Leming M. Shi

23 papers Journal 21Unranked 1
YearRankTypeTitle / Venue / Authors
2011 J jnl
Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II project.
BMC Bioinform.
Minjun Chen, Leming M. Shi, Reagan J. Kelly, Roger Perkins, Hong Fang, Weida Tong
2011 — ch.
The MicroArray Quality Control (MAQC) Project and Cross-Platform Analysis of Microarray Data.
Handbook of Statistical Bioinformatics
Zhining Wen, Zhenqiang Su, Jie Liu, Baitang Ning, Lei Guo, Weida Tong, Leming M. Shi
2009 J jnl
Microarray platform consistency is revealed by biologically functional analysis of gene expression profiles.
BMC Bioinform.
Zhiguang Li, Zhenqiang Su, Zhining Wen, Leming M. Shi, Tao Chen
2009 J jnl
The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments.
J. Comput. Biol.
Huixiao Hong, Qilong Hong, Roger Perkins, Leming M. Shi, Hong Fang, Zhenqiang Su, Yvonne P. Dragan, James C. Fuscoe, Weida Tong
2008 J jnl
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.
BMC Bioinform.
Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong
2008 J jnl
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.
BMC Bioinform.
Leming M. Shi, Wendell D. Jones, Roderick V. Jensen, Stephen C. Harris, Roger Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan Cao, Tzu-Ming Chu, Patrick J. Collins, Xiao-hui Fan, Felix W. Frueh
2008 J jnl
Very Important Pool (VIP) genes - an application for microarray-based molecular signatures.
BMC Bioinform.
Zhenqiang Su, Huixiao Hong, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong
2006 J jnl
Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comfrey (
BMC Bioinform.
Nan Mei, Lei Guo, Lu Zhang, Leming M. Shi, Yongming Andrew Sun, Chris Fung, Carrie L. Moland, Stacey L. Dial, James C. Fuscoe, Tao Chen
2006 J jnl
Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor alpha agonists.
BMC Bioinform.
Lei Guo, Hong Fang, Jim Collins, Xiao-hui Fan, Stacey L. Dial, Alex Wong, Kshama Mehta, Ernice Blann, Leming M. Shi, Weida Tong, Yvonne P. Dragan
2006 J jnl
Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats.
BMC Bioinform.
Tao Chen, Lei Guo, Lu Zhang, Leming M. Shi, Hong Fang, Yongming Sun, James C. Fuscoe, Nan Mei
2006 J jnl
Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions.
BMC Bioinform.
Tao Han, Cathy D. Melvin, Leming M. Shi, William S. Branham, Carrie L. Moland, P. Scott Pine, Karol L. Thompson, James C. Fuscoe
2006 J jnl
Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmium.
Bioinform.
Yongxi Tan, Leming M. Shi, Saber M. Hussain, Jun Xu, Weida Tong, John M. Frazier, Charles Wang
2005 J jnl
A microarray study of MPP
BMC Bioinform.
Zengjun Xu, Tucker A. Patterson, Jonathan D. Wren, Tao Han, Leming M. Shi, Helen Duhart, Syed F. Ali, William Slikker Jr.
2005 J jnl
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.
BMC Bioinform.
Hong Fang, Weida Tong, Roger Perkins, Leming M. Shi, Huixiao Hong, X. Cao, Qian Xie, S. H. Yim, J. M. Ward, Henry C. Pitot, Yvonne P. Dragan
2005 J jnl
Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential.
BMC Bioinform.
Leming M. Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Z. Alex Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano
2005 J jnl
Microarray scanner calibration curves: characteristics and implications.
BMC Bioinform.
Leming M. Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K. Puri, Hong Fang, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, William S. Branham, James J. Chen, Z. Alex Xu, Stephen C. Harris, Huixiao Hong, Qian Xie, Roger Perkins, James C. Fuscoe
2005 J jnl
Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS).
BMC Bioinform.
Huixiao Hong, Yvonne P. Dragan, Joshua Epstein, Candee Teitel, Bangzheng Chen, Qian Xie, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong
2004 J jnl
Eigenvalue Analysis of Peroxisome Proliferator-Activated Receptor gamma Agonists.
J. Chem. Inf. Model.
Chenzhong Liao, Aihua Xie, Leming M. Shi, Jiaju Zhou, Xianping Lu
2004 J jnl
Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models.
Comput. Biol. Chem.
Yongxi Tan, Leming M. Shi, Weida Tong, G. T. Gene Hwang, Charles Wang
2001 J jnl
QSAR Models Using a Large Diverse Set of Estrogens.
J. Chem. Inf. Comput. Sci.
Leming M. Shi, Hong Fang, Weida Tong, Jie Wu, Roger Perkins, Robert M. Blair, William S. Branham, Stacey L. Dial, Carrie L. Moland, Daniel M. Sheehan
2000 J jnl
Mining and Visualizing Large Anticancer Drug Discovery Databases.
J. Chem. Inf. Comput. Sci.
Leming M. Shi, Yi Fan, Jae K. Lee, Mark Waltham, Darren T. Andrews, Uwe Scherf, Kenneth D. Paull, John N. Weinstein
1998 J jnl
Mining the NCI Anticancer Drug Discovery Databases: Genetic Function Approximation for the QSAR Study of Anticancer Ellipticine Analogues.
J. Chem. Inf. Comput. Sci.
Leming M. Shi, Yi Fan, Timothy G. Myers, Patrick M. O'Connor, Kenneth D. Paull, Stephen H. Friend, John N. Weinstein
1997 — conf
Genetic function approximation in the molecular pharmacology of cancer.
ICNN
Leming M. Shi, Yi Fan, Timothy G. Myers, John N. Weinstein