Leonard A. Harris

11 papers Misc 1Journal 9Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Unified tumor growth mechanisms from multimodel inference and dataset integration.
PLoS Comput. Biol.
Samantha P. Beik, Leonard A. Harris, Michael A. Kochen, Julien Sage, Vito Quaranta, Carlos F. Lopez
2021 J jnl
Thunor: visualization and analysis of high-throughput dose-response datasets.
Nucleic Acids Res.
Alexander L. R. Lubbock, Leonard A. Harris, Vito Quaranta, Darren R. Tyson, Carlos F. Lopez
2021 J jnl
Unsupervised logic-based mechanism inference for network-driven biological processes.
PLoS Comput. Biol.
Martina Prugger, Lukas Einkemmer, Samantha P. Beik, Perry T. Wasdin, Leonard A. Harris, Carlos F. Lopez
2020 J jnl
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2.
J. Integr. Bioinform.
Fengkai Zhang, Lucian P. Smith, Michael L. Blinov, James R. Faeder, William S. Hlavacek, José Juan Tapia, Sarah M. Keating, Nicolas Rodriguez, Andreas Dräger, Leonard A. Harris, Andrew Finney, Bin Hu, Michael Hucka, Martin Meier-Schellersheim
2017 J jnl
Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.
PLoS Comput. Biol.
Julia Chifman, Seda Arat, Zhiyong Deng, Erica Lemler, James C. Pino, Leonard A. Harris, Michael A. Kochen, Carlos F. Lopez, Steven A. Akman, Frank M. Torti, Suzy V. Torti, Reinhard C. Laubenbacher
2017 J jnl
GPU-powered model analysis with PySB/cupSODA.
Bioinform.
Leonard A. Harris, Marco S. Nobile, James C. Pino, Alexander L. R. Lubbock, Daniela Besozzi, Giancarlo Mauri, Paolo Cazzaniga, Carlos F. Lopez
2016 J jnl
BioNetGen 2.2: advances in rule-based modeling.
Bioinform.
Leonard A. Harris, Justin S. Hogg, José Juan Tapia, John A. P. Sekar, Sanjana Gupta, Ilya Korsunsky, Arshi Arora, Dipak Barua, Robert P. Sheehan, James R. Faeder
2014 J jnl
Exact Hybrid Particle/Population Simulation of Rule-Based Models of Biochemical Systems.
PLoS Comput. Biol.
Justin S. Hogg, Leonard A. Harris, Lori J. Stover, Niketh S. Nair, James R. Faeder
2014 J jnl
MOSBIE: a tool for comparison and analysis of rule-based biochemical models.
BMC Bioinform.
John E. Wenskovitch, Leonard A. Harris, José Juan Tapia, James R. Faeder, G. Elisabeta Marai
2009 Misc conf
Compartmental Rule-based Modeling of Biochemical Systems.
WSC
Leonard A. Harris, Justin S. Hogg, James R. Faeder
2008 — conf
Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway.
CMSB
Edmund M. Clarke, James R. Faeder, Christopher James Langmead, Leonard A. Harris, Sumit Kumar Jha, Axel Legay