Lei Wei

26 papers B 2Journal 23Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Benchmarking AI scientists in omics data-driven biological research.
CoRR
Erpai Luo, Jinmeng Jia, Yifan Xiong, Xiangyu Li, Xiaobo Guo, Baoqi Yu, Lei Wei, Xuegong Zhang
2025 J jnl
Computational methods and data resources for predicting tumor neoantigens.
Briefings Bioinform.
Xiaofei Zhao, Lei Wei, Xuegong Zhang
2025 J jnl
Deconer: An Evaluation Toolkit for Reference-based Deconvolution Methods Using Gene Expression Data.
Genom. Proteom. Bioinform.
Wei Zhang, Xianglin Zhang, Qiao Liu, Lei Wei, Xu Qiao, Rui Gao, Zhiping Liu, Xiaowo Wang
2025 J jnl
DrVD-Bench: Do Vision-Language Models Reason Like Human Doctors in Medical Image Diagnosis?
CoRR
Tianhong Zhou, Yin Xu, Yingtao Zhu, Chuxi Xiao, Haiyang Bian, Lei Wei, Xuegong Zhang
2025 — conf
GeST: Towards Building A Generative Pretrained Transformer for Learning Cellular Spatial Context.
MLCB
Minsheng Hao, Nan Yan, Haiyang Bian, Yixin Chen, Jin Gu, Lei Wei, Xuegong Zhang
2025 J jnl
Quantifying Early-Stage Lung Adenocarcinoma Progression with a Radiomic Trajectory.
npj Digit. Medicine
Zhen-Bin Qiu, Jiaqi Li, Shihua Dou, Qiuchen Meng, Meng-Min Wang, Hong-Ji Li, Chao Zhang, Hongsheng Xie, Ben-Yuan Jiang, Jun-Tao Lin, Jia-Tao Zhang, Fang-Ping Xu, Jin-Hai Yan, Lei Wei, Yi-Long Wu, Haibo Wang, Lin Yang, Xuegong Zhang, Wen-Zhao Zhong
2025 J jnl
uHAF: a unified hierarchical annotation framework for cell type standardization and harmonization.
Bioinform.
Haiyang Bian, Yinxin Chen, Lei Wei, Xuegong Zhang
2024 J jnl
Benchmarking multi-omics integration algorithms across single-cell RNA and ATAC data.
Briefings Bioinform.
Chuxi Xiao, Yixin Chen, Qiuchen Meng, Lei Wei, Xuegong Zhang
2024 J jnl
Current opinions on large cellular models.
Quant. Biol.
Minsheng Hao, Lei Wei, Fan Yang, Jianhua Yao, Christina V. Theodoris, Bo Wang, Xin Li, Ge Yang, Xuegong Zhang
2024 B conf
Discovering and Overcoming the Bias in Neoantigen Identification by Unified Machine Learning Models.
RECOMB
Ziting Zhang, Wenxu Wu, Lei Wei, Xiaowo Wang
2024 J jnl
NeoHunter: Flexible software for systematically detecting neoantigens from sequencing data.
Quant. Biol.
Tianxing Ma, Zetong Zhao, Haochen Li, Lei Wei, Xuegong Zhang
2024 J jnl
QueST: Querying Functional and Structural Niches on Spatial Transcriptomics Data via Contrastive Subgraph Embedding.
CoRR
Mo Chen, Minsheng Hao, Xuegong Zhang, Lei Wei
2024 J jnl
scDecouple: decoupling cellular response from infected proportion bias in scCRISPR-seq.
Briefings Bioinform.
Qiuchen Meng, Lei Wei, Kun Ma, Ming Shi, Xinyi Lin, Joshua W. K. Ho, Yinqing Li, Xuegong Zhang
2024 J jnl
scDiffusion: conditional generation of high-quality single-cell data using diffusion model.
Bioinform.
Erpai Luo, Minsheng Hao, Lei Wei, Xuegong Zhang
2024 J jnl
scDiffusion: conditional generation of high-quality single-cell data using diffusion model.
CoRR
Erpai Luo, Minsheng Hao, Lei Wei, Xuegong Zhang
2024 B conf
scMulan: A Multitask Generative Pre-Trained Language Model for Single-Cell Analysis.
RECOMB
Haiyang Bian, Yixin Chen, Xiaomin Dong, Chen Li, Minsheng Hao, Sijie Chen, Jinyi Hu, Maosong Sun, Lei Wei, Xuegong Zhang
2023 J jnl
Building digital life systems for future biology and medicine.
Quant. Biol.
Xuegong Zhang, Lei Wei, Rui Jiang, Xiaowo Wang, Jin Gu, Zhen Xie, Hairong Lv
2023 J jnl
Decoding functional cell-cell communication events by multi-view graph learning on spatial transcriptomics.
Briefings Bioinform.
Haochen Li, Tianxing Ma, Minsheng Hao, Wenbo Guo, Jin Gu, Xuegong Zhang, Lei Wei
2023 J jnl
Machine Learning in Lung Cancer Radiomics.
Mach. Intell. Res.
Jiaqi Li, Zhuofeng Li, Lei Wei, Xuegong Zhang
2022 J jnl
ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data.
Briefings Bioinform.
Wei Zhang, Hanwen Xu, Rong Qiao, Bixi Zhong, Xianglin Zhang, Jin Gu, Xuegong Zhang, Lei Wei, Xiaowo Wang
2022 J jnl
Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA.
Briefings Bioinform.
Xianglin Zhang, Xiaodong Jia, Bixi Zhong, Lei Wei, Jiaqi Li, Wei Zhang, Huan Fang, Yanda Li, Yinying Lu, Xiaowo Wang
2021 J jnl
CellTracker: an automated toolbox for single-cell segmentation and tracking of time-lapse microscopy images.
Bioinform.
Tao Hu, Shixiong Xu, Lei Wei, Xuegong Zhang, Xiaowo Wang
2021 J jnl
DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads.
Briefings Bioinform.
Jiaqi Li, Lei Wei, Xianglin Zhang, Wei Zhang, Haochen Wang, Bixi Zhong, Zhen Xie, Hairong Lv, Xiaowo Wang
2021 J jnl
Single-cell Transcriptomes Reveal Characteristics of MicroRNAs in Gene Expression Noise Reduction.
Genom. Proteom. Bioinform.
Tao Hu, Lei Wei, Shuailin Li, Tianrun Cheng, Xuegong Zhang, Xiaowo Wang
2021 J jnl
cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data.
Bioinform.
Wei Zhang, Lei Wei, Jiaqi Huang, Bixi Zhong, Jiaqi Li, Hanwen Xu, Shuying He, Yu Liu, Juhong Liu, Hairong Lv, Xiaowo Wang
2019 J jnl
Regulation by competition: a hidden layer of gene regulatory network.
Quant. Biol.
Lei Wei, Ye Yuan, Tao Hu, Shuailin Li, Tianrun Cheng, Jinzhi Lei, Zhen Xie, Michael Q. Zhang, Xiaowo Wang