Lachlan J. M. Coin

21 papers Journal 21
YearRankTypeTitle / Venue / Authors
2025 J jnl
Genome size estimation from long read overlaps.
Bioinform.
Michael B. Hall, Chenxi Zhou, Lachlan J. M. Coin
2024 J jnl
PLANNER: A Multi-Scale Deep Language Model for the Origins of Replication Site Prediction.
IEEE J. Biomed. Health Informatics
Cong Wang, ZhiJie He, Runchang Jia, Shirui Pan, Lachlan J. M. Coin, Jiangning Song, Fuyi Li
2023 J jnl
ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species.
Briefings Bioinform.
Ruyi Chen, Fuyi Li, Xudong Guo, Yue Bi, Chen Li, Shirui Pan, Lachlan J. M. Coin, Jiangning Song
2023 J jnl
Digerati - A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins.
Comput. Biol. Medicine
Fuyi Li, Xudong Guo, Yue Bi, Runchang Jia, Miranda E. Pitt, Shirui Pan, Shuqin Li, Robin B. Gasser, Lachlan J. M. Coin, Jiangning Song
2023 J jnl
TIMER is a Siamese neural network-based framework for identifying both general and species-specific bacterial promoters.
Briefings Bioinform.
Yan Zhu, Fuyi Li, Xudong Guo, Xiaoyu Wang, Lachlan J. M. Coin, Geoffrey I. Webb, Jiangning Song, Cangzhi Jia
2022 J jnl
Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction.
Briefings Bioinform.
Meng Zhang, Cangzhi Jia, Fuyi Li, Chen Li, Yan Zhu, Tatsuya Akutsu, Geoffrey I. Webb, Quan Zou, Lachlan J. M. Coin, Jiangning Song
2022 J jnl
DeepGenGrep: a general deep learning-based predictor for multiple genomic signals and regions.
Bioinform.
Quanzhong Liu, Honglin Fang, Xiao Wang, Miao Wang, Shuqin Li, Lachlan J. M. Coin, Fuyi Li, Jiangning Song
2022 J jnl
Nanoq: ultra-fast quality control for nanopore reads.
J. Open Source Softw.
Eike Steinig, Lachlan J. M. Coin
2022 J jnl
Positive-unlabeled learning in bioinformatics and computational biology: a brief review.
Briefings Bioinform.
Fuyi Li, Shuangyu Dong, André Leier, Meiya Han, Xudong Guo, Jing Xu, Xiaoyu Wang, Shirui Pan, Cangzhi Jia, Yang Zhang, Geoffrey I. Webb, Lachlan J. M. Coin, Chen Li, Jiangning Song
2021 J jnl
Porpoise: a new approach for accurate prediction of RNA pseudouridine sites.
Briefings Bioinform.
Fuyi Li, Xudong Guo, Peipei Jin, Jinxiang Chen, Dongxu Xiang, Jiangning Song, Lachlan J. M. Coin
2021 J jnl
Real-time resolution of short-read assembly graph using ONT long reads.
PLoS Comput. Biol.
Son Hoang Nguyen, Minh Duc Cao, Lachlan J. M. Coin
2018 J jnl
Simulating the dynamics of targeted capture sequencing with CapSim.
Bioinform.
Minh Duc Cao, Devika Ganesamoorthy, Chenxi Zhou, Lachlan J. M. Coin
2018 J jnl
npInv: accurate detection and genotyping of inversions using long read sub-alignment.
BMC Bioinform.
Haojing Shao, Devika Ganesamoorthy, Tania P. S. Duarte, Minh Duc Cao, Clive J. Hoggart, Lachlan J. M. Coin
2017 J jnl
Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode.
Bioinform.
Son Hoang Nguyen, Tania P. S. Duarte, Lachlan J. M. Coin, Minh Duc Cao
2016 J jnl
Realtime analysis and visualization of MinION sequencing data with npReader.
Bioinform.
Minh Duc Cao, Devika Ganesamoorthy, Matthew A. Cooper, Lachlan J. M. Coin
2014 J jnl
cnvOffSeq: detecting intergenic copy number variation using off-target exome sequencing data.
Bioinform.
Evangelos Bellos, Lachlan J. M. Coin
2011 J jnl
famCNV: copy number variant association for quantitative traits in families.
Bioinform.
Hariklia Eleftherohorinou, Johanna C. Andersson-Assarsson, Robin G. Walters, Julia S. El-Sayed Moustafa, Lachlan J. M. Coin, Peter Jacobson, Lena M. S. Carlsson, Alexandra I. F. Blakemore, Philippe Froguel, Andrew J. Walley, Mario Falchi
2010 J jnl
Inferring combined CNV/SNP haplotypes from genotype data.
Bioinform.
Shu-Yi Su, Julian E. Asher, Marjo-Riitta Järvelin, Philippe Froguel, Alexandra I. F. Blakemore, David J. Balding, Lachlan J. M. Coin
2010 J jnl
invertFREGENE: software for simulating inversions in population genetic data.
Bioinform.
Paul F. O'Reilly, Lachlan J. M. Coin, Clive J. Hoggart
2008 J jnl
Disease association tests by inferring ancestral haplotypes using a hidden markov model.
Bioinform.
Shu-Yi Su, David J. Balding, Lachlan J. M. Coin
2008 J jnl
Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions.
BMC Bioinform.
Shu-Yi Su, Jonathan White, David J. Balding, Lachlan J. M. Coin