Leo van Iersel

100 papers A 1B 5C 6Journal 84Unranked 4

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Class of Unrooted Phylogenetic Networks Inspired by the Properties of Rooted Tree-Child Networks. CoRR Leo van Iersel, Mark Jones, Simone Linz, Norbert Zeh
2026	J	`jnl`	Exact and heuristic computation of the scanwidth of directed acyclic graphs. J. Comput. Syst. Sci. Niels Holtgrefe, Leo van Iersel, Mark Jones
2026	J	`jnl`	Metrics for classes of semi-binary phylogenetic networks using μ-representations. Adv. Appl. Math. Christopher Reichling, Leo van Iersel, Yukihiro Murakami
2025	J	`jnl`	A simple 4-approximation algorithm for maximum agreement forests on multiple unrooted binary trees. Inf. Process. Lett. Jordan Dempsey, Leo van Iersel, Mark Jones, Norbert Zeh
2025	C	`conf`	Average-Tree Phylogenetic Diversity of Networks. WABI Leo van Iersel, Mark Jones, Jannik Schestag, Céline Scornavacca, Mathias Weller
2025	J	`jnl`	Fence Decompositions and Cherry Covers in Non-Binary Phylogenetic Networks. IEEE Trans. Comput. Biol. Bioinform. Joan Carles Pons, Pau Vives López, Yukihiro Murakami, Leo van Iersel
2025	J	`jnl`	Is this network proper forest-based? Inf. Process. Lett. Katharina T. Huber, Leo van Iersel, Vincent Moulton, Guillaume E. Scholz
2025	—	`conf`	Phylogenetic Network Diversity Parameterized by Reticulation Number and Beyond. RECOMB-CG Leo van Iersel, Mark Jones, Jannik Schestag, Céline Scornavacca, Mathias Weller
2025	J	`jnl`	Reconstructing semi-directed level-1 networks using few quarnets. J. Comput. Syst. Sci. Martin Frohn, Niels Holtgrefe, Leo van Iersel, Mark Jones, Steven Kelk
2024	J	`jnl`	A Simple 4-Approximation Algorithm for Maximum Agreement Forests on Multiple Unrooted Binary Trees. CoRR Jordan Dempsey, Leo van Iersel, Mark Jones, Norbert Zeh
2024	J	`jnl`	A Wild Sheep Chase Through an Orchard. CoRR Jordan Dempsey, Leo van Iersel, Mark Jones, Yukihiro Murakami, Norbert Zeh
2024	J	`jnl`	A near-linear kernel for bounded-state parsimony distance. J. Comput. Syst. Sci. Elise Deen, Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2024	J	`jnl`	Encoding Semi-Directed Phylogenetic Networks with Quarnets. CoRR Katharina T. Huber, Leo van Iersel, Mark Jones, Vincent Moulton, Leonie Veenema-Nipius
2024	J	`jnl`	Exact and Heuristic Computation of the Scanwidth of Directed Acyclic Graphs. CoRR Niels Holtgrefe, Leo van Iersel, Mark Jones
2024	J	`jnl`	Maximizing Network Phylogenetic Diversity. CoRR Leo van Iersel, Mark Jones, Jannik Schestag, Céline Scornavacca, Mathias Weller
2024	J	`jnl`	Orienting undirected phylogenetic networks. J. Comput. Syst. Sci. Katharina T. Huber, Leo van Iersel, Remie Janssen, Mark Jones, Vincent Moulton, Yukihiro Murakami, Charles Semple
2024	J	`jnl`	Reconstructing semi-directed level-1 networks using few quarnets. CoRR Martin Frohn, Niels Holtgrefe, Leo van Iersel, Mark Jones, Steven Kelk
2024	J	`jnl`	Solving the Tree Containment Problem Using Graph Neural Networks. CoRR Arkadiy Dushatskiy, Esther Julien, Leo van Iersel, Leen Stougie
2024	J	`jnl`	Solving the Tree Containment Problem Using Graph Neural Networks. Trans. Mach. Learn. Res. Arkadiy Dushatskiy, Esther Julien, Leen Stougie, Leo van Iersel
2023	J	`jnl`	Constructing Phylogenetic Networks via Cherry Picking and Machine Learning. CoRR Giulia Bernardini, Leo van Iersel, Esther Julien, Leen Stougie
2023	J	`jnl`	Constructing phylogenetic networks via cherry picking and machine learning. Algorithms Mol. Biol. Giulia Bernardini, Leo van Iersel, Esther Julien, Leen Stougie
2023	J	`jnl`	Embedding phylogenetic trees in networks of low treewidth. Discret. Math. Theor. Comput. Sci. Leo van Iersel, Mark Jones, Mathias Weller
2023	C	`conf`	Making a Network Orchard by Adding Leaves. WABI Leo van Iersel, Mark Jones, Esther Julien, Yukihiro Murakami
2023	J	`jnl`	Making a Network Orchard by Adding Leaves. CoRR Leo van Iersel, Mark Jones, Esther Julien, Yukihiro Murakami
