Lars Ailo Bongo

65 papers A 2B 3C 2Journal 38Unranked 19

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A Lightweight and Extensible Cell Segmentation and Classification Model for Whole Slide Images. CoRR Nikita Shvetsov, Thomas K. Kilvaer, Masoud Tafavvoghi, Anders Sildnes, Kajsa Møllersen, Lill-Tove Rasmussen Busund, Lars Ailo Bongo
2025	J	`jnl`	A lightweight and extensible cell segmentation and classification model for H&E-stained cancer whole slide images. Comput. Biol. Medicine Nikita Shvetsov, Thomas K. Kilvaer, Masoud Tafavvoghi, Anders Sildnes, Kajsa Møllersen, Lill-Tove Rasmussen Busund, Lars Ailo Bongo
2025	J	`jnl`	Automating tumor-infiltrating lymphocyte assessment in breast cancer histopathology images using QuPath: a transparent and accessible machine learning pipeline. CoRR Masoud Tafavvoghi, Lars Ailo Bongo, André Berli Delgado, Nikita Shvetsov, Anders Sildnes, Line Moi, Lill-Tove Rasmussen Busund, Kajsa Møllersen
2025	J	`jnl`	Navigating the tradeoff between personal privacy and data utility in speech anonymization for clinical research. npj Digit. Medicine Catherine Diaz-Asper, Lars Ailo Bongo, Brita Elvevåg
2025	J	`jnl`	Open-source framework for detecting bias and overfitting for large pathology images. CoRR Anders Sildnes, Nikita Shvetsov, Masoud Tafavvoghi, Vi Ngoc-Nha Tran, Kajsa Møllersen, Lill-Tove Rasmussen Busund, Thomas K. Kilvaer, Lars Ailo Bongo
2025	—	`conf`	Storycrafting With Constraints: Sámi Storytelling and Generative AI Workflows. CHI PLAY (Companion) Ernie Roby-Tomic, Samuel Valkeapää, Ánde Somby, Lars Ailo Bongo
2024	J	`jnl`	Coding historical causes of death data with Large Language Models. CoRR Bjørn-Richard Pedersen, Maisha Islam, Doris Tove Kristoffersen, Lars Ailo Bongo, Eilidh Garrett, Alice Reid, Hilde L. Sommerseth
2024	J	`jnl`	Deep learning-based classification of breast cancer molecular subtypes from H&E whole-slide images. CoRR Masoud Tafavvoghi, Anders Sildnes, Mehrdad Rakaee, Nikita Shvetsov, Lars Ailo Bongo, Lill-Tove Rasmussen Busund, Kajsa Møllersen
2024	J	`jnl`	Fast TILs estimation in lung cancer WSIs based on semi-stochastic patch sampling. CoRR Nikita Shvetsov, Anders Sildnes, Lill-Tove Rasmussen Busund, Stig Dalen, Kajsa Møllersen, Lars Ailo Bongo, Thomas K. Kilvaer
2024	—	`conf`	Interactive Storytelling for Communities, Heritage and Public Engagement. NordiCHI (Adjunct) Siiri Paananen, Karin B. Johansson, Lars Ailo Bongo, Clara Sayffaerth, Eleftherios Papachristos, Mari Suoheimo, Mikael Wiberg, Jonna Häkkilä
2024	J	`jnl`	Prompt Engineering a Schizophrenia Chatbot: Utilizing a Multi-Agent Approach for Enhanced Compliance with Prompt Instructions. CoRR Per Niklas Waaler, Musarrat Hussain, Igor Molchanov, Lars Ailo Bongo, Brita Elvevåg
2023	—	`conf`	Coding Historical Causes of Death Data with Large Language Models. AISoLA (Selected Papers) Bjørn-Richard Pedersen, Maisha Islam, Doris Tove Kristoffersen, Lars Ailo Bongo, Eilidh Garrett, Alice Reid, Hilde L. Sommerseth
2023	J	`jnl`	Interoperable synthetic health data with SyntHIR to enable the development of CDSS tools. CoRR Pavitra Chauhan, Mohsen Gamal Saad Askar, Bjørn Fjukstad, Lars Ailo Bongo, Edvard Pedersen
2023	J	`jnl`	More efficient manual review of automatically transcribed tabular data. CoRR Bjørn-Richard Pedersen, Rigmor Katrine Johansen, Einar J. Holsbø, Hilde L. Sommerseth, Lars Ailo Bongo
