Leming Shi

16 papers Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
A Telomere-to-telomere Diploid Reference Genome and Centromere Structure of the Chinese Quartet.
Genom. Proteom. Bioinform.
Bo Wang, Peng Jia, Stephen J. Bush, Xia Wang, Yi Yang, Yu Zhang, Shijie Wang, Xiaofei Yang, Pengyu Zhang, Yuanting Zheng, Leming Shi, Lianhua Dong, Kai Ye
2025 J jnl
Evaluative Methodology for HRD Testing: Development of Standard Tools for Consistency Assessment.
Genom. Proteom. Bioinform.
Zheng Jia, Yaqing Liu, Shoufang Qu, Wenbin Li, Lin Gao, Lin Dong, Yun Xing, Yadi Cheng, Huan Fang, Yuting Yi, Yuxing Chu, Chao Zhang, Yanming Xie, Chunli Wang, Zhe Li, Zhihong Zhang, Zhipeng Xu, Yang Wang, Wenxin Zhang, Xiaoping Gu, Shuang Yang, Jinghua Li, Liangshen Wei, Yuanting Zheng, Guohui Ding, Leming Shi, Xin Yi, Jianming Ying, Jie Huang
2023 J jnl
Patient Assessment and Therapy Planning Based on Homologous Recombination Repair Deficiency.
Genom. Proteom. Bioinform.
Wenbin Li, Lin Gao, Xin Yi, Shuangfeng Shi, Jie Huang, Leming Shi, Xiaoyan Zhou, Lingying Wu, Jianming Ying
2019 J jnl
Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38.
BMC Bioinform.
Bohu Pan, Rebecca Kusko, Wenming Xiao, Yuanting Zheng, Zhichao Liu, Chunlin Xiao, Sugunadevi Sakkiah, Wenjing Guo, Ping Gong, Chaoyang Zhang, Weigong Ge, Leming Shi, Weida Tong, Huixiao Hong
2019 J jnl
PreMedKB: an integrated precision medicine knowledgebase for interpreting relationships between diseases, genes, variants and drugs.
Nucleic Acids Res.
Ying Yu, Yunjin Wang, Zhaojie Xia, Xiangyu Zhang, Kailiang Jin, Jingcheng Yang, Luyao Ren, Zheng Zhou, Dong Yu, Tao Qing, Chengdong Zhang, Li Jin, Yuanting Zheng, Li Guo, Leming Shi
2019 J jnl
Similarities and differences between variants called with human reference genome HG19 or HG38.
BMC Bioinform.
Bohu Pan, Rebecca Kusko, Wenming Xiao, Yuanting Zheng, Zhichao Liu, Chunlin Xiao, Sugunadevi Sakkiah, Wenjing Guo, Ping Gong, Chaoyang Zhang, Weigong Ge, Leming Shi, Weida Tong, Huixiao Hong
2015 J jnl
A multi-omic analysis of human naïve CD4+ T cells.
BMC Syst. Biol.
Christopher J. Mitchell, Derese Getnet, Min Sik Kim, Srinivas Manda Srikanth, Praveen Kumar, Tai-Chung Huang, Sneha M. Pinto, Nirujogi Raja Sekhar, Mio Iwasaki, Patrick G. Shaw, Xinyan Wu, Jun Zhong, Raghothama Chaerkady, Arivusudar Marimuthu, Babylakshmi Muthusamy, Nandini A. Sahasrabuddhe, Rajesh Raju, Caitlyn Bowman, Ludmila V. Danilova, Jevon Cutler, Dhanashree S. Kelkar, Charles G. Drake, T. S. Keshava Prasad, Luigi Marchionni, Peter N. Murakami, Alan F. Scott, Leming Shi, Jean Thierry-Mieg, Danielle Thierry-Mieg, Rafael A. Irizarry, Leslie Cope, Yasushi Ishihama, Charles Wang, Harsha Gowda, Akhilesh Pandey
2015 J jnl
Understanding and predicting binding between human leukocyte antigens (HLAs) and peptides by network analysis.
BMC Bioinform.
Heng Luo, Hao Ye, Hui Wen Ng, Leming Shi, Weida Tong, William Mattes, Donna Mendrick, Huixiao Hong
2013 J jnl
Estimating relative noise to signal in DNA microarray data.
Int. J. Bioinform. Res. Appl.
Huixiao Hong, Qilong Hong, Jie Liu, Weida Tong, Leming Shi
2013 J jnl
Good practice guidelines for biomarker discovery from array data: a case study for breast cancer prognosis.
BMC Syst. Biol.
Jie Cheng, Joel Greshock, Leming Shi, Shu Zheng, Alan Menius, Kwan Lee
2012 — conf
An adaptive feature selection method for microarray data analysis.
BIBM
Jie Cheng, Joel Greshock, Leming Shi, Jeffery Painter, Xiwu Lin, Kwan Lee, Shu Zheng, Richard Wooster, Lajos Pusztai, Alan Menius
2011 J jnl
DRAR-CPI: a server for identifying drug repositioning potential and adverse drug reactions via the chemical-protein interactome.
Nucleic Acids Res.
Heng Luo, Jian Chen, Leming Shi, Mike Mikailov, Huang Zhu, Kejian Wang, Lin He, Lun Yang
2011 J jnl
Exploring Off-Targets and Off-Systems for Adverse Drug Reactions via Chemical-Protein Interactome - Clozapine-Induced Agranulocytosis as a Case Study.
PLoS Comput. Biol.
Lun Yang, Kejian Wang, Jian Chen, Anil G. Jegga, Heng Luo, Leming Shi, Chunling Wan, Xizhi Guo, Shengying Qin, Guang He, Guoyin Feng, Lin He
2010 J jnl
Evaluation of gene expression data generated from expired Affymetrix GeneChip
BMC Bioinform.
Zhining Wen, Charles Wang, Quan Shi, Ying Huang, Zhenqiang Su, Huixiao Hong, Weida Tong, Leming Shi
2010 J jnl
The EDKB: an established knowledge base for endocrine disrupting chemicals.
BMC Bioinform.
Don Ding, Lei Xu, Hong Fang, Huixiao Hong, Roger Perkins, Steve Harris, Edward D. Bearden, Leming Shi, Weida Tong
2008 J jnl
Mold
J. Chem. Inf. Model.
Huixiao Hong, Qian Xie, Weigong Ge, Feng Qian, Hong Fang, Leming Shi, Zhenqiang Su, Roger Perkins, Weida Tong