Lenore J. Cowen

36 papers A 1B 2Misc 3Journal 20Unranked 8
YearRankTypeTitle / Venue / Authors
2022 — conf
Combining spectral clustering and large cut algorithms to find compensatory functional modules from yeast physical and genetic interaction data with GLASS.
BCB
Blessing Kolawole, Lenore J. Cowen
2022 J jnl
GLIDER: function prediction from GLIDE-based neighborhoods.
Bioinform.
Kapil Devkota, Henri Schmidt, Matthew Werenski, James M. Murphy, Mert Erden, Victor Arsenescu, Lenore J. Cowen
2022 J jnl
MEDFORD: A human and machine readable metadata markup language.
CoRR
Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore J. Cowen, Alva L. Couch, Noah M. Daniels
2022 J jnl
Majority Vote Cascading: A Semi-Supervised Framework for Improving Protein Function Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
John Lazarsfeld, Jonathan Rodríguez, Mert Erden, Yuelin Liu, Lenore J. Cowen
2022 — conf
Neighborhood embedding and re-ranking of disease genes with ADAGIO.
BCB
Mert Erden, Megan Gelement, Sarrah Hakimjee, Kyla Levin, Mary-Joy Sidhom, Kapil Devkota, Lenore J. Cowen
2021 Misc conf
Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience.
PSB
Lenore J. Cowen, Judith Klein-Seetharaman, Hollie Putnam
2021 — conf
Random-Walk Based Approximate k-Nearest Neighbors Algorithm for Diffusion State Distance.
LSSC
Lenore J. Cowen, Xiaozhe Hu, Junyuan Lin, Yue Shen, Kaiyi Wu
2020 J jnl
GLIDE: combining local methods and diffusion state embeddings to predict missing interactions in biological networks.
Bioinform.
Kapil Devkota, James M. Murphy, Lenore J. Cowen
2020 J jnl
Preface Special Issue: RECOMB 2019.
J. Comput. Biol.
Lenore J. Cowen
2019 — conf
Majority Vote Cascading: A Semi-Supervised Framework for Improving Protein Function Prediction.
BCB
John Lazarsfeld, Jonathan Rodríguez, Mert Erden, Yuelin Liu, Lenore J. Cowen
2019 B ed.
Research in Computational Molecular Biology - 23rd Annual International Conference, RECOMB 2019, Washington, DC, USA, May 5-8, 2019, Proceedings
RECOMB
Lenore J. Cowen
2018 J jnl
Computing the diffusion state distance on graphs via algebraic multigrid and random projections.
Numer. Linear Algebra Appl.
Junyuan Lin, Lenore J. Cowen, Benjamin J. Hescott, Xiaozhe Hu
2017 — conf
Detangling PPI Networks to Uncover Functionally Meaningful Clusters.
BCB
Sarah Hall-Swan, Jake Crawford, Rebecca Newman, Lenore J. Cowen
2017 — ed.
Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2017, Boston, MA, USA, August 20-23, 2017
BCB
Nurit Haspel, Lenore J. Cowen, Amarda Shehu, Tamer Kahveci, Giuseppe Pozzi
2017 Misc conf
When should we NOT transfer functional annotation between sequence paralogs?
PSB
Mengfei Cao, Lenore J. Cowen
2016 — ch.
Packet Routing.
Encyclopedia of Algorithms
Lenore J. Cowen
2015 J jnl
MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search.
IEEE ACM Trans. Comput. Biol. Bioinform.
Noah M. Daniels, Andrew Gallant, Norman Ramsey, Lenore J. Cowen
2014 J jnl
New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence.
Bioinform.
Mengfei Cao, Christopher M. Pietras, Xian Feng, Kathryn J. Doroschak, Thomas Schaffner, Jisoo Park, Hao Zhang, Lenore J. Cowen, Benjamin J. Hescott
2013 J jnl
Compressive genomics for protein databases.
Bioinform.
Noah M. Daniels, Andrew Gallant, Jian Peng, Lenore J. Cowen, Michael Baym, Bonnie Berger
2013 J jnl
Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data.
BMC Bioinform.
Andrew Gallant, Mark D. M. Leiserson, Maxim Kachalov, Lenore J. Cowen, Benjamin J. Hescott
2013 — conf
MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search.
BCB
Noah M. Daniels, Andrew Gallant, Norman Ramsey, Lenore J. Cowen
2012 J jnl
Formatt: Correcting Protein Multiple Structural Alignments by Incorporating Sequence Alignment.
BMC Bioinform.
Noah M. Daniels, Shilpa Nadimpalli, Lenore J. Cowen
2012 — conf
Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data.
BCB
Andrew Gallant, Mark D. M. Leiserson, Maxim Kachalov, Lenore J. Cowen, Benjamin J. Hescott
2012 J jnl
Molli: Interactive Visualization for Exploratory Protein Analysis.
IEEE Computer Graphics and Applications
Sara L. Su, Connor Gramazio, Daniela Extrum-Fernandez, Caitlin Crumm, Lenore J. Cowen, Matthew Menke, Megan Strait
2012 — conf
Remote homology detection on alpha-structural proteins using simulated evolution.
BCB
Mengfei Cao, Lenore J. Cowen
2012 J jnl
SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone.
Bioinform.
Noah M. Daniels, Raghavendra Hosur, Bonnie Berger, Lenore J. Cowen
2011 B conf
Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut.
RECOMB
Mark D. M. Leiserson, Diana Tatar, Lenore J. Cowen, Benjamin J. Hescott
2011 J jnl
Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut.
J. Comput. Biol.
Mark D. M. Leiserson, Diana Tatar, Lenore J. Cowen, Benjamin J. Hescott
2010 J jnl
Evaluating Between-Pathway Models with Expression Data.
J. Comput. Biol.
Benjamin J. Hescott, Mark D. M. Leiserson, Lenore J. Cowen, Donna K. Slonim
2009 J jnl
BETASCAN: Probable β-amyloids Identified by Pairwise Probabilistic Analysis.
PLoS Comput. Biol.
Allen W. Bryan Jr., Matthew Menke, Lenore J. Cowen, Susan Lindquist, Bonnie Berger
2008 J jnl
Totally Greedy Coin Sets and Greedy Obstructions.
Electron. J. Comb.
Lenore J. Cowen, Robert Cowen, Arthur Steinberg
2006 A conf
Compact Routing on Power Law Graphs with Additive Stretch.
ALENEX
Arthur Brady, Lenore J. Cowen
1996 J jnl
Hypercube sandwich approach to conferencing.
J. Supercomput.
Joanne F. Houlahan, Lenore J. Cowen, Gerald M. Masson
1995 J jnl
Asymptotic enumeration of full graphs.
J. Graph Theory
Daniel J. Kleitman, Fernando R. Lasaga, Lenore J. Cowen
1995 Misc conf
Hypercube Sandwich Approach to Conferencing.
PDPTA
Joanne F. Houlahan, Lenore J. Cowen, Gerald M. Masson
1986 J jnl
Defective colorings of graphs in surfaces: Partitions into subgraphs of bounded valency.
J. Graph Theory
Lenore J. Cowen, Robert Cowen, Douglas R. Woodall