2023	J	`jnl`	Publicly available datasets of breast histopathology H&E whole-slide images: A systematic review. CoRR Masoud Tafavvoghi, Lars Ailo Bongo, Nikita Shvetsov, Lill-Tove Rasmussen Busund, Kajsa Møllersen
2022	J	`jnl`	A Pragmatic Machine Learning Approach to Quantify Tumor Infiltrating Lymphocytes in Whole Slide Images. CoRR Nikita Shvetsov, Morten Grønnesby, Edvard Pedersen, Kajsa Møllersen, Lill-Tove Rasmussen Busund, Ruth Schwienbacher, Lars Ailo Bongo, Thomas K. Kilvaer
2022	—	`conf`	Phonocardiogram Classification Using 1-Dimensional Inception Time Convolutional Neural Networks. CinC Bjørn-Jostein Singstad, Antony M. Gitau, Markus Kreutzer Johnsen, Johan Ravn, Lars Ailo Bongo, Henrik Schirmer
2022	J	`jnl`	Social network analysis of Staphylococcus aureus carriage in a general youth population. CoRR Dina Benedicte Stensen, Rafael Adolfo Nozal Cañadas, Lars Småbrekke, Karina Standahl Olsen, Christopher Sivert Nielsen, Kristian Svendsen, Anne Merethe Hanssen, Johanna Sollid, Gunnar Skov Simonsen, Lars Ailo Bongo, Anne-Sofie Furberg
2021	J	`jnl`	GeneNet VR: Interactive visualization of large-scale biological networks using a standalone headset. CoRR Álvaro Martínez Fernández, Lars Ailo Bongo, Edvard Pedersen
2021	J	`jnl`	Occode: an end-to-end machine learning pipeline for transcription of historical population censuses. CoRR Bjørn-Richard Pedersen, Einar J. Holsbø, Trygve Andersen, Nikita Shvetsov, Johan Ravn, Hilde Leikny Sommerseth, Lars Ailo Bongo
2020	J	`jnl`	Interactive exploration of population scale pharmacoepidemiology datasets. CoRR Tengel Ekrem Skar, Einar J. Holsbø, Kristian Svendsen, Lars Ailo Bongo
2019	J	`jnl`	Convolutional Neural Network for Breathing Phase Detection in Lung Sounds. Sensors Cristina Jácome, Johan Ravn, Einar J. Holsbø, Juan Carlos Aviles Solis, Hasse Melbye, Lars Ailo Bongo
2019	J	`jnl`	Convolutional neural network for breathing phase detection in lung sounds. CoRR Cristina Jácome, Johan Ravn, Einar J. Holsbø, Juan Carlos Aviles Solis, Hasse Melbye, Lars Ailo Bongo
2019	C	`conf`	Reproducible Data Analysis Pipelines for Precision Medicine. PDP Bjørn Fjukstad, Vanessa Dumeaux, Michael T. Hallett, Lars Ailo Bongo
2019	B	`conf`	Teaching Electronics and Programming in Norwegian Schools Using the air: bit Sensor Kit. ITiCSE Bjørn Fjukstad, Nina Angelvik, Morten Grønnesby, Maria Wulff Hauglann, Hedinn Gunhildrud, Fredrik Høisæther Rasch, Julianne Iversen, Margaret Dalseng, Lars Ailo Bongo
2019	J	`jnl`	Teaching Electronics and Programming in Norwegian Schools Using the air: bit Sensor Kit. CoRR Bjørn Fjukstad, Nina Angelvik, Morten Grønnesby, Maria Wulff Hauglann, Hedinn Gunhildrud, Fredrik Høisæther Rasch, Julianne Iversen, Margaret Dalseng, Lars Ailo Bongo
2018	A	`conf`	Low-Cost Programmable Air Quality Sensor Kits in Science Education. SIGCSE Bjørn Fjukstad, Nina Angelvik, Maria Wulff Hauglann, Joachim Sveia Knutsen, Morten Grønnesby, Hedinn Gunhildrud, Lars Ailo Bongo
2018	J	`jnl`	META-pipe Authorization service. F1000Research Inge Alexander Raknes, Lars Ailo Bongo
2018	J	`jnl`	Norwegian e-Infrastructure for Life Sciences (NeLS). F1000Research Kidane M. Tekle, Sveinung Gundersen, Kjetil Klepper, Lars Ailo Bongo, Inge Alexander Raknes, Xiaxi Li, Wei Zhang, Christian Andreetta, Teshome Dagne Mulugeta, Matús Kalas, Morten B. Rye, Erik Hjerde, Jeevan Karloss Antony Samy, Ghislain Fornous, Abdulrahman Azab, Dag Inge Våge, Eivind Hovig, Nils Peder Willassen, Finn Drabløs, Ståle Nygård, Kjell Petersen, Inge Jonassen
