Lang Li

72 papers Misc 3Journal 52Unranked 16
YearRankTypeTitle / Venue / Authors
2026 J jnl
Derivation and validation of an algorithm for maternal-child linkage in electronic health records.
J. Am. Medical Informatics Assoc.
Colin M. Rogerson, Christopher W. Bartlett, John P. Price, Lang Li, Eneida A. Mendonça, Shaun J. Grannis
2025 J jnl
A multi-layer encoder prediction model for individual sample specific gene combination effect (MLEC-iGeneCombo).
PLoS Comput. Biol.
Yun Shen, Kunjie Fan, Birkan Gokbag, Nuo Sun, Chen Yang, Lijun Cheng, Lang Li
2025 J jnl
Biomedical literature-based clinical phenotype definition discovery using large language models.
Database J. Biol. Databases Curation
Samar Binkheder, Xiaofu Liu, Michael Wu, Lei Wang, Aditi Shendre, Sara K. Quinney, Wei-Qi Wei, Lang Li
2025 J jnl
DrugCombo: an informatics bridge for anticancer drug combination Phase I trial design.
Database J. Biol. Databases Curation
Lei Wang, Shijun Zhang, Lai Wei, Yuxi Zhu, Naleef Fareed, Lijun Cheng, Williams Carson, Dwight Owen, Yong Zang, Suyu Liu, Aditi Shendre, Xiaofu Liu, Lang Li
2025 J jnl
SubgroupTE: Advancing Treatment Effect Estimation with Subgroup Identification.
ACM Trans. Intell. Syst. Technol.
Seungyeon Lee, Ruoqi Liu, Wenyu Song, Lang Li, Ping Zhang
2024 J jnl
Discovering clinical drug-drug interactions with known pharmacokinetics mechanisms using spontaneous reporting systems and electronic health records.
J. Biomed. Informatics
Eugene Jeong, Yu Su, Lang Li, You Chen
2024 J jnl
Environment Scan of Generative AI Infrastructure for Clinical and Translational Science.
CoRR
Betina Idnay, Zihan Xu, William G. Adams, Mohammad Adibuzzaman, Nicholas R. Anderson, Neil Bahroos, Douglas S. Bell, Cody Bumgardner, Thomas R. Campion Jr., Victor M. Castro, James J. Cimino, I. Glenn Cohen, David A. Dorr, Peter L. Elkin, Jungwei W. Fan, Todd Ferris, David J. Foran, David A. Hanauer, Mike Hogarth, Kun Huang, Jayashree Kalpathy-Cramer, Manoj Kandpal, Niranjan S. Karnik, Avnish Katoch, Albert M. Lai, Christophe G. Lambert, Lang Li, Christopher J. Lindsell, Jinze Liu, Zhiyong Lu, Yuan Luo, Peter McGarvey, Eneida A. Mendonça, Parsa Mirhaji, Shawn N. Murphy, John D. Osborne, Ioannis Ch. Paschalidis, Paul A. Harris, Fred W. Prior, Nicholas J. Shaheen, Nawar Shara, Ida Sim, Umberto Tachinardi, Lemuel R. Waitman, Rosalind J. Wright, Adrian H. Zai, Kai Zheng, Sandra Soo-Jin Lee, Bradley A. Malin, Karthik Natarajan, W. Nicholson Price, Rui Zhang, Yiye Zhang, Hua Xu, Jiang Bian, Chunhua Weng, Yifan Peng
2024 J jnl
SubgroupTE: Advancing Treatment Effect Estimation with Subgroup Identification.
CoRR
Seungyeon Lee, Ruoqi Liu, Wenyu Song, Lang Li, Ping Zhang
2023 J jnl
A mobile health application for patients eligible for statin therapy: app development and qualitative feedback on design and usability.
BMC Medical Informatics Decis. Mak.
Weidan Cao, Lang Li, Puneet Mathur, John Thompson, M. Wesley Milks
2023 J jnl
Multiple sampling schemes and deep learning improve active learning performance in drug-drug interaction information retrieval analysis from the literature.
J. Biomed. Semant.
Weixin Xie, Kunjie Fan, Shijun Zhang, Lang Li
2022 J jnl
CEDA: integrating gene expression data with CRISPR-pooled screen data identifies essential genes with higher expression.
Bioinform.
Yue Zhao, Lianbo Yu, Xue Wu, Haoran Li, Kevin R. Coombes, Kin Fai Au, Lijun Cheng, Lang Li
2022 J jnl
Correction: PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature.
J. Biomed. Semant.
Samar Binkheder, Heng-Yi Wu, Sara K. Quinney, Shijun Zhang, Md. Muntasir Zitu, Chienwei Chiang, Lei Wang, Josette Jones, Lang Li
2022 J jnl
DGCyTOF: Deep learning with graphic cluster visualization to predict cell types of single cell mass cytometry data.
