Liang Cheng

36 papers Journal 29Unranked 7
YearRankTypeTitle / Venue / Authors
2024 J jnl
Attention mechanism models for precision medicine.
Briefings Bioinform.
Liang Cheng
2024 J jnl
Blood microbial analyses reveal long-term effects of SARS-CoV-2 infection on patients who recovered from COVID-19.
Comput. Biol. Medicine
Ping Wang, Sainan Zhang, Changlu Qi, Chao Wang, Zijun Zhu, Lei Shi, Liang Cheng, Xue Zhang
2024 J jnl
SCancerRNA: Expression at the Single-cell Level and Interaction Resource of Non-coding RNA Biomarkers for Cancers.
Genom. Proteom. Bioinform.
Hongzhe Guo, Liyuan Zhang, Xinran Cui, Liang Cheng, Tianyi Zhao, Yadong Wang
2023 J jnl
KRT13-expressing epithelial cell population predicts better response to chemotherapy and immunotherapy in bladder cancer: Comprehensive evidences based on BCa database.
Comput. Biol. Medicine
Donghu Yu, Chen Chen, Le Sun, Shaojie Wu, Xiaoyu Tang, Liye Mei, Cheng Lei, Du Wang, Xinghuan Wang, Liang Cheng, Sheng Li
2023 J jnl
Microbiome characteristics description of COVID-19 patients based on bulk RNA-seq and scRNA-Seq data.
Comput. Biol. Medicine
Sainan Zhang, Xingwang Liu, Yue Zhao, Ping Wang, Rui Yu, Peigang Xu, Yue Jiang, Liang Cheng
2023 J jnl
gutMDisorder v2.0: a comprehensive database for dysbiosis of gut microbiota in phenotypes and interventions.
Nucleic Acids Res.
Changlu Qi, Yiting Cai, Kai Qian, Xuefeng Li, Jialiang Ren, Ping Wang, Tongze Fu, Tianyi Zhao, Liang Cheng, Lei Shi, Xue Zhang
2023 J jnl
iATMEcell: identification of abnormal tumor microenvironment cells to predict the clinical outcomes in cancer based on cell-cell crosstalk network.
Briefings Bioinform.
Yuqi Sheng, Jiashuo Wu, Xiangmei Li, Jiayue Qiu, Ji Li, Qinyu Ge, Liang Cheng, Junwei Han
2022 J jnl
A comprehensive review of the analysis and integration of omics data for SARS-CoV-2 and COVID-19.
Briefings Bioinform.
Zijun Zhu, Sainan Zhang, Ping Wang, Xinyu Chen, Jianxing Bi, Liang Cheng, Xue Zhang
2022 J jnl
A modified exchange algorithm for distributional robust optimization and applications in risk management.
Int. Trans. Oper. Res.
Hailin Sun, Dali Zhang, Soon-Yi Wu, Liang Cheng
2022 J jnl
ELECTRA-DTA: a new compound-protein binding affinity prediction model based on the contextualized sequence encoding.
J. Cheminformatics
Junjie Wang, Naifeng Wen, Chunyu Wang, Lingling Zhao, Liang Cheng
2022 J jnl
MGPLI: exploring multigranular representations for protein-ligand interaction prediction.
Bioinform.
Junjie Wang, Jie Hu, Huiting Sun, Mengdie Xu, Yun Yu, Yun Liu, Liang Cheng
2022 J jnl
Omics data analysis and integration for COVID-19 patients - editorial.
Briefings Bioinform.
Liang Cheng
2022 J jnl
SCovid: single-cell atlases for exposing molecular characteristics of COVID-19 across 10 human tissues.
Nucleic Acids Res.
Changlu Qi, Chao Wang, Lingling Zhao, Zijun Zhu, Ping Wang, Sainan Zhang, Liang Cheng, Xue Zhang
2022 J jnl
gutMGene: a comprehensive database for target genes of gut microbes and microbial metabolites.
Nucleic Acids Res.
Liang Cheng, Changlu Qi, Haixiu Yang, Minke Lu, Yiting Cai, Tongze Fu, Jialiang Ren, Qu Jin, Xue Zhang
2021 J jnl
CNA2Subpathway: identification of dysregulated subpathway driven by copy number alterations in cancer.
Briefings Bioinform.
Yuqi Sheng, Ying Jiang, Yang Yang, Xiangmei Li, Jiayue Qiu, Jiashuo Wu, Liang Cheng, Junwei Han
2021 J jnl
Deep-DRM: a computational method for identifying disease-related metabolites based on graph deep learning approaches.
Briefings Bioinform.
Tianyi Zhao, Yang Hu, Liang Cheng
2021 J jnl
Functional alterations caused by mutations reflect evolutionary trends of SARS-CoV-2.
