Lenore Cowen - RankMe

75 papers A* 13A 1B 10Journal 36Unranked 13

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	MEDFORD in a Box: Improvements and Future Directions for a Metadata Description Language. CoRR Polina Shpilker, Benjamin Stubbs, Michael Sayers, Yumin Lee, Lenore Cowen, Donna K. Slonim, Shaun Wallace, Alva L. Couch, Noah M. Daniels
2025	B	`conf`	Decoding the Functional Interactome of Non-model Organisms with PHILHARMONIC. RECOMB Samuel Sledzieski, Charlotte Versavel, Rohit Singh, Faith Ocitti, Kapil Devkota, Lokender Kumar, Polina Shpilker, Liza Roger, Jinkyu Yang, Nastassja Lewinski, Hollie Putnam, Bonnie Berger, Judith Klein-Seetharaman, Lenore Cowen
2025	B	`conf`	Learning a CoNCISE Language for Small-Molecule Binding. RECOMB Mert Erden, Kapil Devkota, Lia Varghese, Lenore Cowen, Rohit Singh
2025	J	`jnl`	Memory-efficient, accelerated protein interaction inference with blocked, multi-GPU D-SCRIPT. Bioinform. Daniel E. Schäffer, Samuel Sledzieski, Lenore Cowen, Bonnie Berger
2025	J	`jnl`	Partial VOROS: A Cost-aware Performance Metric for Binary Classifiers with Precision and Capacity Constraints. CoRR Christopher Ratigan, Kyle Heuton, Carissa Wang, Lenore Cowen, Michael C. Hughes
2025	—	`conf`	RDS: A ReCIPE for Overlapping Community Detection in Biological Networks. BCB Faith Abiria Ocitti, Charlotte Versavel, Samuel Sledzieski, Lenore Cowen
2025	A*	`conf`	The VOROS: Lifting ROC Curves to 3D to Summarize Unbalanced Classifier Performance. AAAI Christopher Ratigan, Lenore Cowen
2024	J	`jnl`	Approximate IsoRank for Scalable and Functionally Meaningful Cross-Species Alignments of Protein Interaction Networks. J. Comput. Biol. Kapil Devkota, Anselm Blumer, Xiaozhe Hu, Lenore Cowen
2024	—	`conf`	Cross-Referencing Metadata Through an Extension of the MEDFORD Language. MTSR Polina Shpilker, Benjamin Stubbs, Michael Sayers, Lenore Cowen, Shaun Wallace, Alva L. Couch, Noah M. Daniels
2024	B	`conf`	Fast Approximate IsoRank for Scalable Global Alignment of Biological Networks. RECOMB Kapil Devkota, Anselm Blumer, Xiaozhe Hu, Lenore Cowen
2024	B	`conf`	Identifying Rapidly Evolving Genes in Coral Species to Better Understand Coral Bleaching. IEEE Big Data Adrita Samanta, Lenore Cowen
2024	J	`jnl`	Quantifying Media Influence on Covid-19 Mask-Wearing Beliefs. CoRR Nicholas Rabb, Nitya Nadgir, Jan P. de Ruiter, Lenore Cowen
2024	J	`jnl`	The VOROS: Lifting ROC curves to 3D. CoRR Christopher Ratigan, Lenore Cowen
2023	—	`conf`	Context-Sensitive Editing for the MEDFORD Metadata Language. MTSR Liam Strand, Andrew Powers, Polina Shpilker, Lenore Cowen, Alva L. Couch, Noah M. Daniels
2023	J	`jnl`	Investigating the effect of selective exposure, audience fragmentation, and echo-chambers on polarization in dynamic media ecosystems. Appl. Netw. Sci. Nicholas Rabb, Lenore Cowen, Jan P. de Ruiter
2023	—	`ed.`	SIAM Conference on Applied and Computational Discrete Algorithms, ACDA 2023, Seattle, WA, USA, May 31 - June 2, 2023 ACDA Jonathan W. Berry, David B. Shmoys, Lenore Cowen, Uwe Naumann
2023	J	`jnl`	TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions. Bioinform. Samuel Sledzieski, Kapil Devkota, Rohit Singh, Lenore Cowen, Bonnie Berger
2022	—	`conf`	Cognitive Cascades within Media Ecosystems: Simulating Fragmentation, Selective Exposure and Media Tactics to Investigate Polarization. COMPLEX NETWORKS (1) Nicholas Rabb, Lenore Cowen
2022	—	`conf`	Embodied Notes: A Cognitive Support Tool For Remote Scientific Collaboration in VR. CHI Extended Abstracts Monsurat Olaosebikan, Claudia Aranda Barrios, Lenore Cowen, Orit Shaer
2022	B	`conf`	Identifying Cognitive and Creative Support Needs for Remote Scientific Collaboration using VR: Practices, Affordances, and Design Implications. Creativity & Cognition Monsurat Olaosebikan, Claudia Aranda Barrios, Blessing Kolawole, Lenore Cowen, Orit Shaer
