Laurence Yang

18 papers A* 1C 1Journal 14Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
StressME: Unified computing framework of Escherichia coli metabolism, gene expression, and stress responses.
PLoS Comput. Biol.
Jiao Zhao, Ke Chen, Bernhard O. Palsson, Laurence Yang
2023 J jnl
GripNet: Graph information propagation on supergraph for heterogeneous graphs.
Pattern Recognit.
Hao Xu, Shengqi Sang, Peizhen Bai, Ruike Li, Laurence Yang, Haiping Lu
2021 J jnl
A dynamic metabolic map for diabetes.
Nat. Comput. Sci.
Jiao Zhao, Hao Xu, Laurence Yang
2021 — conf
Compound Screening with Deep Learning for Neglected Diseases: Leishmaniasis.
MLBC
Jonathan A. J. Smith, Hao Xu, Xinran Li, Laurence Yang, Jahir Gutierrez
2021 J jnl
Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth.
PLoS Comput. Biol.
Colton J. Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O. Palsson
2020 J jnl
Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes.
BMC Bioinform.
Nathan Mih, Jonathan M. Monk, Xin Fang, Edward Catoiu, David Heckmann, Laurence Yang, Bernhard O. Palsson
2020 J jnl
Visualizing metabolic network dynamics through time-series metabolomic data.
BMC Bioinform.
Lea Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur E. Sigurjónsson, Ottar Rolfsson, Julian Heinrich, Andreas Dräger
2019 J jnl
BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.
PLoS Comput. Biol.
Jean-Christophe Lachance, Colton J. Lloyd, Jonathan M. Monk, Laurence Yang, Anand Sastry, Yara Seif, Bernhard O. Palsson, Sébastien Rodrigue, Adam M. Feist, Zachary A. King, Pierre-Étienne Jacques
2019 J jnl
DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression.
BMC Syst. Biol.
Laurence Yang, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard O. Palsson
2019 A* conf
Estimating Cellular Goals from High-Dimensional Biological Data.
KDD
Laurence Yang, Michael A. Saunders, Jean-Christophe Lachance, Bernhard O. Palsson, José Bento
2019 J jnl
Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli.
PLoS Comput. Biol.
Bin Du, Laurence Yang, Colton J. Lloyd, Xin Fang, Bernhard O. Palsson
2018 J jnl
COBRAme: A computational framework for genome-scale models of metabolism and gene expression.
PLoS Comput. Biol.
Colton J. Lloyd, Ali Ebrahim, Laurence Yang, Zachary A. King, Edward Catoiu, Edward J. O'Brien, Joanne K. Liu, Bernhard O. Palsson
2018 J jnl
Genome-scale estimation of cellular objectives.
CoRR
Laurence Yang, José Bento, Jean-Christophe Lachance, Bernhard O. Palsson
2017 J jnl
Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells.
PLoS Comput. Biol.
James T. Yurkovich, Laurence Yang, Bernhard O. Palsson
2017 — conf
Utilizing biomarkers to forecast quantitative metabolite concentration profiles in human red blood cells.
CCTA
James T. Yurkovich, Laurence Yang, Bernhard O. Palsson
2016 J jnl
solveME: fast and reliable solution of nonlinear ME models.
BMC Bioinform.
Laurence Yang, Ding Ma, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard O. Palsson
2010 C conf
Designing experiments from noisy metabolomics data to refine constraint-based models.
ACC
Laurence Yang, Radhakrishnan Mahadevan, William R. Cluett
2008 J jnl
A bilevel optimization algorithm to identify enzymatic capacity constraints in metabolic networks.
Comput. Chem. Eng.
Laurence Yang, Radhakrishnan Mahadevan, William R. Cluett