Lianyi Han

31 papers A* 1A 1Journal 28Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Microllm: a structured information extraction tool using large language models and named entity recognition in microbiology.
Briefings Bioinform.
Jing Lu, Fei Li, Lei Feng, Zhengyu Yu, Jianyu Lu, Mingyuan Qin, Shengnan She, Haoqiang Jiang, Zhiming Guo, Jingjing Xia, Lianyi Han
2025 J jnl
ZeroTuneBio NER: A three-stage framework for zero-shot and zero-tuning biomedical entity extraction using large language models and prompt engineering.
Comput. Methods Programs Biomed.
Mingyuan Qin, Lei Feng, Jing Lu, Ziyan Sun, Zhengyu Yu, Lianyi Han
2025 J jnl
rU-Net, Multi-Scale Feature Fusion and Transfer Learning: Unlocking the Potential of Cuffless Blood Pressure Monitoring With PPG and ECG.
IEEE J. Biomed. Health Informatics
Jiaming Chen, Xueling Zhou, Lei Feng, Bingo Wing-Kuen Ling, Lianyi Han, Hongtao Zhang
2024 J jnl
RVvictor: Virus RNA-directed molecular interactions for RNA virus infection.
Comput. Biol. Medicine
Kuerbannisha Amahong, Wei Zhang, Yu-hong Liu, Teng Li, Shijie Huang, Lianyi Han, Lin Tao, Feng Zhu
2023 J jnl
CovInter: interaction data between coronavirus RNAs and host proteins.
Nucleic Acids Res.
Kuerbannisha Amahong, Wei Zhang, Ying Zhou, Song Zhang, Jiayi Yin, Fengcheng Li, Hong-Quan Xu, Tian-Ci Yan, Zi-Xuan Yue, Yu-hong Liu, Tingjun Hou, Yunqing Qiu, Lin Tao, Lianyi Han, Feng Zhu
2022 A conf
MEGAN: Memory Enhanced Graph Attention Network for Space-Time Video Super-Resolution.
WACV
Chenyu You, Lianyi Han, Aosong Feng, Ruihan Zhao, Hui Tang, Wei Fan
2021 J jnl
MEGAN: Memory Enhanced Graph Attention Network for Space-Time Video Super-Resolution.
CoRR
Chenyu You, Lianyi Han, Aosong Feng, Ruihan Zhao, Hui Tang, Wei Fan
2021 J jnl
Object-Guided Instance Segmentation With Auxiliary Feature Refinement for Biological Images.
CoRR
Jingru Yi, Pengxiang Wu, Hui Tang, Bo Liu, Qiaoying Huang, Hui Qu, Lianyi Han, Wei Fan, Daniel J. Hoeppner, Dimitris N. Metaxas
2021 J jnl
Object-Guided Instance Segmentation With Auxiliary Feature Refinement for Biological Images.
IEEE Trans. Medical Imaging
Jingru Yi, Pengxiang Wu, Hui Tang, Bo Liu, Qiaoying Huang, Hui Qu, Lianyi Han, Wei Fan, Daniel J. Hoeppner, Dimitris N. Metaxas
2020 A* conf
Object-Guided Instance Segmentation for Biological Images.
AAAI
Jingru Yi, Hui Tang, Pengxiang Wu, Bo Liu, Daniel J. Hoeppner, Dimitris N. Metaxas, Lianyi Han, Wei Fan
2019 J jnl
Object-Guided Instance Segmentation for Biological Images.
CoRR
Jingru Yi, Hui Tang, Pengxiang Wu, Bo Liu, Daniel J. Hoeppner, Dimitris N. Metaxas, Lianyi Han, Wei Fan
2017 J jnl
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.
Nucleic Acids Res.
Aron Marchler-Bauer, Bo Yu, Lianyi Han, Jane He, Christopher J. Lanczycki, Shennan Lu, Farideh Chitsaz, Myra K. Derbyshire, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, Fu Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Zhouxi Wang, Roxanne A. Yamashita, Dachuan Zhang, Chanjuan Zheng, Lewis Y. Geer, Stephen H. Bryant
2016 J jnl
PubChem Substance and Compound databases.
Nucleic Acids Res.
Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A. Shoemaker, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant
2015 J jnl
PubChem structure-activity relationship (SAR) clusters.