PLoS Comput. Biol.
Lijun Cheng, Pratik Karkhanis, Birkan Gokbag, Yueze Liu, Lang Li
2022 J jnl
DSCN: Double-target selection guided by CRISPR screening and network.
PLoS Comput. Biol.
Enze Liu, Xue Wu, Lei Wang, Yang Huo, Huanmei Wu, Lang Li, Lijun Cheng
2022 J jnl
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature.
J. Biomed. Semant.
Samar Binkheder, Heng-Yi Wu, Sara K. Quinney, Shijun Zhang, Md. Muntasir Zitu, Chienwei Chiang, Lei Wang, Josette Jones, Lang Li
2022 — conf
Thinking about GPT-3 In-Context Learning for Biomedical IE? Think Again.
EMNLP (Findings)
Bernal Jimenez Gutierrez, Nikolas McNeal, Clayton Washington, You Chen, Lang Li, Huan Sun, Yu Su
2022 J jnl
Thinking about GPT-3 In-Context Learning for Biomedical IE? Think Again.
CoRR
Bernal Jiménez Gutiérrez, Nikolas McNeal, Clay Washington, You Chen, Lang Li, Huan Sun, Yu Su
2022 J jnl
Translational drug-interaction corpus.
Database J. Biol. Databases Curation
Shijun Zhang, Heng-Yi Wu, Lei Wang, Gongbo Zhang, Luis M. Rocha, Hagit Shatkay, Lang Li
2021 J jnl
A Fast and Furious Bayesian Network and Its Application of Identifying Colon Cancer to Liver Metastasis Gene Regulatory Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Enze Liu, Jin Li, Garrett Kinnebrew, Pengyue Zhang, Yan Zhang, Lijun Cheng, Lang Li
2021 J jnl
Artificial intelligence and machine learning methods in predicting anti-cancer drug combination effects.
Briefings Bioinform.
Kunjie Fan, Lijun Cheng, Lang Li
2021 — conf
Detecting Drug-Drug Interactions in COVID-19 Patients.
MedInfo
Eugene Jeong, Anna K. Person, Joanna L. Stollings, Yu Su, Lang Li, You Chen
2021 Misc conf
Discovering Drug-Drug Interactions in COVID-19 Patients.
AMIA
Eugene Jeong, Anna K. Person, Joanna L. Stollings, Lang Li, You Chen
2021 J jnl
Improved Adverse Drug Event Prediction Through Information Component Guided Pharmacological Network Model (IC-PNM).
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiangmin Ji, Lei Wang, Liyan Hua, Xueying Wang, Pengyue Zhang, Aditi Shendre, Weixing Feng, Jin Li, Lang Li
2020 J jnl
Drug-drug interaction prediction based on co-medication patterns and graph matching.
Int. J. Comput. Biol. Drug Des.
Wen-Hao Chiang, Li Shen, Lang Li, Xia Ning
2020 J jnl
Mining and visualizing high-order directional drug interaction effects using the FAERS database.
BMC Medical Informatics Decis. Mak.
Xiaohui Yao, Tiffany Tsang, Qing Sun, Sara K. Quinney, Pengyue Zhang, Xia Ning, Lang Li, Li Shen
2020 J jnl
Network-based prediction of drug-target interactions using an arbitrary-order proximity embedded deep forest.
Bioinform.
Xiangxiang Zeng, Siyi Zhu, Yuan Hou, Pengyue Zhang, Lang Li, Jing Li, L. Frank Huang, Stephen J. Lewis, Ruth Nussinov, Feixiong Cheng
2019 J jnl
Drug-drug interaction prediction based on co-medication patterns and graph matching.
CoRR
Wen-Hao Chiang, Li Shen, Lang Li, Xia Ning
2019 — ch.
Gene Regulatory Network Review.
Encyclopedia of Bioinformatics and Computational Biology (2)
Enze Liu, Lang Li, Lijun Cheng
2019 J jnl
Mining Directional Drug Interaction Effects on Myopathy Using the FAERS Database.
IEEE J. Biomed. Health Informatics
Danai Chasioti, Xiaohui Yao, Pengyue Zhang, Samuel Lerner, Sara K. Quinney, Xia Ning, Lang Li, Li Shen
2018 — conf
Analyzing Patterns of Literature-Based Phenotyping Definitions for Text Mining Applications.
ICHI
Samar Binkheder, Heng-Yi Wu, Sara K. Quinney, Lang Li
2018 J jnl
Drug Recommendation toward Safe Polypharmacy.