2023	J	`jnl`	Polynomial invariants for cactuses. Inf. Process. Lett. Leo van Iersel, Vincent Moulton, Yukihiro Murakami
2022	J	`jnl`	A Near-Linear Kernel for Two-Parsimony Distance. CoRR Elise Deen, Leo van Iersel, Remie Janssen, Mark Jones, Yuki Murakami, Norbert Zeh
2022	J	`jnl`	A Practical Fixed-Parameter Algorithm for Constructing Tree-Child Networks from Multiple Binary Trees. Algorithmica Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2022	J	`jnl`	An algorithm for reconstructing level-2 phylogenetic networks from trinets. Inf. Process. Lett. Leo van Iersel, Sjors Kole, Vincent Moulton, Leonie Nipius
2022	A	`conf`	Embedding Phylogenetic Trees in Networks of Low Treewidth. ESA Leo van Iersel, Mark Jones, Mathias Weller
2022	J	`jnl`	Embedding phylogenetic trees in networks of low treewidth. CoRR Leo van Iersel, Mark Jones, Mathias Weller
2022	J	`jnl`	Level-2 networks from shortest and longest distances. Discret. Appl. Math. Katharina T. Huber, Leo van Iersel, Remie Janssen, Mark Jones, Vincent Moulton, Yukihiro Murakami
2022	J	`jnl`	New FPT Algorithms for Finding the Temporal Hybridization Number for Sets of Phylogenetic Trees. Algorithmica Sander Borst, Leo van Iersel, Mark Jones, Steven Kelk
2022	C	`conf`	Reconstructing Phylogenetic Networks via Cherry Picking and Machine Learning. WABI Giulia Bernardini, Leo van Iersel, Esther Julien, Leen Stougie
2021	J	`jnl`	A unifying characterization of tree-based networks and orchard networks using cherry covers. Adv. Appl. Math. Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2021	J	`jnl`	An algorithm for reconstructing level-2 phylogenetic networks from trinets. CoRR Leo van Iersel, Sjors Kole, Vincent Moulton, Leonie Nipius
2020	J	`jnl`	New FPT algorithms for finding the temporal hybridization number for sets of phylogenetic trees. CoRR Sander Borst, Leo van Iersel, Mark Jones, Steven Kelk
2020	J	`jnl`	Polynomial-Time Algorithms for Phylogenetic Inference Problems Involving Duplication and Reticulation. IEEE ACM Trans. Comput. Biol. Bioinform. Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2020	J	`jnl`	Reconstructibility of unrooted level- Adv. Appl. Math. Leo van Iersel, Vincent Moulton, Yukihiro Murakami
2019	J	`jnl`	A Practical Fixed-Parameter Algorithm for Constructing Tree-Child Networks from Multiple Binary Trees. CoRR Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2019	J	`jnl`	Cutting an alignment with Ockham's razor. CoRR Mark Jones, Philippe Gambette, Leo van Iersel, Remie Janssen, Steven Kelk, Fabio Pardi, Céline Scornavacca
2019	J	`jnl`	Deciding the existence of a cherry-picking sequence is hard on two trees. Discret. Appl. Math. Janosch Döcker, Leo van Iersel, Steven Kelk, Simone Linz
2019	J	`jnl`	Rooting for phylogenetic networks. CoRR Katharina T. Huber, Leo van Iersel, Remie Janssen, Mark Jones, Vincent Moulton, Yukihiro Murakami, Charles Semple
2018	J	`jnl`	A third strike against perfect phylogeny. CoRR Leo van Iersel, Mark Jones, Steven Kelk
2018	J	`jnl`	Leaf-Reconstructibility of Phylogenetic Networks. SIAM J. Discret. Math. Leo van Iersel, Vincent Moulton
2018	J	`jnl`	Nonbinary Tree-Based Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Laura Jetten, Leo van Iersel
2018	J	`jnl`	On Unrooted and Root-Uncertain Variants of Several Well-Known Phylogenetic Network Problems. Algorithmica Leo van Iersel, Steven Kelk, Georgios Stamoulis, Leen Stougie, Olivier Boes
2018	J	`jnl`	Parallel Machine Scheduling with a Single Resource per Job. CoRR Teun Janssen, Céline M. F. Swennenhuis, Abdoul Bitar, Thomas Bosman, Dion Gijswijt, Leo van Iersel, Stéphane Dauzère-Pérès, Claude Yugma
2018	—	`conf`	Polynomial-Time Algorithms for Phylogenetic Inference Problems. AlCoB Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2017	J	`jnl`	Binets: fundamental building blocks for phylogenetic networks. CoRR Leo van Iersel, Vincent Moulton, Eveline de Swart, Taoyang Wu