2022	J	`jnl`	MEDFORD: A human- and machine-readable metadata markup language. Database J. Biol. Databases Curation Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore Cowen, Alva L. Couch, Noah M. Daniels
2022	J	`jnl`	Topsy-Turvy: integrating a global view into sequence-based PPI prediction. Bioinform. Rohit Singh, Kapil Devkota, Samuel Sledzieski, Bonnie Berger, Lenore Cowen
2021	J	`jnl`	Cognitive Contagion: How to model (and potentially counter) the spread of fake news. CoRR Nicholas Rabb, Lenore Cowen, Jan P. de Ruiter, Matthias Scheutz
2021	J	`jnl`	Diffusion State Distances: Multitemporal Analysis, Fast Algorithms, and Applications to Biological Networks. SIAM J. Math. Data Sci. Lenore Cowen, Kapil Devkota, Xiaozhe Hu, James M. Murphy, Kaiyi Wu
2021	—	`conf`	MEtaData Format for Open Reef Data (MEDFORD). MTSR Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore Cowen, Alva L. Couch, Noah M. Daniels
2020	J	`jnl`	Diffusion State Distances: Multitemporal Analysis, Fast Algorithms, and Applications to Biological Networks. CoRR Lenore Cowen, Kapil Devkota, Xiaozhe Hu, James M. Murphy, Kaiyi Wu
2018	—	`conf`	Highlights Talks at ACM BCB 2018. BCB Lenore Cowen, Xiaoqian Jiang
2011	—	`conf`	Formatt: correcting protein multiple structural alignments by sequence peeking. BCB Shilpa Nadimpalli, Noah M. Daniels, Lenore Cowen
2010	J	`jnl`	Markov random fields reveal an N-terminal double beta-propeller motif as part of a bacterial hybrid two-component sensor system. Proc. Natl. Acad. Sci. USA Matthew Menke, Bonnie Berger, Lenore Cowen
2010	J	`jnl`	Recognition of beta-structural motifs using hidden Markov models trained with simulated evolution. Bioinform. Anoop Kumar, Lenore Cowen
2010	—	`conf`	Touring Protein Space with Matt. ISBRA Noah M. Daniels, Anoop Kumar, Lenore Cowen, Matthew Menke
2009	J	`jnl`	Augmented training of hidden Markov models to recognize remote homologs via simulated evolution. Bioinform. Anoop Kumar, Lenore Cowen
2009	B	`conf`	Evaluating Between-Pathway Models with Expression Data. RECOMB Benjamin J. Hescott, Mark D. M. Leiserson, Lenore Cowen, Donna K. Slonim
2008	—	`conf`	A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole Genomes. ISBRA Xintao Wei, Lenore Cowen, Carla E. Brodley, Arthur Brady, D. Sculley, Donna K. Slonim
2008	J	`jnl`	Compact roundtrip routing with topology-independent node names. J. Comput. Syst. Sci. Marta Arias, Lenore Cowen, Kofi A. Laing
2008	J	`jnl`	Matt: Local Flexibility Aids Protein Multiple Structure Alignment. PLoS Comput. Biol. Matthew Menke, Bonnie Berger, Lenore Cowen
2008	—	`ch.`	Packet Routing. Encyclopedia of Algorithms Lenore Cowen
2006	J	`jnl`	Compact Routing with Name Independence. SIAM J. Discret. Math. Marta Arias, Lenore Cowen, Kofi A. Laing, Rajmohan Rajaraman, Orjeta Taka
2006	B	`conf`	Compact routing with additive stretch using distance labelings. SPAA Arthur Brady, Lenore Cowen
2006	A	`conf`	Exact Distance Labelings Yield Additive-Stretch Compact Routing Schemes. DISC Arthur Brady, Lenore Cowen
2005	J	`jnl`	Wrap-and-Pack: A New Paradigm for Beta Structural Motif Recognition with Application to Recognizing Beta Trefoils. J. Comput. Biol. Matthew Menke, Jonathan King, Bonnie Berger, Lenore Cowen
2004	J	`jnl`	Approximation Algorithms for the Class Cover Problem. Ann. Math. Artif. Intell. Adam Cannon, Lenore Cowen
2004	J	`jnl`	Compact roundtrip routing in directed networks. J. Algorithms Lenore Cowen, Christopher G. Wagner
2004	J	`jnl`	The distinguishing number of the hypercube. Discret. Math. Bill Bogstad, Lenore Cowen
