Lars Malmström

15 papers Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2023 J jnl
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics.
PLoS Comput. Biol.
Carlos Gueto-Tettay, Di Tang, Lotta Happonen, Moritz Heusel, Hamed Khakzad, Johan Malmström, Lars Malmström
2021 J jnl
Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry data.
Bioinform.
Hamed Khakzad, Lotta Happonen, Johan Malmström, Lars Malmström
2021 J jnl
Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology.
PLoS Comput. Biol.
Hamed Khakzad, Lotta Happonen, Yasaman Karami, Sounak Chowdhury, Gizem Ertürk Bergdahl, Michael Nilges, Guy Tran Van Nhieu, Johan Malmström, Lars Malmström
2019 J jnl
Greedy de novo motif discovery to construct motif repositories for bacterial proteomes.
BMC Bioinform.
Hamed Khakzad, Johan Malmström, Lars Malmström
2017 J jnl
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research.
Nucleic Acids Res.
Katherine Wolstencroft, Olga Krebs, Jacky L. Snoep, Natalie J. Stanford, Finn Bacall, Martin Golebiewski, Rostyk Kuzyakiv, Quyen Nguyen, Stuart Owen, Stian Soiland-Reyes, Jakub Straszewski, David D. van Niekerk, Alan R. Williams, Lars Malmström, Bernd Rinn, Wolfgang Müller, Carole A. Goble
2015 J jnl
DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.
Bioinform.
Johan Teleman, Hannes L. Röst, George Rosenberger, Uwe Schmitt, Lars Malmström, Johan Malmström, Fredrik Levander
2015 J jnl
Efficient visualization of high-throughput targeted proteomics experiments: TAPIR.
Bioinform.
Hannes L. Röst, George Rosenberger, Ruedi Aebersold, Lars Malmström
2015 J jnl
iPortal: the swiss grid proteomics portal: Requirements and new features based on experience and usability considerations.
Concurr. Comput. Pract. Exp.
Peter Z. Kunszt, Lorenz Blum, Béla Hullár, Emanuel Schmid, Adam Srebniak, Witold Wolski, Bernd Rinn, Franz-Josef Elmer, Chandrasekhar Ramakrishnan, Andreas Quandt, Lars Malmström
2014 J jnl
aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data.
Bioinform.
George Rosenberger, Christina Ludwig, Hannes L. Röst, Ruedi Aebersold, Lars Malmström
2013 — conf
Improving the Swiss Grid Proteomics Portal: Requirements and new Features based on Experience and Usability Considerations.
IWSG
Peter Z. Kunszt, Lorenz Blum, Béla Hullár, Emanuel Schmid, Adam Srebniak, Witold Wolski, Bernd Rinn, Franz-Josef Elmer, Chandrasekhar Ramakrishnan, Andreas Quandt, Lars Malmström
2011 — conf
Accelerating 3D Protein Modeling Using Cloud Computing: Using Rosetta as a Service on the IBM SmartCloud.
e-Science Workshops
Peter Z. Kunszt, Lars Malmström, Nicola Fantini, Wibke Sudholt, Marcel Lautenschlager, Roland Reifler, Stefan Ruckstuhl
2011 J jnl
Xwalk: computing and visualizing distances in cross-linking experiments.
Bioinform.
Abdullah Kahraman, Lars Malmström, Ruedi Aebersold
2011 J jnl
openBIS: a flexible framework for managing and analyzing complex data in biology research.
BMC Bioinform.
Angela Bauch, Izabela Adamczyk, Piotr Buczek, Franz-Josef Elmer, Kaloyan Enimanev, Pawel Glyzewski, Manuel Kohler, Tomasz Pylak, Andreas Quandt, Chandrasekhar Ramakrishnan, Christian Beisel, Lars Malmström, Ruedi Aebersold, Bernd Rinn
2006 J jnl
2DDB - a bioinformatics solution for analysis of quantitative proteomics data.
BMC Bioinform.
Lars Malmström, György Marko-Varga, Gunilla Westergren-Thorsson, Thomas Laurell, Johan Malmström
2005 J jnl
The Yeast Resource Center Public Data Repository.
Nucleic Acids Res.
Michael Riffle, Lars Malmström, Trisha N. Davis