2017	J	`jnl`	Deciding the existence of a cherry-picking sequence is hard on two trees. CoRR Janosch Döcker, Leo van Iersel, Steven Kelk, Simone Linz
2017	J	`jnl`	Exploring the tiers of rooted phylogenetic network space using tail moves. CoRR Remie Janssen, Mark Jones, Péter L. Erdös, Leo van Iersel, Céline Scornavacca
2017	J	`jnl`	Finding the most parsimonious or likely tree in a network with respect to an alignment. CoRR Steven Kelk, Fabio Pardi, Céline Scornavacca, Leo van Iersel
2017	J	`jnl`	Graph Realizations Constrained by Skeleton Graphs. Electron. J. Comb. Péter L. Erdös, Stephen G. Hartke, Leo van Iersel, István Miklós
2017	J	`jnl`	Rearrangement moves on rooted phylogenetic networks. PLoS Comput. Biol. Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, Céline Scornavacca
2017	J	`jnl`	Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets. Algorithmica Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu
2016	B	`conf`	A priori TSP in the Scenario Model. WAOA Martijn van Ee, Leo van Iersel, Teun Janssen, René Sitters
2016	J	`jnl`	Do branch lengths help to locate a tree in a phylogenetic network? CoRR Philippe Gambette, Leo van Iersel, Steven Kelk, Fabio Pardi, Céline Scornavacca
2016	J	`jnl`	Hybridization Number on Three Rooted Binary Trees is EPT. SIAM J. Discret. Math. Leo van Iersel, Steven Kelk, Nela Lekic, Chris Whidden, Norbert Zeh
2016	J	`jnl`	Kernelizations for the hybridization number problem on multiple nonbinary trees. J. Comput. Syst. Sci. Leo van Iersel, Steven Kelk, Céline Scornavacca
2016	J	`jnl`	Nonbinary tree-based phylogenetic networks. CoRR Laura Jetten, Leo van Iersel
2016	J	`jnl`	On unrooted and root-uncertain variants of several well-known phylogenetic network problems. CoRR Leo van Iersel, Steven Kelk, Georgios Stamoulis, Leen Stougie, Olivier Boes
2016	J	`jnl`	Phylogenetic incongruence through the lens of Monadic Second Order logic. J. Graph Algorithms Appl. Steven Kelk, Leo van Iersel, Céline Scornavacca, Mathias Weller
2016	J	`jnl`	Satisfying ternary permutation constraints by multiple linear orders or phylogenetic trees. Theor. Comput. Sci. Leo van Iersel, Steven Kelk, Nela Lekic, Simone Linz
2015	J	`jnl`	On Computing the Maximum Parsimony Score of a Phylogenetic Network. SIAM J. Discret. Math. Mareike Fischer, Leo van Iersel, Steven Kelk, Céline Scornavacca
2015	J	`jnl`	Phylogenetic incongruence through the lens of Monadic Second Order logic. CoRR Steven Kelk, Leo van Iersel, Céline Scornavacca
2015	J	`jnl`	WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads. J. Comput. Biol. Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth
2014	J	`jnl`	A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees. BMC Bioinform. Leo van Iersel, Steven Kelk, Nela Lekic, Céline Scornavacca
2014	J	`jnl`	Approximation Algorithms for Nonbinary Agreement Forests. SIAM J. Discret. Math. Leo van Iersel, Steven Kelk, Nela Lekic, Leen Stougie
2014	J	`jnl`	Hybridization Number on Three Trees. CoRR Leo van Iersel, Steven Kelk, Nela Lekic, Chris Whidden, Norbert Zeh
2014	B	`conf`	Kernelizations for the Hybridization Number Problem on Multiple Nonbinary Trees. WG Leo van Iersel, Steven Kelk
2014	J	`jnl`	Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets. CoRR Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu
2014	J	`jnl`	Satisfying ternary permutation constraints by multiple linear orders or phylogenetic trees. CoRR Leo van Iersel, Steven Kelk, Nela Lekic, Simone Linz
2014	J	`jnl`	The agreement problem for unrooted phylogenetic trees is FPT. J. Graph Algorithms Appl. Céline Scornavacca, Leo van Iersel, Steven Kelk, David Bryant
2014	B	`conf`	WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads. RECOMB Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth
2013	J	`jnl`	A quadratic kernel for computing the hybridization number of multiple trees. Inf. Process. Lett. Leo van Iersel, Simone Linz
2013	J	`jnl`	Kernelizations for the hybridization number problem on multiple nonbinary trees. CoRR Leo van Iersel, Steven Kelk
