L Systems. Handbook of Formal Languages (1) Lila Kari, Grzegorz Rozenberg, Arto Salomaa
1996	J	`jnl`	Contextual Insertions/Deletions and Computability. Inf. Comput. Lila Kari, Gabriel Thierrin
1996	J	`jnl`	Maximal and Minimal Solutions to Language Equations. J. Comput. Syst. Sci. Lila Kari, Gabriel Thierrin
1996	J	`jnl`	Omega-Syntactic Congruences. J. Autom. Lang. Comb. Lila Kari, Gabriel Thierrin
1996	J	`jnl`	Test Tube Distributed Systems Based on Splicing. Comput. Artif. Intell. Erzsébet Csuhaj-Varjú, Lila Kari, Gheorghe Paun
1996	J	`jnl`	The Power of Restricted Splicing with Rules from a Regular Language. J. Univers. Comput. Sci. Lila Kari, Gheorghe Paun, Arto Salomaa
1996	J	`jnl`	Two Lower Bounds on Distributive Generation of Languages. Fundam. Informaticae Juraj Hromkovic, Jarkko Kari, Lila Kari, Dana Pardubská
1995	J	`jnl`	Generalised DOL Trees. Acta Cybern. Lila Kari, Grzegorz Rozenberg, Arto Salomaa
1995	C	`conf`	Morphisms and Associated Congruences. Developments in Language Theory Lila Kari, Gabriel Thierrin
1995	J	`jnl`	Multi-Pattern Languages. Theor. Comput. Sci. Lila Kari, Alexandru Mateescu, Gheorghe Paun, Arto Salomaa
1995	J	`jnl`	On Parallel Deletions Applied to a Word. RAIRO Theor. Informatics Appl. Lila Kari, Alexandru Mateescu, Gheorghe Paun, Arto Salomaa
1995	J	`jnl`	Teams in cooperating grammar systems. J. Exp. Theor. Artif. Intell. Lila Kari, Alexandru Mateescu, Gheorghe Paun, Arto Salomaa
1994	—	`ch.`	Aperiodic Languages and Generalizations. Mathematical Aspects of Natural and Formal Languages Lila Kari, Gabriel Thierrin
1994	J	`jnl`	On Language Equations with Invertible Operations. Theor. Comput. Sci. Lila Kari
1994	—	`conf`	Power of Controlled Insertion and Deletion. Results and Trends in Theoretical Computer Science Lila Kari
1994	J	`jnl`	Some Hierarchies for the Communication Complexity Measures of Cooperating Grammar Systems. Theor. Comput. Sci. Juraj Hromkovic, Jarkko Kari, Lila Kari
1994	—	`conf`	Subapical Bracketed L-Systems. TAGT Przemyslaw Prusinkiewicz, Lila Kari
1994	B	`conf`	Two Lower Bounds on Distributive Generation of Languages. MFCS Juraj Hromkovic, Jarkko Kari, Lila Kari, Dana Pardubská
1993	J	`jnl`	Deletion Sets. Fundam. Informaticae Lila Kari, Alexandru Mateescu, Arto Salomaa, Gheorghe Paun
1993	J	`jnl`	Generalized Derivatives. Fundam. Informaticae Lila Kari
1993	J	`jnl`	Gramars with Oracles. Sci. Ann. Cuza Univ. Lila Kari, Alexandru Mateescu, Arto Salomaa, Gheorghe Paun
1993	—	`ch.`	In the prehistory of formal language theory: Gauss languages. Current Trends in Theoretical Computer Science Lila Kari, Solomon Marcus, Gheorghe Paun, Arto Salomaa
1993	J	`jnl`	Insertion operations: Closure properties. Bull. EATCS Lila Kari
1993	B	`conf`	Some Hierarchies for the Communication Complexity Measures of Cooperating Grammar Systems. MFCS Juraj Hromkovic, Jarkko Kari, Lila Kari
1992	J	`jnl`	In the prehistory of formal language theory: Gauss Languages. Bull. EATCS Lila Kari, Solomon Marcus, Gheorghe Paun, Arto Salomaa
1992	B	`conf`	Insertion and Deletion of Words: Determinism and Reversibility. MFCS Lila Kari