Lee Ann McCue

14 papers A 2Misc 1Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2021 J jnl
Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.
Frontiers Bioinform.
Bin Hu, Shane Canon, Emiley A. Eloe-Fadrosh, Fnu Anubhav, Michal Babinski, Yuri Corilo, Karen Davenport, William D. Duncan, Kjiersten Fagnan, Mark Flynn, Brian Foster, David Hays, Marcel Huntemann, Elais Player Jackson, Julia Kelliher, Po-E Li, Chien-Chi Lo, Douglas Mans, Lee Ann McCue, Nigel Mouncey, Christopher J. Mungall, Paul D. Piehowski, Samuel O. Purvine, Montana Smith, Neha Jacob Varghese, Donald Winston, Yan Xu, Patrick S. G. Chain
2021 — conf
Leveraging Ontologies within the National Microbiome Data Collaborative.
ICBO
William D. Duncan, Faiza Ahmed, Fnu Anubhav, Jeffrey Baumes, Jonathan Beezley, Mark Borkum, Lisa M. Bramer, Shane Canon, Patrick S. G. Chain, Danielle Christianson, Yuri Corilo, Karen Davenport, Brandon Davis, Meghan Drake, Kjiersten Fagnan, Mark Flynn, David Hays, Bin Hu, Marcel Huntemann, Julia Kelliher, Sofya Lebedeva, Po-E Li, Mary Lipton, Chien-Chi Lo, Douglas Mans, Stanton Martin, Lee Ann McCue, David Millard, Kayd Miller, Nigel Mouncey, Paul D. Piehowski, Elais Player Jackson, Anastasiya Prymolenna, Samuel O. Purvine, T. B. K. Reddy, Rachel Richardson, Migun Shakya, Montana Smith, Jagadish Chandrabose Sundaramurthi, Mark A. Miller, Deepak R. Unni, Pajau Vangay, Bruce Wilson, Donald Winston, Elisha M. Wood-Charlson, Yan Xu, Emiley A. Eloe-Fadrosh, Christopher J. Mungall
2020 J jnl
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.
BMC Bioinform.
Silas Kieser, Joseph Brown, Evgeny M. Zdobnov, Mirko Trajkovski, Lee Ann McCue
2020 J jnl
ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data.
PLoS Comput. Biol.
Lisa M. Bramer, Amanda M. White, Kelly G. Stratton, Allison M. Thompson, Daniel Claborne, Kirsten Hofmockel, Lee Ann McCue
2018 J jnl
Hundo: a Snakemake workflow for microbial community sequence data.
PeerJ Prepr.
Joseph Brown, Nicole Zavoshy, Colin J. Brislawn, Lee Ann McCue
2017 J jnl
FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool.
Bioinform.
Joseph W. Brown, Meg Pirrung, Lee Ann McCue
2013 J jnl
SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes.
Bioinform.
Darren S. Curtis, Aaron R. Phillips, Stephen J. Callister, Sean Conlan, Lee Ann McCue
2009 Misc conf
A Bayesian Integration Model of High-Throughput Proteomics and Metabolomics Data for Improved Early Detection of Microbial Infections.
Pacific Symposium on Biocomputing
Bobbie-Jo M. Webb-Robertson, Lee Ann McCue, Nathaniel Beagley, Jason E. McDermott, David S. Wunschel, Susan M. Varnum, Jian Zhi Hu, Nancy G. Isern, Garry W. Buchko, Kathleen McAteer, Joel G. Pounds
2008 J jnl
Measuring Global Credibility with Application to Local Sequence Alignment.
PLoS Comput. Biol.
Bobbie-Jo M. Webb-Robertson, Lee Ann McCue, Charles E. Lawrence
2007 J jnl
A phylogenetic Gibbs sampler that yields centroid solutions for
Bioinform.
Lee Aaron Newberg, William A. Thompson, Sean Conlan, Thomas M. Smith, Lee Ann McCue, Charles E. Lawrence
2007 J jnl
PhyloScan: identification of transcription factor binding sites using cross-species evidence.
Algorithms Mol. Biol.
C. Steven Carmack, Lee Ann McCue, Lee Aaron Newberg, Charles E. Lawrence
2007 J jnl
The Gibbs Centroid Sampler.
Nucleic Acids Res.
William A. Thompson, Lee Aaron Newberg, Sean Conlan, Lee Ann McCue, Charles E. Lawrence
2006 A conf
Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge.
SC
Christopher S. Oehmen, Lee Ann McCue, Joshua N. Adkins, Katrina M. Waters, Tim Carlson, William R. Cannon, Bobbie-Jo M. Webb-Robertson, Douglas J. Baxter, Elena S. Peterson, Mudita Singhal, Anuj R. Shah, Kyle R. Klicker
1998 A conf
Bayesian Protein Family Classifier.
ISMB
Kunbin Qu, Lee Ann McCue, Charles E. Lawrence