2004	B	`conf`	Wrap-and-pack: a new paradigm for beta structural motif recognition with application to recognizing beta trefoils. RECOMB Matthew Menke, Eben Scanlon, Jonathan King, Bonnie Berger, Lenore Cowen
2003	A*	`conf`	Compact roundtrip routing with topology-independent node names. PODC Marta Arias, Lenore Cowen, Kofi A. Laing
2003	B	`conf`	Compact routing with name independence. SPAA Marta Arias, Lenore Cowen, Kofi A. Laing, Rajmohan Rajaraman, Orjeta Taka
2002	J	`jnl`	Foreword. Discret. Math. Lenore Cowen, Jerrold R. Griggs, Douglas B. West
2002	J	`jnl`	Guest Editor's Foreword. J. Comput. Syst. Sci. Lenore Cowen, Ronald Fagin, Joe Kilian, Jon M. Kleinberg
2002	J	`jnl`	Predicting the Beta-Helix Fold from Protein Sequence Data. J. Comput. Biol. Lenore Cowen, Phil Bradley, Matthew Menke, Jonathan King, Bonnie Berger
2001	J	`jnl`	Compact Routing with Minimum Stretch. J. Algorithms Lenore Cowen
2001	B	`conf`	Predicting the beta-helix fold from protein sequence data. RECOMB Phil Bradley, Lenore Cowen, Matthew Menke, Jonathan King, Bonnie Berger
2000	—	`conf`	Approximation Algorithms for the Class Cover Problem. AI&M Adam Cannon, Lenore Cowen
2000	A*	`conf`	Compact roundtrip routing in directed networks (extended abstract). PODC Lenore Cowen, Christopher G. Wagner
1999	A*	`conf`	Compact Roundtrip Routing for Digraphs. SODA Lenore Cowen, Christopher G. Wagner
1999	A*	`conf`	Compact Routing with Minimum Stretch. SODA Lenore Cowen
1999	J	`jnl`	On the local distinguishing numbers of cycles. Discret. Math. C. T. Cheng, Lenore Cowen
1998	J	`jnl`	A Formal Framework for Evaluating Heuristic Programs. Ann. Math. Artif. Intell. Lenore Cowen, Joan Feigenbaum, Sampath Kannan
1998	J	`jnl`	Near-Linear Time Construction of Sparse Neighborhood Covers. SIAM J. Comput. Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg
1997	A*	`conf`	Coloring with Defect. SODA Lenore Cowen, Wayne Goddard, C. Esther Jesurum
1997	J	`jnl`	Defective coloring revisited. J. Graph Theory Lenore Cowen, Wayne Goddard, C. Esther Jesurum
1997	J	`jnl`	The Offset Problem. Comb. Probab. Comput. Lenore Cowen, Rudolf Mathar
1996	A*	`conf`	A Formal Framework for Evaluating Heuristic Programs. ICALP Lenore Cowen, Joan Feigenbaum, Sampath Kannan
1996	J	`jnl`	Fast Distributed Network Decompositions and Covers. J. Parallel Distributed Comput. Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg
1996	A*	`conf`	The Offset Problem (Abstract). PODC Lenore Cowen, Rudolf Mathar
1995	J	`jnl`	Scheduling with Concurrency-Based Constraints. J. Algorithms Bonnie Berger, Lenore Cowen
1994	A*	`conf`	Efficient asynchronous distributed symmetry breaking. STOC Baruch Awerbuch, Lenore Cowen, Mark A. Smith
1994	J	`jnl`	Low-Diameter Graph Decomposition Is in NC. Random Struct. Algorithms Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg
1993	J	`jnl`	Concurrence Probabilities for a Locally Slotted Packet Radio Network by Combinatorial Methods. Perform. Evaluation Rudolf Mathar, Lenore Cowen
1993	A*	`conf`	Near-Linear Cost Sequential and Distribured Constructions of Sparse Neighborhood Covers FOCS Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg
1992	A*	`conf`	Fast Network Decomposition (Extended Abstract). PODC Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg
1992	—	`conf`	Low-Diameter Graph Decomposition is in NC. SWAT Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg
1991	A*	`conf`	Complexity Results and Algorithms for { <, <=, = }-Constrained Scheduling. SODA Bonnie Berger, Lenore Cowen
1989	A*	`conf`	On the Structure of Secret Key Exchange Protocols. CRYPTO Mihir Bellare, Lenore Cowen, Shafi Goldwasser
1989	—	`conf`	On the Structure of Secret Key Exchange Protocols. Distributed Computing And Cryptography Mihir Bellare, Lenore Cowen, Shafi Goldwasser