Leo Lahti

41 papers B 2Journal 26Unranked 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
Elementary methods provide more replicable results in microbial differential abundance analysis.
Briefings Bioinform.
Juho Pelto, Kari Auranen, Janne V. Kujala, Leo Lahti
2025 J jnl
HoloFoodR: a statistical programming framework for holo-omics data integration workflows.
Bioinform.
Tuomas Borman, Artur Sannikov, Robert D. Finn, Morten Tønsberg Limborg, Alexander B. Rogers, Varsha Kale, Kati Hanhineva, Leo Lahti
2025 J jnl
Learning and teaching biological data science in the Bioconductor community.
PLoS Comput. Biol.
Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean R. Davis, Maria A. Doyle, Ludwig Geistlinger, Andrew R. Ghazi, Susan P. Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson
2025 J jnl
LimROTS: a hybrid method integrating empirical Bayes and reproducibility-optimized statistics for robust differential expression analysis.
Bioinform.
Ali Mostafa Anwar, Akewak Jeba, Leo Lahti, Eleanor Coffey
2025 J jnl
Multi-omics time-series analysis in microbiome research: a systematic review.
Briefings Bioinform.
Moiz Khan Sherwani, Matti O. Ruuskanen, Dylan Feldner-Busztin, Panos Firbas Nisantzis, Gergely Boza, Ágnes Móréh, Tuomas Borman, Pande Putu Erawijantari, István Scheuring, Shyam Gopalakrishnan, Leo Lahti
2025 J jnl
Validating and Extracting Information from National Identification Numbers in R: The Case of Finland and Sweden.
R J.
Pyry Kantanen, Erik Bülow, Aleksi Lahtinen, Måns Magnusson, Jussi Paananen, Leo Lahti
2024 J jnl
Algorithm 1047: FdeSolver, a Julia Package for Solving Fractional Differential Equations.
ACM Trans. Math. Softw.
Moein Khalighi, Giulio Benedetti, Leo Lahti
2024 J jnl
Learning and teaching biological data science in the Bioconductor community.
CoRR
Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean Davis, Maria A. Doyle, Susan P. Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson
2024 J jnl
iSEEtree: interactive explorer for hierarchical data.
CoRR
Giulio Benedetti, Ely Seraidarian, Theotime Pralas, Akewak Jeba, Tuomas Borman, Leo Lahti
2023 J jnl
Dealing with dimensionality: the application of machine learning to multi-omics data.
Bioinform.
Dylan Feldner-Busztin, Panos Firbas Nisantzis, Shelley Jane Edmunds, Gergely Boza, Fernando Racimo, Shyam Gopalakrishnan, Morten Tønsberg Limborg, Leo Lahti, Gonzalo G. de Polavieja
2023 J jnl
Fractional model of COVID-19 with pathogens as shedding effects.
CoRR
Faïçal Ndaïrou, Moein Khalighi, Leo Lahti
2022 J jnl
Enhancing biomarkers with co-abundance.
Nat. Comput. Sci.
Leo Lahti
2022 J jnl
FdeSolver: A Julia Package for Solving Fractional Differential Equations.
CoRR
Moein Khalighi, Giulio Benedetti, Leo Lahti
2022 — conf
Probabilistic Multivariate Early Warning Signals.
CMSB
Ville Laitinen, Leo Lahti
2022 J jnl
Quantifying the impact of ecological memory on the dynamics of interacting communities.
PLoS Comput. Biol.
Moein Khalighi, Guilhem Sommeria-Klein, Didier Gonze, Karoline Faust, Leo Lahti
2021 — conf
Probabilistic Analysis of Early Modern British Book Prices.
CHR
Iiro Tiihonen, Mikko Tolonen, Leo Lahti
2021 J jnl
Three-Species Lotka-Volterra Model with Respect to Caputo and Caputo-Fabrizio Fractional Operators.
Symmetry
Moein Khalighi, Leila Eftekhari, Soleiman Hosseinpour, Leo Lahti
2020 — conf
Book printing and the rise of the vernacular in Europe, 1500-1820.
DH
Jani Marjanen, Hege Roivainen, Leo Lahti, Mikko Tolonen
2020 — conf
Data-driven analysis of canonical works in early modern Britain.
