Liam J. McGuffin

30 papers Journal 29Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
Benchmarking of AlphaFold2 accuracy self-estimates as indicators of empirical model quality and ranking: a comparison with independent model quality assessment programmes.
Bioinform.
Nicholas S. Edmunds, Ahmet G. Genc, Liam J. McGuffin
2023 J jnl
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.
Nucleic Acids Res.
Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan
2023 J jnl
Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers.
Nucleic Acids Res.
Liam J. McGuffin, Nicholas S. Edmunds, Ahmet G. Genc, Shuaa M. A Alharbi, Bajuna R. Salehe, Recep Adiyaman
2021 J jnl
ModFOLD8: accurate global and local quality estimates for 3D protein models.
Nucleic Acids Res.
Liam J. McGuffin, Fahd M. F. Aldowsari, Shuaa M. A Alharbi, Recep Adiyaman
2021 J jnl
ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts.
Nucleic Acids Res.
Recep Adiyaman, Liam J. McGuffin
2019 J jnl
IntFOLD: an integrated web resource for high performance protein structure and function prediction.
Nucleic Acids Res.
Liam J. McGuffin, Recep Adiyaman, Ali H. A. Maghrabi, Ahmad N. Shuid, Danielle A. Brackenridge, John O. Nealon, Limcy S. Philomina
2017 J jnl
ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models.
Nucleic Acids Res.
Ali H. A. Maghrabi, Liam J. McGuffin
2017 J jnl
ReFOLD: a server for the refinement of 3D protein models guided by accurate quality estimates.
Nucleic Acids Res.
Ahmad N. Shuid, Robert Kempster, Liam J. McGuffin
2015 J jnl
IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences.
Nucleic Acids Res.
Liam J. McGuffin, Jennifer D. Atkins, Bajuna R. Salehe, Ahmad N. Shuid, Daniel B. Roche
2013 J jnl
The FunFOLD2 server for the prediction of protein-ligand interactions.
Nucleic Acids Res.
Daniel B. Roche, Maria T. Buenavista, Liam J. McGuffin
2013 J jnl
The ModFOLD4 server for the quality assessment of 3D protein models.
Nucleic Acids Res.
Liam J. McGuffin, Maria T. Buenavista, Daniel B. Roche
2012 J jnl
Improvement of 3D protein models using multiple templates guided by single-template model quality assessment.
Bioinform.
Maria T. Buenavista, Daniel B. Roche, Liam J. McGuffin
2011 J jnl
FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins.
BMC Bioinform.
Daniel B. Roche, Stuart J. Tetchner, Liam J. McGuffin
2011 J jnl
The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction.
Nucleic Acids Res.
Daniel B. Roche, Maria T. Buenavista, Stuart J. Tetchner, Liam J. McGuffin
2010 J jnl
Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments.
Bioinform.
Liam J. McGuffin, Daniel B. Roche
2010 J jnl
The binding site distance test score: a robust method for the assessment of predicted protein binding sites.
Bioinform.
Daniel B. Roche, Stuart J. Tetchner, Liam J. McGuffin
2008 J jnl
Intrinsic disorder prediction from the analysis of multiple protein fold recognition models.
Bioinform.
Liam J. McGuffin
2008 J jnl
The ModFOLD server for the quality assessment of protein structural models.
Bioinform.
Liam J. McGuffin
2007 J jnl
Benchmarking consensus model quality assessment for protein fold recognition.
BMC Bioinform.
Liam J. McGuffin
2006 J jnl
High throughput profile-profile based fold recognition for the entire human proteome.
BMC Bioinform.
Liam J. McGuffin, Richard T. Smith, Kevin Bryson, Søren-Aksel Sørensen, David T. Jones
2005 J jnl
Improving sequence-based fold recognition by using 3D model quality assessment.
Bioinform.
Chris Steven Pettitt, Liam J. McGuffin, David T. Jones
2005 J jnl
Protein structure prediction servers at University College London.
Nucleic Acids Res.
Kevin Bryson, Liam J. McGuffin, Russell L. Marsden, Jonathan J. Ward, Jaspreet Singh Sodhi, David T. Jones
2004 — conf
Automatic Prediction of Functional Site Regions in Low-Resolution Protein Structures.
CSB
Jaspreet Singh Sodhi, Liam J. McGuffin, Kevin Bryson, Jonathan J. Ward, Lorenz Wernisch, David T. Jones
2004 J jnl
The DISOPRED server for the prediction of protein disorder.
Bioinform.
Jonathan J. Ward, Liam J. McGuffin, Kevin Bryson, Bernard F. Buxton, David T. Jones
2004 J jnl
The Genomic Threading Database.
Bioinform.
Liam J. McGuffin, Stefano A. Street, Søren-Aksel Sørensen, David T. Jones
2004 J jnl
The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms.
Nucleic Acids Res.
Liam J. McGuffin, Stefano A. Street, Kevin Bryson, Søren-Aksel Sørensen, David T. Jones
2003 J jnl
Improvement of the GenTHREADER Method for Genomic Fold Recognition.
Bioinform.
Liam J. McGuffin, David T. Jones
2003 J jnl
Secondary structure prediction with support vector machines.
Bioinform.
Jonathan J. Ward, Liam J. McGuffin, Bernard F. Buxton, David T. Jones
2001 J jnl
What are the baselines for protein fold recognition?
Bioinform.
Liam J. McGuffin, Kevin Bryson, David T. Jones
2000 J jnl
The PSIPRED protein structure prediction server.
Bioinform.
Liam J. McGuffin, Kevin Bryson, David T. Jones