CoRR
Wen-Hao Chiang, Li Shen, Lang Li, Xia Ning
2018 — conf
Identifying Experimental Evidence in Biomedical Abstracts Relevant to Drug-Drug Interactions.
BCB
Gongbo Zhang, Debarati Roychowdhury, Pengyuan Li, Heng-Yi Wu, Shijun Zhang, Lang Li, Hagit Shatkay
2018 J jnl
Pattern Discovery from High-Order Drug-Drug Interaction Relations.
J. Heal. Informatics Res.
Wen-Hao Chiang, Titus Schleyer, Li Shen, Lang Li, Xia Ning
2018 J jnl
Signal translational efficiency between mRNA expression and antibody-based protein expression for breast cancer and its subtypes from cell lines to tissue.
Int. J. Comput. Biol. Drug Des.
Aida Yazdanparast, Lang Li, Milan Radovich, Lijun Cheng
2017 J jnl
Expression quantitative locus mapping for identification of hotspots using an empirical Bayes mixture model.
Int. J. Comput. Biol. Drug Des.
Guanglong Jiang, Yingqiang Fu, Pengyue Zhang, Shirin Ardeshir-Rouhani-Fard, Lijun Cheng, Lang Li, Zhigao Li
2017 — conf
Identifying articles relevant to drug-drug interaction: Addressing class imbalance.
BIBM
Gongbo Zhang, Moumita Bhattacharya, Heng-Yi Wu, Pengyuan Li, Lang Li, Hagit Shatkay
2017 J jnl
PMTDS: a computational method based on genetic interaction networks for Precision Medicine Target-Drug Selection in cancer.
Quant. Biol.
Varshini Vasudevaraja, Jamie Renbarger, Ridhhi Girish Shah, Garrett Kinnebrew, Murray Korc, Limei Wang, Yang Huo, Enze Liu, Lang Li, Lijun Cheng
2017 — conf
Pattern Discovery from Directional High-Order Drug-Drug Interaction Relations.
ICHI
Xia Ning, Titus Schleyer, Li Shen, Lang Li
2017 — conf
Predicting High-Order Directional Drug-Drug Interaction Relations.
ICHI
Xia Ning, Li Shen, Lang Li
2017 J jnl
RareVar: A Framework for Detecting Low-Frequency Single-Nucleotide Variants.
J. Comput. Biol.
Yangyang Hao, Xiaoling Xuei, Lang Li, Harikrishna Nakshatri, Howard J. Edenberg, Yunlong Liu
2017 J jnl
Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach.
PLoS Comput. Biol.
Raphaël Mourad, Lang Li, Olivier Cuvier
2017 J jnl
Using machine learning algorithms to identify genes essential for cell survival.
BMC Bioinform.
Santosh Philips, Heng-Yi Wu, Lang Li
2016 J jnl
A bioinformatics approach for precision medicine off-label drug drug selection among triple negative breast cancer patients.
J. Am. Medical Informatics Assoc.
Lijun Cheng, Bryan P. Schneider, Lang Li
2016 J jnl
Erratum to: Extracting drug-enzyme relation from literature as evidence for drug drug interaction.
J. Biomed. Semant.
Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu
2016 J jnl
Extracting drug-enzyme relation from literature as evidence for drug drug interaction.
J. Biomed. Semant.
Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu
2016 J jnl
Leveraging syntactic and semantic graph kernels to extract pharmacokinetic drug drug interactions from biomedical literature.
BMC Syst. Biol.
Yaoyun Zhang, Heng-Yi Wu, Jun Xu, Jingqi Wang, Ergin Soysal, Lang Li, Hua Xu
2016 Misc conf
Monitoring Potential Drug Interactions and Reactions via Network Analysis of Instagram User Timelines.
PSB
Rion Brattig Correia, Lang Li, Luis M. Rocha
2015 J jnl
Monitoring Potential Drug Interactions and Reactions via Network Analysis of Instagram User Timelines.
CoRR
Rion Brattig Correia, Lang Li, Luis M. Rocha
2014 J jnl
Extraction of Pharmacokinetic Evidence of Drug-drug Interactions from the Literature.
CoRR
Artemy Kolchinsky, Anália Lourenço, Heng-Yi Wu, Lang Li, Luis M. Rocha
2014 — conf
Mining massive SNP data for identifying associated SNPs and uncovering gene relationships.
BCB
Amy Webb, Aaron Albin, Zhan Ye, Majid Rastegar-Mojarad, Kun Huang, Jeffrey D. Parvin, Wolfgang Sadee, Lang Li, Simon M. Lin, Yang Xiang
2014 J jnl
Statistical identifiability and convergence evaluation for nonlinear pharmacokinetic models with particle swarm optimization.
Comput. Methods Programs Biomed.
Seongho Kim, Lang Li
2013 J jnl
An integrated pharmacokinetics ontology and corpus for text mining.