2018	J	`jnl`	Replication study: Development and validation of deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. CoRR Mike Voets, Kajsa Møllersen, Lars Ailo Bongo
2017	J	`jnl`	A Review of Scalable Bioinformatics Pipelines. Data Sci. Eng. Bjørn Fjukstad, Lars Ailo Bongo
2017	—	`conf`	Building Applications for Interactive Data Exploration in Systems Biology. BCB Bjørn Fjukstad, Vanessa Dumeaux, Karina Standahl Olsen, Eiliv Lund, Michael T. Hallett, Lars Ailo Bongo
2017	J	`jnl`	ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services. F1000Research Espen Mikal Robertsen, Hubert Denise, Alex L. Mitchell, Robert D. Finn, Lars Ailo Bongo, Nils Peder Willassen
2017	J	`jnl`	Interactions between the tumor and the blood systemic response of breast cancer patients. PLoS Comput. Biol. Vanessa Dumeaux, Bjørn Fjukstad, Hans E. Fjosne, Jan-Ole Frantzen, Marit Muri Holmen, Enno Rodegerdts, Ellen Schlichting, Anne-Lise Børresen-Dale, Lars Ailo Bongo, Eiliv Lund, Michael T. Hallett
2017	J	`jnl`	Large-scale biological meta-database management. Future Gener. Comput. Syst. Edvard Pedersen, Lars Ailo Bongo
2017	J	`jnl`	META-pipe cloud setup and execution. F1000Research Aleksandr Agafonov, Kimmo Mattila, Cuong Duong Tuan, Lars Tiede, Inge Alexander Raknes, Lars Ailo Bongo
2017	J	`jnl`	Machine Learning Based Crackle Detection in Lung Sounds. CoRR Morten Grønnesby, Juan Carlos Aviles Solis, Einar J. Holsbø, Hasse Melbye, Lars Ailo Bongo
2017	—	`conf`	nsroot: Minimalist process isolation tool implemented with Linux namespaces. NIK Inge Alexander Raknes, Bjørn Fjukstad, Lars Ailo Bongo
2016	—	`ch.`	Big Biological Data Management. Resource Management for Big Data Platforms Edvard Pedersen, Lars Ailo Bongo
2016	J	`jnl`	META-pipe - Pipeline Annotation, Analysis and Visualization of Marine Metagenomic Sequence Data. CoRR Espen Mikal Robertsen, Tim Kahlke, Inge Alexander Raknes, Edvard Pedersen, Erik Kjærner-Semb, Martin Ernstsen, Lars Ailo Bongo, Nils Peder Willassen
2016	J	`jnl`	nsroot: Minimalist Process Isolation Tool Implemented With Linux Namespaces. CoRR Inge Alexander Raknes, Bjørn Fjukstad, Lars Ailo Bongo
2015	J	`jnl`	Applications for ultrascale computing. Supercomput. Front. Innov. Milan Mihajlovic, Lars Ailo Bongo, Raimondas Ciegis, Neki Frasheri, Dragi Kimovski, Peter G. Kropf, Svetozar Margenov, Maya G. Neytcheva, Thomas Rauber, Gudula Rünger, Roman Trobec, Roel Wuyts, Roman Wyrzykowski, Jing Gong
2015	C	`conf`	Integrating Data-Intensive Computing Systems with Biological Data Analysis Frameworks. PDP Edvard Pedersen, Inge Alexander Raknes, Martin Ernstsen, Lars Ailo Bongo
2015	J	`jnl`	Kvik: three-tier data exploration tools for flexible analysis of genomic data in epidemiological studies. F1000Research Bjørn Fjukstad, Karina Standahl Olsen, Mie Jareid, Eiliv Lund, Lars Ailo Bongo
2015	J	`jnl`	Large-scale Biological Meta-Database Management. CoRR Edvard Pedersen, Lars Ailo Bongo
2015	—	`conf`	MORTAL - Multiparadigm Optimizing Retargetable Transdisciplinary Abstraction Language. NIK Ove Kåven, Lars Ailo Bongo