DH
Mikko Tolonen, Mark J. Hill, Ali Ijaz, Ville Vaara, Leo Lahti
2020 — conf
Quantifying Bias and Uncertainty in Historical Data Collections with Probabilistic Programming.
CHR
Leo Lahti, Eetu Mäkelä, Mikko Tolonen
2020 — conf
Wrangling with Non-Standard Data.
DHN
Eetu Mäkelä, Krista Lagus, Leo Lahti, Tanja Säily, Mikko Tolonen, Mika Hämäläinen, Samuli Kaislaniemi, Terttu Nevalainen
2019 — conf
Interdisciplinary Collaboration in Studying Newspaper Materiality.
TwinTalks@DHN
Eetu Mäkelä, Mikko Tolonen, Jani Marjanen, Antti Kanner, Ville Vaara, Leo Lahti
2019 — conf
Reconstructing Intellectual Networks: From the ESTC's bibliographic metadata to historical material.
DHN
Mark J. Hill, Ville Vaara, Tanja Säily, Leo Lahti, Mikko Tolonen
2019 — conf
Scaling Up Bibliographic Data Science.
DHN
Mikko Tolonen, Jani Marjanen, Hege Roivainen, Leo Lahti
2018 B conf
A Hierarchical Ornstein-Uhlenbeck Model for Stochastic Time Series Analysis.
IDA
Ville Laitinen, Leo Lahti
2018 B conf
Open Data Science.
IDA
Leo Lahti
2017 J jnl
Linking Statistical and Ecological Theory: Hubbell's Unified Neutral Theory of Biodiversity as a Hierarchical Dirichlet Process.
Proc. IEEE
Keith Harris, Todd L. Parsons, Umer Zeeshan Ijaz, Leo Lahti, Ian H. Holmes, Christopher Quince
2017 J jnl
Retrieval and Analysis of Eurostat Open Data with the eurostat Package.
R J.
Leo Lahti, Janne Huovari, Markus Kainu, Przemyslaw Biecek
2016 — conf
Printing in a Periphery: a Quantitative Study of Finnish Knowledge Production, 1640-1828.
DH
Mikko Tolonen, Niko Ilomäki, Hege Roivainen, Leo Lahti
2015 — conf
Beyond open access: the changing culture of producing and disseminating scientific knowledge.
MindTrek
Heidi Laine, Leo Lahti, Anne Lehto, Samuli Ollila, Markus Miettinen
2013 J jnl
Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review.
Briefings Bioinform.
Leo Lahti, Martin Schäfer, Hans-Ulrich Klein, Silvio Bicciato, Martin Dugas
2012 J jnl
Fully scalable online-preprocessing algorithm for short oligonucleotide microarray atlases
CoRR
Leo Lahti, Aurora Torrente, Laura Elo, Alvis Brazma, Johan Rung
2012 J jnl
Global modeling of transcriptional responses in interaction networks
CoRR
Leo Lahti, Juha E. A. Knuuttila, Samuel Kaski
2011 J jnl
A brief overview on the BioPAX and SBML standards for formal presentation of complex biological knowledge
CoRR
Leo Lahti
2011 J jnl
Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review
CoRR
Leo Lahti, Martin Schäfer, Hans-Ulrich Klein, Silvio Bicciato, Martin Dugas
2011 J jnl
Probabilistic Analysis of Probe Reliability in Differential Gene Expression Studies with Short Oligonucleotide Arrays.
IEEE ACM Trans. Comput. Biol. Bioinform.
Leo Lahti, Laura Elo, Tero Aittokallio, Samuel Kaski
2011 J jnl
Probabilistic analysis of the human transcriptome with side information
CoRR
Leo Lahti
2010 J jnl
Global modeling of transcriptional responses in interaction networks.
Bioinform.
Leo Lahti, Juha E. A. Knuuttila, Samuel Kaski
2010 — —
Probabilistic analysis of the human transcriptome with side information.
Leo Lahti
2005 J jnl
Associative Clustering for Exploring Dependencies between Functional Genomics Data Sets.
IEEE ACM Trans. Comput. Biol. Bioinform.
Samuel Kaski, Janne Nikkilä, Janne Sinkkonen, Leo Lahti, Juha E. A. Knuuttila, Christophe Roos
2004 — conf
Associative Clustering.
ECML
Janne Sinkkonen, Janne Nikkilä, Leo Lahti, Samuel Kaski