Leonid Chindelevitch

36 papers A* 2B 3C 3Misc 1Journal 21Unranked 6
YearRankTypeTitle / Venue / Authors
2024 J jnl
Counting Sorting Scenarios and Intermediate Genomes for the Rank Distance.
IEEE ACM Trans. Comput. Biol. Bioinform.
João Paulo Pereira Zanetti, Lucas Peres Oliveira, João Meidanis, Leonid Chindelevitch
2023 J jnl
Generalizations of the genomic rank distance to indels.
Bioinform.
João Paulo Pereira Zanetti, Lucas Peres Oliveira, Leonid Chindelevitch, João Meidanis
2023 J jnl
Speeding Up the Structural Analysis of Metabolic Network Models Using the Fredman-Khachiyan Algorithm B.
J. Comput. Biol.
Nafiseh Sedaghat, Tamon Stephen, Leonid Chindelevitch
2023 J jnl
Ten simple rules for the sharing of bacterial genotype - Phenotype data on antimicrobial resistance.
PLoS Comput. Biol.
Leonid Chindelevitch, Maarten van Dongen, Heather Graz, Antonio Pedrotta, Anita Suresh, Swapna Uplekar, Elita Jauneikaite, Nicole E. Wheeler
2023 J jnl
fastlin: an ultra-fast program for
Bioinform.
Romain Derelle, John Lees, Jody Phelan, Ajit Lalvani, Nimalan Arinaminpathy, Leonid Chindelevitch
2022 J jnl
Applying data technologies to combat AMR: current status, challenges, and opportunities on the way forward.
CoRR
Leonid Chindelevitch, Elita Jauneikaite, Nicole E. Wheeler, Kasim Allel, Bede Yaw Ansiri-Asafoakaa, Wireko A. Awuah, Denis C. Bauer, Stephan Beisken, Kara Fan, Gary Grant, Michael Graz, Yara Khalaf, Veranja Liyanapathirana, Carlos Montefusco-Pereira, Lawrence Mugisha, Atharv Naik, Sylvia Nanono, Anthony Nguyen, Timothy Rawson, Kessendri Reddy, Juliana M. Ruzante, Anneke Schmider, Roman Stocker, Leonhardt Unruh, Daniel Waruingi, Heather Graz, Maarten van Dongen
2022 J jnl
Aristotle: stratified causal discovery for omics data.
BMC Bioinform.
Mehrdad Mansouri, Sahand Khakabimamaghani, Leonid Chindelevitch, Martin Ester
2021 J jnl
INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis.
Algorithms Mol. Biol.
Hooman Zabeti, Nick C. Dexter, Amir Hosein Safari, Nafiseh Sedaghat, Maxwell W. Libbrecht, Leonid Chindelevitch
2021 — conf
Predicting drug resistance in
BCB
Amir Hosein Safari, Nafiseh Sedaghat, Hooman Zabeti, Alpha Forna, Leonid Chindelevitch, Maxwell W. Libbrecht
2020 C conf
An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis.
WABI
Hooman Zabeti, Nick C. Dexter, Amir Hosein Safari, Nafiseh Sedaghat, Maxwell W. Libbrecht, Leonid Chindelevitch
2020 J jnl
Computing the distribution of the Robinson-Foulds distance.
Comput. Biol. Chem.
Maryam Hayati, Leonid Chindelevitch
2020 A* conf
How Robust are the Estimated Effects of Nonpharmaceutical Interventions against COVID-19?
NeurIPS
Mrinank Sharma, Sören Mindermann, Jan Markus Brauner, Gavin Leech, Anna B. Stephenson, Tomas Gavenciak, Jan Kulveit, Yee Whye Teh, Leonid Chindelevitch, Yarin Gal
2020 J jnl
On the robustness of effectiveness estimation of nonpharmaceutical interventions against COVID-19 transmission.
CoRR
Mrinank Sharma, Sören Mindermann, Jan Markus Brauner, Gavin Leech, Anna B. Stephenson, Tomas Gavenciak, Jan Kulveit, Yee Whye Teh, Leonid Chindelevitch, Yarin Gal
2020 — conf
PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals.
AlCoB
Mohsen Katebi, Pedro Feijão, Julius Booth, Mehrdad Mansouri, Sean La, Alex Sweeten, Reza Miraskarshahi, Matthew Nguyen, Johnathan Wong, William Hsiao, Cédric Chauve, Leonid Chindelevitch
2019 J jnl
A cubic algorithm for the generalized rank median of three genomes.