J. Cheminformatics
Sunghwan Kim, Lianyi Han, Bo Yu, Volker Hähnke, Evan Bolton, Stephen H. Bryant
2015 J jnl
Target enhanced 2D similarity search by using explicit biological activity annotations and profiles.
J. Cheminformatics
Xiang Yu, Lewis Y. Geer, Lianyi Han, Stephen H. Bryant
2012 J jnl
PubChem's BioAssay Database.
Nucleic Acids Res.
Yanli Wang, Jewen Xiao, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Zhigang Zhou, Lianyi Han, Karen Karapetyan, Svetlana Dracheva, Benjamin A. Shoemaker, Evan Bolton, Asta Gindulyte, Stephen H. Bryant
2011 J jnl
PubChem3D: a new resource for scientists.
J. Cheminformatics
Evan Bolton, Jie Chen, Sunghwan Kim, Lianyi Han, Siqian He, Wenyao Shi, Vahan Simonyan, Yan Sun, Paul A. Thiessen, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant
2010 J jnl
The NCBI BioSystems database.
Nucleic Acids Res.
Lewis Y. Geer, Aron Marchler-Bauer, Renata C. Geer, Lianyi Han, Jane He, Siqian He, Chunlei Liu, Wenyao Shi, Stephen H. Bryant
2010 J jnl
The Text-mining based PubChem Bioassay neighboring analysis.
BMC Bioinform.
Lianyi Han, Tugba O. Suzek, Yanli Wang, Steve H. Bryant
2010 J jnl
Update of TTD: Therapeutic Target Database.
Nucleic Acids Res.
Feng Zhu, Bu-Cong Han, Pankaj Kumar, Xianghui Liu, Xiaohua Ma, XiaoNa Wei, Lu Huang, Yangfan Guo, Lianyi Han, Chanjuan Zheng, Yuzong Chen
2009 J jnl
A survey of across-target bioactivity results of small molecules in PubChem.
Bioinform.
Lianyi Han, Yanli Wang, Stephen H. Bryant
2008 J jnl
Developing and validating predictive decision tree models from mining chemical structural fingerprints and high-throughput screening data in PubChem.
BMC Bioinform.
Lianyi Han, Yanli Wang, Stephen H. Bryant
2007 J jnl
PharmGED: Pharmacogenetic Effect Database.
Nucleic Acids Res.
C. J. Zheng, Lianyi Han, B. Xie, C. Y. Liew, Serene A. K. Ong, J. Cui, H. L. Zhang, Z. Q. Tang, S. H. Gan, L. Jiang, Yuzong Chen
2006 J jnl
PEARLS: Program for Energetic Analysis of Receptor-Ligand System.
J. Chem. Inf. Model.
Lianyi Han, Honghuang Lin, Ze-Rong Li, C. J. Zheng, Zhi Wei Cao, B. Xie, Yuzong Chen
2006 J jnl
PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence.
Nucleic Acids Res.
Ze-Rong Li, Honghuang Lin, Lianyi Han, L. Jiang, X. Chen, Yuzong Chen
2006 — conf
Prediction of Transmembrane Proteins from Their Primary Sequence by Support Vector Machine Approach.
ICIC (3)
Congzhong Cai, Qianfei Yuan, Hanguang Xiao, Xinghua Liu, Lianyi Han, Yuzong Chen
2006 J jnl
Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach.
BMC Bioinform.
H. H. Lin, Lianyi Han, H. L. Zhang, C. J. Zheng, B. Xie, Zhi Wei Cao, Yuzong Chen
2004 J jnl
MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids.
Nucleic Acids Res.
Zhi Wei Cao, Ying Xue, Lianyi Han, B. Xie, H. Zhou, C. J. Zheng, Honghuang Lin, Yuzong Chen
2004 J jnl
TRMP: a database of therapeutically relevant multiple pathways.
Bioinform.
C. J. Zheng, H. Zhou, B. Xie, Lianyi Han, Chun Wei Yap, Yuzong Chen
2003 J jnl
KDBI: Kinetic Data of Bio-molecular Interactions database.
Nucleic Acids Res.
Zhi Liang Ji, X. Chen, C. J. Zheng, L. X. Yao, Lianyi Han, Wee Kiang Yeo, P. C. Chung, H. S. Puy, Y. T. Tay, A. Muhammad, Yuzong Chen
2003 J jnl
SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence.
Nucleic Acids Res.
Congzhong Cai, Lianyi Han, Zhi Liang Ji, X. Chen, Yuzong Chen