Briefings Bioinform.
Liang Cheng, Xudong Han, Zijun Zhu, Changlu Qi, Ping Wang, Xue Zhang
2021 J jnl
SubtypeDrug: a software package for prioritization of candidate cancer subtype-specific drugs.
Bioinform.
Xudong Han, Qingfei Kong, Chonghui Liu, Liang Cheng, Junwei Han
2020 J jnl
DeepLGP: a novel deep learning method for prioritizing lncRNA target genes.
Bioinform.
Tianyi Zhao, Yang Hu, Jiajie Peng, Liang Cheng, Pier Luigi Martelli
2020 — conf
Identification of gene signature associated with type 2 diabetes mellitus by integrating mutation and expression data.
BIBM
Zijun Zhu, Xudong Han, Liang Cheng
2020 — conf
OntoSem: an Ontology Semantic Representation Methodology for Biomedical Domain.
BIBM
Lingling Zhao, Junjie Wang, Liang Cheng, Chunyu Wang
2020 J jnl
gutMDisorder: a comprehensive database for dysbiosis of the gut microbiota in disorders and interventions.
Nucleic Acids Res.
Liang Cheng, Changlu Qi, He Zhuang, Tongze Fu, Xue Zhang
2020 J jnl
psSubpathway: a software package for flexible identification of phenotype-specific subpathways in cancer progression.
Bioinform.
Junwei Han, Xudong Han, Qingfei Kong, Liang Cheng
2019 J jnl
Identifying Alzheimer's disease-related proteins by LRRGD.
BMC Bioinform.
Tianyi Zhao, Yang Hu, Tianyi Zang, Liang Cheng
2019 J jnl
LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse.
Nucleic Acids Res.
Liang Cheng, Pingping Wang, Rui Tian, Song Wang, Qinghua Guo, Meng Luo, Wenyang Zhou, Guiyou Liu, Huijie Jiang, Qinghua Jiang
2019 J jnl
MetSigDis: a manually curated resource for the metabolic signatures of diseases.
Briefings Bioinform.
Liang Cheng, Haixiu Yang, Hengqiang Zhao, Xiaoya Pei, Hongbo Shi, Jie Sun, Yunpeng Zhang, Zhenzhen Wang, Meng Zhou
2018 — conf
A Novel Method for Identifying Alzheimer's Disease-related Proteins.
BIBM
Yang Hu, Jun Zhang, Tianyi Zhao, Liang Cheng, Tianyi Zang
2018 J jnl
DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function.
Bioinform.
Liang Cheng, Yang Hu, Jie Sun, Meng Zhou, Qinghua Jiang
2018 J jnl
Identifying diseases-related metabolites using random walk.
BMC Bioinform.
Yang Hu, Tianyi Zhao, Ningyi Zhang, Tianyi Zang, Jun Zhang, Liang Cheng
2017 J jnl
A novel method to identify pre-microRNA in various species knowledge base on various species.
J. Biomed. Semant.
Tianyi Zhao, Ningyi Zhang, Ying Zhang, Jun Ren, Peigang Xu, Zhiyan Liu, Liang Cheng, Yang Hu
2017 J jnl
DisSetSim: an online system for calculating similarity between disease sets.
J. Biomed. Semant.
Yang Hu, Lingling Zhao, Zhiyan Liu, Hong Ju, Hongbo Shi, Peigang Xu, Yadong Wang, Liang Cheng
2016 — conf
A novel method to identify pre-microRNA in various species knowledge base.
BIBM
Tianyi Zhao, Ningyi Zhang, Jun Ren, Peigang Xu, Zhiyan Liu, Liang Cheng, Yang Hu
2016 — conf
DisSetSim: An online system for calculating similarity between disease sets.
BIBM
Yang Hu, Lingling Zhao, Zhiyan Liu, Hong Ju, Hongbo Shi, Peigang Xu, Yadong Wang, Liang Cheng
2016 — conf
InfDisSim: A novel method for measuring disease similarity based on information flow.
BIBM
Yang Hu, Meng Zhou, Hongbo Shi, Hong Ju, Qinghua Jiang, Liang Cheng
2015 J jnl
Using Semantic Association to Extend and Infer Literature-Oriented Relativity Between Terms.
IEEE ACM Trans. Comput. Biol. Bioinform.
Liang Cheng, Jie Li, Yang Hu, Yue Jiang, Yongzhuang Liu, Yan-Shuo Chu, Zhenxing Wang, Yadong Wang
2010 — conf
Alignment results of SOBOM for OAEI 2010.
OM
Peigang Xu, Yadong Wang, Liang Cheng, Tianyi Zang