Lana X. Garmire

20 papers C 2Misc 4Journal 11Unranked 3
YearRankTypeTitle / Venue / Authors
2024 — conf
L2 Normalization and Geodesic Distance for Enhanced Information Preservation in Visualizing High-dimensional Single-cell Sequencing Data.
BCB
Ziqi Rong, Jinpu Cai, Jiahao Qiu, Pengcheng Xu, Lana X. Garmire, Qiuyu Lian, Hongyi Xin
2024 J jnl
Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies.
CoRR
Yu-Ning Huang, Michael I. Love, Cynthia Flaire Ronkowski, Dhrithi Deshpande, Lynn M. Schriml, Annie Wong-Beringer, Barend Mons, Russell Corbett-Detig, Christopher I. Hunter, Jason H. Moore, Lana X. Garmire, T. B. K. Reddy, Winston A. Hide, Atul J. Butte, Mark D. Robinson, Serghei Mangul
2023 — conf
STADS: Spatial Transcriptomics to Aid Drug-reposition Recommendation.
BIBM
Abdullah Karaaslanli, Ziyin Huang, Yijun Guo, Lana X. Garmire, Haodong Liang
2022 J jnl
BML: a versatile web server for bipartite motif discovery.
Briefings Bioinform.
Mohammad Vahed, Majid Vahed, Lana X. Garmire
2022 J jnl
Computational Methods for Single-cell Multi-omics Integration and Alignment.
Genom. Proteom. Bioinform.
Stefan Stanojevic, Yijun Li, Aleksandar Ristivojevic, Lana X. Garmire
2022 J jnl
Emerging Artificial Intelligence Applications in Spatial Transcriptomics Analysis.
CoRR
Yijun Li, Stefan Stanojevic, Lana X. Garmire
2021 J jnl
Cox-nnet v2.0: improved neural-network-based survival prediction extended to large-scale EMR data.
Bioinform.
Di Wang, Zheng Jing, Kevin He, Lana X. Garmire
2021 J jnl
Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq Data.
Genom. Proteom. Bioinform.
Qianhui Huang, Yu Liu, Yuheng Du, Lana X. Garmire
2021 J jnl
GranatumX: A Community-engaging, Modularized, and Flexible Webtool for Single-cell Data Analysis.
Genom. Proteom. Bioinform.
David G. Garmire, Xun Zhu, Aravind Mantravadi, Qianhui Huang, Breck Yunits, Yu Liu, Thomas K. Wolfgruber, Olivier Poirion, Tianying Zhao, Cédric Arisdakessian, Stefan Stanojevic, Lana X. Garmire
2020 Misc conf
Network-Based Matching of Patients and Targeted Therapies for Precision Oncology.
PSB
Qingzhi Liu, Min Jin Ha, Rupam Bhattacharyya, Lana X. Garmire, Veerabhadran Baladandayuthapani
2020 — conf
Two-stage Neural-network based Prognosis Models using Pathological Image and Transcriptomic Data: An Application in Hepatocellular Carcinoma Patient Survival Prediction.
BIOINFORMATICS
Zhucheng Zhan, Noshad Hossenei, Olivier Poirion, Maria Westerhoff, Eun-young Choi, Travers Ching, Lana X. Garmire
2019 Misc conf
Session introduction.
PSB
Lana X. Garmire, Guo-Cheng Yuan, Rong Fan, Gene W. Yeo, John Quackenbush
2018 J jnl
Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data.
PLoS Comput. Biol.
Travers Ching, Xun Zhu, Lana X. Garmire
2018 Misc conf
Pan-cancer analysis of expressed somatic nucleotide variants in long intergenic non-coding RNA.
PSB
Travers Ching, Lana X. Garmire
2017 Misc conf
The Training of Next Generation Data Scientists in Biomedicine.
PSB
Lana X. Garmire, Stephen V. Gliske, Quynh C. Nguyen, Jonathan H. Chen, Shamim Nemati, John D. Van Horn, Jason H. Moore, Carol Shreffler, Michelle Dunn
2015 J jnl
Non-coding yet non-trivial: a review on the computational genomics of lincRNAs.
BioData Min.
Travers Ching, Jayson Masaki, Jason Weirather, Lana X. Garmire
2015 J jnl
Using epigenomics data to predict gene expression in lung cancer.
BMC Bioinform.
Jeffery Li, Travers Ching, Sijia Huang, Lana X. Garmire
2014 J jnl
A Novel Model to Combine Clinical and Pathway-Based Transcriptomic Information for the Prognosis Prediction of Breast Cancer.
PLoS Comput. Biol.
Sijia Huang, Cameron Yee, Travers Ching, Herbert Yu, Lana X. Garmire
2010 C conf
A Clustering Approach to Identify Intergenic Non-coding RNA in Mouse Macrophages.
BIBE
Lana X. Garmire, Shankar Subramaniam, David G. Garmire, Christopher K. Glass
2008 C conf
Peak-Finding Refinement in the Chip-SEQ Experiment.
CAINE
Lana X. Garmire, David G. Garmire, Chris Benner, Pang Ko, Christopher K. Glass, Shankar Subramaniam