Lennart Nilsson

12 papers Journal 11Unranked 1

Year	Rank	Type	Title / Venue / Authors
2018	J	`jnl`	Modeling pK Shift in DNA Triplexes Containing Locked Nucleic Acids. J. Chem. Inf. Model. Yossa Dwi Hartono, You Xu, Andrey Karshikoff, Lennart Nilsson, Alessandra Villa
2017	J	`jnl`	The free energy of locking a ring: Changing a deoxyribonucleoside to a locked nucleic acid. J. Comput. Chem. You Xu, Alessandra Villa, Lennart Nilsson
2016	J	`jnl`	Additive CHARMM force field for naturally occurring modified ribonucleotides. J. Comput. Chem. You Xu, Kenno Vanommeslaeghe, Alexey Aleksandrov, Alexander D. MacKerell Jr., Lennart Nilsson
2014	J	`jnl`	Conformational Preferences of Modified Uridines: Comparison of AMBER Derived Force Fields. J. Chem. Inf. Model. Indrajit Deb, Joanna Sarzynska, Lennart Nilsson, Ansuman Lahiri
2011	J	`jnl`	Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA. J. Comput. Chem. Elizabeth J. Denning, U. Deva Priyakumar, Lennart Nilsson, Alexander D. MacKerell Jr.
2009	J	`jnl`	CHARMM: The biomolecular simulation program. J. Comput. Chem. Bernard R. Brooks, Charles L. Brooks III, Alexander D. MacKerell Jr., Lennart Nilsson, Robert J. Petrella, Benoît Roux, Y. Won, G. Archontis, Christian Bartels, Stefan Boresch, Amedeo Caflisch, Leo S. D. Caves, Qiang Cui, Aaron R. Dinner, Michael Feig, S. Fischer, Jiali Gao, Milan Hodoscek, Wonpil Im, Krzysztof Kuczera, Themis Lazaridis, J. Ma, Victor Ovchinnikov, Emanuele Paci, Richard W. Pastor, C. B. Post, J. Z. Pu, Michael Schaefer, Bruce Tidor, Richard M. Venable, H. Lee Woodcock III, X. Wu, W. Yang, Darrin M. York, Martin Karplus
2009	J	`jnl`	Efficient table lookup without inverse square roots for calculation of pair wise atomic interactions in classical simulations. J. Comput. Chem. Lennart Nilsson
2009	J	`jnl`	How Thioredoxin Dissociates Its Mixed Disulfide. PLoS Comput. Biol. Goedele Roos, Nicolas Foloppe, Koen Van Laer, Lode Wyns, Lennart Nilsson, Paul Geerlings, Joris Messens
2006	—	`conf`	A Highly Efficient PARA Yaoquan Tu, Lennart Nilsson, Aatto Laaksonen
2003	J	`jnl`	Improved precision and efficiency of free energy calculations for small systems using lambda-scaled atomic masses and separating conformational and transformational sampling. J. Comput. Chem. Peter Carlsson, Lennart Nilsson
2002	J	`jnl`	Structure and dynamics of liquid water with different long-range interaction truncation and temperature control methods in molecular dynamics simulations. J. Comput. Chem. Pekka Mark, Lennart Nilsson
1999	J	`jnl`	Some practical aspects of free energy calculations from molecular dynamics simulation. J. Comput. Chem. Srikanta Sen, Lennart Nilsson