Layla Oesper

22 papers A 1B 2Journal 10Unranked 8
YearRankTypeTitle / Venue / Authors
2025 — conf
VECTr: Visualizing Distance Measures for Clonal Trees.
BCB
Thea Traw, Quoc Nguyen, Layla Oesper, Eric Carlson Alexander
2023 J jnl
A weighted distance-based approach for deriving consensus tumor evolutionary trees.
Bioinform.
Ziyun Guang, Matthew Smith-Erb, Layla Oesper
2023 — conf
Generalized Matching Distance: Tumor Phylogeny Comparison Beyond the Infinite Sites Assumption.
BCB
Quoc Nguyen, Layla Oesper
2022 — conf
An Approach to Relax the Infinite Sites Assumption in Tumor Phylogeny Distance Measures.
BIBM
Quoc Nguyen, Layla Oesper
2022 — conf
Combining Distance Measures on Tumor Evolutionary Trees.
BIBM
Cecilia Ehrlichman, Layla Oesper
2022 — conf
Deriving consensus tumor trees using integer linear programming.
BIBM
Matthew Smith-Erb, Ziyun Guang, Layla Oesper
2022 J jnl
GraPhyC: Using Consensus to Infer Tumor Evolution.
IEEE ACM Trans. Comput. Biol. Bioinform.
Kiya Govek, Camden Sikes, Yangqiaoyu Zhou, Layla Oesper
2020 J jnl
Distance measures for tumor evolutionary trees.
Bioinform.
Zach Dinardo, Kiran Tomlinson, Anna M. Ritz, Layla Oesper
2020 A conf
Expanding Undergraduate Exposure to Computer Science Subfields: Resources and Lessons from a Hands-on Computational Biology Workshop.
SIGCSE
Layla Oesper, Anya E. Vostinar
2020 J jnl
The evolutionary history of 2,658 cancers.
Nat.
Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo
2018 — conf
A Consensus Approach to Infer Tumor Evolutionary Histories.
BCB
Kiya Govek, Camden Sikes, Layla Oesper
2018 — conf
Examining Tumor Phylogeny Inference in Noisy Sequencing Data.
BIBM
Kiran Tomlinson, Layla Oesper
2018 J jnl
Identifying simultaneous rearrangements in cancer genomes.
Bioinform.
Layla Oesper, Simone Dantas, Benjamin J. Raphael
2016 J jnl
Multi-State Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing.
CoRR
Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael
2016 B conf
Multi-state Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing.
RECOMB
Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael
2015 — —
Computational Characterization of Heterogeneity and Rearrangements in Cancer.
Layla Oesper
2015 J jnl
Reconstruction of clonal trees and tumor composition from multi-sample sequencing data.
Bioinform.
Mohammed El-Kebir, Layla Oesper, Hannah Acheson-Field, Benjamin J. Raphael
2014 J jnl
Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data.
Bioinform.
Layla Oesper, Gryte Satas, Benjamin J. Raphael
2013 B conf
Inferring Intra-tumor Heterogeneity from High-Throughput DNA Sequencing Data.
RECOMB
Layla Oesper, Ahmad Mahmoody, Benjamin J. Raphael
2013 — conf
Workshop: Reconstructing the organization of cancer genomes.
ICCABS
Layla Oesper, Benjamin J. Raphael
2012 J jnl
Reconstructing cancer genomes from paired-end sequencing data.
BMC Bioinform.
Layla Oesper, Anna M. Ritz, Sarah J. Aerni, Ryan Drebin, Benjamin J. Raphael
2011 J jnl
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks.
Source Code Biol. Medicine
Layla Oesper, Daniele Merico, Ruth Isserlin, Gary D. Bader