BMC Bioinform.
Heng-Yi Wu, Shreyas D. Karnik, Abhinita Subhadarshini, Zhiping Wang, Santosh Philips, Xu Han, Chienwei Chiang, Lei Liu, Malaz Boustani, Luis M. Rocha, Sara K. Quinney, David A. Flockhart, Lang Li
2013 Misc conf
Evaluation of Linear Classifiers on Articles Containing Pharmacokinetic Evidence of Drug-Drug Interactions.
Pacific Symposium on Biocomputing
Artemy Kolchinsky, Anália Lourenço, Lang Li, Luis M. Rocha
2012 J jnl
A dynamic time order network for time-series gene expression data analysis.
BMC Syst. Biol.
Pengyue Zhang, Raphaël Mourad, Yang Xiang, Kun Huang, Tim Hui-Ming Huang, Kenneth P. Nephew, Yunlong Liu, Lang Li
2012 J jnl
Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions
CoRR
Artemy Kolchinsky, Anália Lourenço, Lang Li, Luis M. Rocha
2012 J jnl
Literature Based Drug Interaction Prediction with Clinical Assessment Using Electronic Medical Records: Novel Myopathy Associated Drug Interactions.
PLoS Comput. Biol.
Jon D. Duke, Xu Han, Zhiping Wang, Abhinita Subhadarshini, Shreyas D. Karnik, Xiaochun Li, Stephen D. Hall, Yan Jin, J. Thomas Callaghan, J. Marc Overhage, David A. Flockhart, R. Matthew Strother, Sara K. Quinney, Lang Li
2011 J jnl
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer.
BMC Syst. Biol.
Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li
2011 — conf
An ERα/modulator regulatory network in the breast cancer cells.
GENSiPS
Heng-Yi Wu, Yu Wang, Pengyue Zheng, Guanglong Jiang, Yunlong Liu, Tim Hui-Ming Huang, Kenneth P. Nephew, Lang Li
2011 — conf
Empirical bayes model comparisons for differential methylation analysis.
GENSiPS
Mingxiang Teng, Yadong Wang, Yunlong Liu, Seongho Kim, Curtis Balch, Kenneth P. Nephew, Lang Li
2011 — conf
The Application and Research of a Simulation-Based Line Balancing Method.
ICDMA
Peng Liu, Lang Li
2010 J jnl
Non-compartment model to compartment model pharmacokinetics transformation meta-analysis - a multivariate nonlinear mixed model.
BMC Syst. Biol.
Zhiping Wang, Seongho Kim, Sara K. Quinney, Jihao Zhou, Lang Li
2009 — conf
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research.
BIBM
Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç
2009 J jnl
Literature mining on pharmacokinetics numerical data: A feasibility study.
J. Biomed. Informatics
Zhiping Wang, Seongho Kim, Sara K. Quinney, Yingying Guo, Stephen D. Hall, Luis M. Rocha, Lang Li
2008 J jnl
A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry.
Bioinform.
Changyu Shen, Zhiping Wang, Ganesh Shankar, Xiang Zhang, Lang Li
2008 J jnl
Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells.
Bioinform.
Meng Li, Hyun-il Henry Paik, Curtis Balch, Yoosung Kim, Lang Li, Tim Hui-Ming Huang, Kenneth P. Nephew, Sun Kim
2007 — conf
Identification of Transcription Factor and microRNA Binding Sites from Array-derived Gene Expression Data.
BIOCOMP
Guohua Wang, Xin Wang, Lang Li, Kenneth P. Nephew, Howard J. Edenberg, Feng Zhou, Yunlong Liu
2007 J jnl
Positive False Discovery Rate Estimate in Step-Wise Variable Selection.
Commun. Stat. Simul. Comput.
Lang Li, Siu Hui
2007 — conf
Refining Detection of RNA-Protein Binding Regions by Pyrosequencing of RNA Fragments.
BIOCOMP
Xin Wang, Guohua Wang, Changyu Shen, Lang Li, Xinguo Wang, Sean D. Mooney, Howard J. Edenberg, Jeremy Sanford, Yunlong Liu
2006 J jnl
A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
Bioinform.
Lang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew
2005 — conf
Discover True Association Rates in Multi-protein Complex Proteomics Data Sets.
CSB
Changyu Shen, Lang Li, Jake Yue Chen
2005 J jnl
Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System.
J. Comput. Biol.
Lang Li, Huidong Shi, Constantin T. Yiannoutsos, Tim Hui-Ming Huang, Kenneth P. Nephew
2004 — conf
High-throughput Protein Interactome Data: Minable or Not?
BIOKDD
Jake Yue Chen, Andrey Y. Sivachenko, Lang Li