Liang-Hu Qu

19 papers Journal 19
YearRankTypeTitle / Venue / Authors
2023 J jnl
ChIPBase v3.0: the encyclopedia of transcriptional regulations of non-coding RNAs and protein-coding genes.
Nucleic Acids Res.
Junhong Huang, Wu-Jian Zheng, Ping Zhang, Qiao Lin, Zhi-Rong Chen, Jia-Jia Xuan, Chang Liu, Di Wu, Qiaojuan Huang, Ling-Ling Zheng, Shurong Liu, Keren Zhou, Liang-Hu Qu, Bin Li, Jian-Hua Yang
2023 J jnl
tModBase: deciphering the landscape of tRNA modifications and their dynamic changes from epitranscriptome data.
Nucleic Acids Res.
Hao-Tian Lei, Zhang-Hao Wang, Bin Li, Yang Sun, Shi-Qiang Mei, Jian-Hua Yang, Liang-Hu Qu, Ling-Ling Zheng
2022 J jnl
Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs.
Nucleic Acids Res.
Li Cai, Jia-Jia Xuan, Qiao Lin, Junhao Wang, Shurong Liu, Fangzhou Xie, Ling-Ling Zheng, Bin Li, Liang-Hu Qu, Jianhua Yang
2022 J jnl
tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data.
Nucleic Acids Res.
Jun-Hao Wang, Wen-Xin Chen, Shi-Qiang Mei, Yue-Dong Yang, Jian-Hua Yang, Liang-Hu Qu, Ling-Ling Zheng
2021 J jnl
ColorCells: a database of expression, classification and functions of lncRNAs in single cells.
Briefings Bioinform.
Ling-Ling Zheng, Jing-Hua Xiong, Wu-Jian Zheng, Jun-Hao Wang, Zi-Liang Huang, Zhi-Rong Chen, Xin-Yao Sun, Yi-Min Zheng, Keren Zhou, Bin Li, Shun Liu, Liang-Hu Qu, Jian-Hua Yang
2021 J jnl
deepBase v3.0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data.
Nucleic Acids Res.
Fangzhou Xie, Shurong Liu, Junhao Wang, Jia-Jia Xuan, Xiaoqin Zhang, Liang-Hu Qu, Ling-Ling Zheng, Jianhua Yang
2018 J jnl
Applications of RNA Indexes for Precision Oncology in Breast Cancer.
Genom. Proteom. Bioinform.
Liming Ma, Zirui Liang, Hui Zhou, Liang-Hu Qu
2018 J jnl
RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data.
Nucleic Acids Res.
Jia-Jia Xuan, Wen-Ju Sun, Peng-Hui Lin, Keren Zhou, Shun Liu, Ling-Ling Zheng, Liang-Hu Qu, Jian-Hua Yang
2018 J jnl
dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease.
Nucleic Acids Res.
Ling-Ling Zheng, Keren Zhou, Shun Liu, Dingyao Zhang, Ze-Lin Wang, Zhi-Rong Chen, Jian-Hua Yang, Liang-Hu Qu
2017 J jnl
ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data.
Nucleic Acids Res.
Keren Zhou, Shun Liu, Wen-Ju Sun, Ling-Ling Zheng, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu
2016 J jnl
RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data.
Nucleic Acids Res.
Wen-Ju Sun, Jun-Hao Li, Shun Liu, Jie Wu, Hui Zhou, Liang-Hu Qu, Jian-Hua Yang
2016 J jnl
deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data.
Nucleic Acids Res.
Ling-Ling Zheng, Jun-Hao Li, Jie Wu, Wen-Ju Sun, Shun Liu, Ze-Lin Wang, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu
2016 J jnl
tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers.
Nucleic Acids Res.
Ling-Ling Zheng, Wei-Lin Xu, Shun Liu, Wen-Ju Sun, Jun-Hao Li, Jie Wu, Jian-Hua Yang, Liang-Hu Qu
2015 J jnl
StarScan: a web server for scanning small RNA targets from degradome sequencing data.
Nucleic Acids Res.
Shun Liu, Jun-Hao Li, Jie Wu, Keren Zhou, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu
2014 J jnl
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.
Nucleic Acids Res.
Jun-Hao Li, Shun Liu, Hui Zhou, Liang-Hu Qu, Jian-Hua Yang
2013 J jnl
ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data.
Nucleic Acids Res.
Jian-Hua Yang, Jun-Hao Li, Shan Jiang, Hui Zhou, Liang-Hu Qu
2011 J jnl
starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.
Nucleic Acids Res.
Jian-Hua Yang, Jun-Hao Li, Peng Shao, Hui Zhou, Yue-Qin Chen, Liang-Hu Qu
2010 J jnl
deepBase: a database for deeply annotating and mining deep sequencing data.
Nucleic Acids Res.
Jian-Hua Yang, Peng Shao, Hui Zhou, Yue-Qin Chen, Liang-Hu Qu
2003 J jnl
Plant snoRNA database.
Nucleic Acids Res.
John W. S. Brown, Manuel Echeverria, Liang-Hu Qu, Todd M. Lowe, Jean-Pierre Bachellerie, Alexander Hüttenhofer, James P. Kastenmayer, Pamela J. Green, Paul D. Shaw, David F. Marshall