Lars Arvestad

22 papers B 3Journal 17Unranked 2
YearRankTypeTitle / Venue / Authors
2018 J jnl
RecPhyloXML: a format for reconciled gene trees.
Bioinform.
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
2018 J jnl
alv: a console-based viewer for molecular sequence alignments.
J. Open Source Softw.
Lars Arvestad
2017 J jnl
Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias.
J. Comput. Biol.
Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad
2017 J jnl
VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces.
BMC Bioinform.
Raja Ali, Mikael Bark, Jorge Miró, Sayyed Muhammad, Joel Sjöstrand, Syed M. Zubair, Raja M. Abbas, Lars Arvestad
2016 J jnl
Assembly scaffolding with PE-contaminated mate-pair libraries.
Bioinform.
Kristoffer Sahlin, Rayan Chikhi, Lars Arvestad
2016 J jnl
Probabilistic inference of lateral gene transfer events.
BMC Bioinform.
Mehmood Alam Khan, Owais Mahmudi, Ikram Ullah, Lars Arvestad, Jens Lagergren
2016 B conf
Structural Variation Detection with Read Pair Information - An Improved Null-Hypothesis Reduces Bias.
RECOMB
Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad
2015 — conf
Hierarchical Assembly of Pools.
IWBBIO (2)
Riccardo Vicedomini, Francesco Vezzi, Simone Scalabrin, Lars Arvestad, Alberto Policriti
2014 J jnl
BESST - Efficient scaffolding of large fragmented assemblies.
BMC Bioinform.
Kristoffer Sahlin, Francesco Vezzi, Björn Nystedt, Joakim Lundeberg, Lars Arvestad
2013 J jnl
GAM-NGS: genomic assemblies merger for next generation sequencing.
BMC Bioinform.
Riccardo Vicedomini, Francesco Vezzi, Simone Scalabrin, Lars Arvestad, Alberto Policriti
2013 J jnl
GenPhyloData: realistic simulation of gene family evolution.
BMC Bioinform.
Joel Sjöstrand, Lars Arvestad, Jens Lagergren, Bengt Sennblad
2013 J jnl
Quantitative synteny scoring improves homology inference and partitioning of gene families.
BMC Bioinform.
Raja Ali, Sayyed Muhammad, Mehmood Alam Khan, Lars Arvestad
2013 J jnl
fastphylo: Fast tools for phylogenetics.
BMC Bioinform.
Mehmood Alam Khan, Isaac Elias, Erik Sjölund, Kristina Nylander, Roman Valls Guimera, Richard Schobesberger, Peter Schmitzberger, Jens Lagergren, Lars Arvestad
2012 J jnl
DLRS: gene tree evolution in light of a species tree.
Bioinform.
Joel Sjöstrand, Bengt Sennblad, Lars Arvestad, Jens Lagergren
2012 J jnl
Improved gap size estimation for scaffolding algorithms.
Bioinform.
Kristoffer Sahlin, Nathaniel Street, Joakim Lundeberg, Lars Arvestad
2010 J jnl
Classification of DNA sequences using Bloom filters.
Bioinform.
Henrik Stranneheim, Max Käller, Tobias Allander, Björn Andersson, Lars Arvestad, Joakim Lundeberg
2009 J jnl
The gene evolution model and computing its associated probabilities.
J. ACM
Lars Arvestad, Jens Lagergren, Bengt Sennblad
2007 J jnl
primetv: a viewer for reconciled trees.
BMC Bioinform.
Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglund Sonnhammer, Jens Lagergren, Lars Arvestad
2006 J jnl
Genome-Wide Survey for Biologically Functional Pseudogenes.
PLoS Comput. Biol.
Örjan Svensson, Lars Arvestad, Jens Lagergren
2004 B conf
Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution.
RECOMB
Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad
2003 — conf
Bayesian gene/species tree reconciliation and orthology analysis using MCMC.
ISMB (Supplement of Bioinformatics)
Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad
1997 B conf
Aligning Coding DNA in the Presence of Frame-Shift Errors.
CPM
Lars Arvestad