Lars Keld Nielsen

12 papers Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
PREFER: An Ontology for the PREcision FERmentation Community.
CoRR
Txell Amigó, Shawn Zheng Kai Tan, Angel Luu Phanthanourak, Sebastian Schulz, Pasquale D. Colaianni, Dominik M. Maszczyk, Ester Milesi, Ivan Schlembach, Mykhaylo Semenov Petrov, Marta Reventós Montané, Lars Keld Nielsen, Jochen Förster, Bernhard Ø. Palsson, Suresh Sudarsan, Alberto Santos
2025 J jnl
Unsupervised learning bioreactor regimes.
Comput. Chem. Eng.
Víctor Puig I Laborda, Lars Puiman, Teddy Groves, Cees Haringa, Lars Keld Nielsen
2024 J jnl
LooplessFluxSampler: an efficient toolbox for sampling the loopless flux solution space of metabolic models.
BMC Bioinform.
Pedro A. Saa, Sebastian Zapararte, Christopher C. Drovandi, Lars Keld Nielsen
2024 J jnl
Shu: visualization of high-dimensional biological pathways.
Bioinform.
Jorge Carrasco Muriel, Nicholas Cowie, Shannara Taylor Parkins, Marjan Mansouvar, Teddy Groves, Lars Keld Nielsen
2022 J jnl
The topology of genome-scale metabolic reconstructions unravels independent modules and high network flexibility.
PLoS Comput. Biol.
Verónica S. Martínez, Pedro A. Saa, Jason Jooste, Kanupriya Tiwari, Lake-Ee Quek, Lars Keld Nielsen
2021 J jnl
multiTFA: a Python package for multi-variate thermodynamics-based flux analysis.
Bioinform.
Vishnuvardhan Mahamkali, Tim McCubbin, Moritz Emanuel Beber, Elad Noor, Esteban Marcellin, Lars Keld Nielsen
2016 J jnl
Fast-SNP: a fast matrix pre-processing algorithm for efficient loopless flux optimization of metabolic models.
Bioinform.
Pedro A. Saa, Lars Keld Nielsen
2016 J jnl
ll-ACHRB: a scalable algorithm for sampling the feasible solution space of metabolic networks.
Bioinform.
Pedro A. Saa, Lars Keld Nielsen
2015 J jnl
A General Framework for Thermodynamically Consistent Parameterization and Efficient Sampling of Enzymatic Reactions.
PLoS Comput. Biol.
Pedro A. Saa, Lars Keld Nielsen
2014 J jnl
A depth-first search algorithm to compute elementary flux modes by linear programming.
BMC Syst. Biol.
Lake-Ee Quek, Lars Keld Nielsen
2014 J jnl
Extracting reaction networks from databases-opening Pandora's box.
Briefings Bioinform.
Liam G. Fearnley, Melissa J. Davis, Mark A. Ragan, Lars Keld Nielsen
2014 — conf
Towards a Large Integrated Model of Signal Transduction and Gene Regulation Events in Mammalian Cells.
BIOINFORMATICS
Liam G. Fearnley, Mark A. Ragan, Lars Keld Nielsen