2014	—	`conf`	Data-Intensive Computing Infrastructure Systems for Unmodified Biological Data Analysis Pipelines. CIBB Lars Ailo Bongo, Edvard Pedersen, Martin Ernstsen
2014	—	`conf`	Kvik: Interactive exploration of genomic data from the NOWAC postgenome biobank. NIK Bjørn Fjukstad, Karina Standahl Olsen, Mie Jareid, Eiliv Lund, Lars Ailo Bongo
2014	—	`conf`	Mario: Interactive Tuning of Biological Analysis Pipelines Using Iterative Processing. Euro-Par Workshops (1) Martin Ernstsen, Erik Kjærner-Semb, Nils Peder Willassen, Lars Ailo Bongo
2014	B	`conf`	Mr. Clean: A Tool for Tracking and Comparing the Lineage of Scientific Visualization Code. VISSOFT Giacomo Tartari, Lars Tiede, Einar J. Holsbø, Kenneth Knudsen, Inge Alexander Raknes, Bjørn Fjukstad, Nicolle Mode, John Markus Bjørndalen, Eiliv Lund, Lars Ailo Bongo
2013	—	`conf`	Bulk synchronous visualization. PMAM Lars Ailo Bongo
2013	J	`jnl`	Functional Knowledge Transfer for High-accuracy Prediction of Under-studied Biological Processes. PLoS Comput. Biol. Christopher Y. Park, Aaron K. Wong, Casey S. Greene, Jessica Rowland, Yuanfang Guan, Lars Ailo Bongo, Rebecca D. Burdine, Olga G. Troyanskaya
2013	—	`conf`	Transparent Incremental Updates for Genomics Data Analysis Pipelines. Euro-Par Workshops Edvard Pedersen, Nils Peder Willassen, Lars Ailo Bongo
2012	J	`jnl`	IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks. Nucleic Acids Res. Aaron K. Wong, Christopher Y. Park, Casey S. Greene, Lars Ailo Bongo, Yuanfang Guan, Olga G. Troyanskaya
2010	A	`conf`	DFS: A File System for Virtualized Flash Storage. FAST William K. Josephson, Lars Ailo Bongo, David Flynn, Kai Li
2010	J	`jnl`	DFS: A File System for Virtualized Flash Storage. login Usenix Mag. William K. Josephson, Lars Ailo Bongo, David Flynn, Kai Li
2010	J	`jnl`	DFS: A file system for virtualized flash storage. ACM Trans. Storage William K. Josephson, Lars Ailo Bongo, Kai Li, David Flynn
2006	—	`conf`	Systems Support for Remote Visualization of Genomics Applications over Wide Area Networks. GCCB Lars Ailo Bongo, Grant Wallace, Tore Larsen, Kai Li, Olga G. Troyanskaya
2006	—	`conf`	Using Overdecomposition to Overlap Communication Latencies with Computation and Take Advantage of SMT Processors. ICPP Workshops Lars Ailo Bongo, Brian Vinter, Otto J. Anshus, Tore Larsen, John Markus Bjørndalen
2005	B	`conf`	Low Overhead High Performance Runtime Monitoring of Collective Communication. ICPP Lars Ailo Bongo, Otto J. Anshus, John Markus Bjørndalen
2004	—	`conf`	Collective Communication Performance Analysis Within the Communication System. Euro-Par Lars Ailo Bongo, Otto J. Anshus, John Markus Bjørndalen
2004	—	`conf`	Extending Collective Operations with Application Semantics for Improving Multi-Cluster Performance. ISPDC/HeteroPar Lars Ailo Bongo, Otto J. Anshus, John Markus Bjørndalen, Tore Larsen
2003	—	`conf`	EventSpace - Exposing and Observing Communication Behavior of Parallel Cluster Applications. Euro-Par Lars Ailo Bongo, Otto J. Anshus, John Markus Bjørndalen
2003	—	`conf`	Experiences Parallelizing, Configuring, Monitoring and Visualizing Applications for Clusters and Multi-Clusters. PARCO Otto J. Anshus, John Markus Bjørndalen, Lars Ailo Bongo
2002	—	`conf`	Scalable Processing and Communication Performance in a Multi-Media Related Context. EUROMICRO John Markus Bjørndalen, Otto J. Anshus, Tore Larsen, Lars Ailo Bongo, Brian Vinter