2012	C	`conf`	A Practical Approximation Algorithm for Solving Massive Instances of Hybridization Number. WABI Leo van Iersel, Steven Kelk, Nela Lekic, Céline Scornavacca
2012	J	`jnl`	Computing nonbinary agreement forests CoRR Leo van Iersel, Steven Kelk, Nela Lekic, Leen Stougie
2012	J	`jnl`	Cycle Killer...Qu'est-ce que c'est? On the Comparative Approximability of Hybridization Number and Directed Feedback Vertex Set. SIAM J. Discret. Math. Steven Kelk, Leo van Iersel, Nela Lekic, Simone Linz, Céline Scornavacca, Leen Stougie
2012	J	`jnl`	Every ternary permutation constraint satisfaction problem parameterized above average has a kernel with a quadratic number of variables. J. Comput. Syst. Sci. Gregory Z. Gutin, Leo van Iersel, Matthias Mnich, Anders Yeo
2012	J	`jnl`	On the Elusiveness of Clusters. IEEE ACM Trans. Comput. Biol. Bioinform. Steven Kelk, Céline Scornavacca, Leo van Iersel
2011	J	`jnl`	A Practical Algorithm for Reconstructing Level-1 Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Katharina T. Huber, Leo van Iersel, Steven Kelk, Radoslaw Suchecki
2011	J	`jnl`	Constructing the Simplest Possible Phylogenetic Network from Triplets. Algorithmica Leo van Iersel, Steven Kelk
2011	J	`jnl`	Cycle killer... qu'est-ce que c'est? On the comparative approximability of hybridization number and directed feedback vertex set. CoRR Steven Kelk, Leo van Iersel, Nela Lekic, Simone Linz, Céline Scornavacca, Leen Stougie
2011	J	`jnl`	On the elusiveness of clusters CoRR Steven Kelk, Céline Scornavacca, Leo van Iersel
2010	J	`jnl`	All Ternary Permutation Constraint Satisfaction Problems Parameterized Above Average Have Polynomial Kernels CoRR Gregory Z. Gutin, Leo van Iersel, Matthias Mnich, Anders Yeo
2010	—	`conf`	All Ternary Permutation Constraint Satisfaction Problems Parameterized above Average Have Kernels with Quadratic Numbers of Variables. ESA (1) Gregory Z. Gutin, Leo van Iersel, Matthias Mnich, Anders Yeo
2010	J	`jnl`	Locating a tree in a phylogenetic network CoRR Leo van Iersel, Charles Semple, Mike A. Steel
2010	J	`jnl`	Locating a tree in a phylogenetic network. Inf. Process. Lett. Leo van Iersel, Charles Semple, Mike A. Steel
2010	J	`jnl`	Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters. Bioinform. Leo van Iersel, Steven Kelk, Regula Rupp, Daniel H. Huson
2009	J	`jnl`	Constructing Level-2 Phylogenetic Networks from Triplets. IEEE ACM Trans. Comput. Biol. Bioinform. Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie, Ferry Hagen, Teun Boekhout
2009	J	`jnl`	Uniqueness, Intractability and Exact Algorithms: Reflections on Level-k Phylogenetic Networks. J. Bioinform. Comput. Biol. Leo van Iersel, Steven Kelk, Matthias Mnich
2008	B	`conf`	Constructing Level-2 Phylogenetic Networks from Triplets. RECOMB Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie, Ferry Hagen, Teun Boekhout
2008	B	`conf`	Constructing the Simplest Possible Phylogenetic Network from Triplets. ISAAC Leo van Iersel, Steven Kelk
2008	J	`jnl`	Shorelines of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems. IEEE ACM Trans. Comput. Biol. Bioinform. Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie
2007	—	`conf`	Prefix Reversals on Binary and Ternary Strings. AB Cor A. J. Hurkens, Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie, John Tromp
2007	J	`jnl`	Prefix Reversals on Binary and Ternary Strings. SIAM J. Discret. Math. Cor A. J. Hurkens, Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie, John Tromp
2007	J	`jnl`	The Complexity of the Single Individual SNP Haplotyping Problem. Algorithmica Rudi Cilibrasi, Leo van Iersel, Steven Kelk, John Tromp
2006	C	`conf`	Beaches of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems. WABI Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie
2005	C	`conf`	On the Complexity of Several Haplotyping Problems. WABI Rudi Cilibrasi, Leo van Iersel, Steven Kelk, John Tromp