Algorithms Mol. Biol.
Leonid Chindelevitch, Sean La, Joao Meidanis
2019 J jnl
Collaborative intra-tumor heterogeneity detection.
Bioinform.
Sahand Khakabimamaghani, Salem Malikic, Jeffrey Tang, Dujian Ding, Ryan D. Morin, Leonid Chindelevitch, Martin Ester
2019 — conf
Counting Sorting Scenarios and Intermediate Genomes for the Rank Distance.
AlCoB
João Paulo Pereira Zanetti, Leonid Chindelevitch, João Meidanis
2019 J jnl
Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework.
BMC Bioinform.
Guo Liang Gan, Elijah Willie, Cédric Chauve, Leonid Chindelevitch
2019 — conf
Generalizations of the Genomic Rank Distance to Indels.
AlCoB
João Paulo Pereira Zanetti, Leonid Chindelevitch, João Meidanis
2019 J jnl
MCS2: minimal coordinated supports for fast enumeration of minimal cut sets in metabolic networks.
Bioinform.
Reza Miraskarshahi, Hooman Zabeti, Tamon Stephen, Leonid Chindelevitch
2018 — conf
A Cubic Algorithm for the Generalized Rank Median of Three Genomes.
RECOMB-CG
Leonid Chindelevitch, Joao Meidanis
2018 C conf
A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models.
WABI
Hooman Zabeti, Tamon Stephen, Bonnie Berger, Leonid Chindelevitch
2018 J jnl
On the rank-distance median of 3 permutations.
BMC Bioinform.
Leonid Chindelevitch, João Paulo Pereira Zanetti, João Meidanis
2018 C conf
PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats.
WABI
Mehrdad Mansouri, Julian Booth, Margaryta Vityaz, Cédric Chauve, Leonid Chindelevitch
2018 B conf
Speeding up Dualization in the Fredman-Khachiyan Algorithm B.
SEA
Nafiseh Sedaghat, Tamon Stephen, Leonid Chindelevitch
2017 — conf
On the Rank-Distance Median of 3 Permutations.
RECOMB-CG
Leonid Chindelevitch, João Meidanis
2016 J jnl
ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to
PLoS Comput. Biol.
Leonid Chindelevitch, Caroline Colijn, Prashini Moodley, Douglas Wilson, Ted Cohen
2013 J jnl
Optimizing a global alignment of protein interaction networks.
Bioinform.
Leonid Chindelevitch, Cheng-Yu Ma, Chung-Shou Liao, Bonnie Berger
2012 J jnl
Assessing statistical significance in causal graphs.
BMC Bioinform.
Leonid Chindelevitch, Po-Ru Loh, Ahmed Enayetallah, Bonnie Berger, Daniel Ziemek
2012 J jnl
Causal reasoning on biological networks: interpreting transcriptional changes.
Bioinform.
Leonid Chindelevitch, Daniel Ziemek, Ahmed Enayetallah, Ranjit Randhawa, Ben Sidders, Christoph Brockel, Enoch S. Huang
2012 J jnl
Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge.
BMC Bioinform.
Chia-Ling Huang, John Lamb, Leonid Chindelevitch, Jarek Kostrowicki, Justin Guinney, Charles DeLisi, Daniel Ziemek
2011 B conf
Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes - (Extended Abstract).
RECOMB
Leonid Chindelevitch, Daniel Ziemek, Ahmed Enayetallah, Ranjit Randhawa, Ben Sidders, Christoph Brockel, Enoch S. Huang
2011 B conf
Metabolic Network Analysis Demystified.
RECOMB
Leonid Chindelevitch, Aviv Regev, Bonnie Berger
2010 Misc conf
Local Optimization for Global Alignment of Protein Interaction Networks.
Pacific Symposium on Biocomputing
Leonid Chindelevitch, Chung-Shou Liao, Bonnie Berger
2008 A* conf
Inverting the Viterbi algorithm: an abstract framework for structure design.
ICML
Michael Schnall-Levin, Leonid Chindelevitch, Bonnie Berger
2006 J jnl
On the Inference of Parsimonious Indel Evolutionary Scenarios.
J. Bioinform. Comput. Biol.
Leonid Chindelevitch, Zhentao Li, Eric Blais, Mathieu Blanchette