Kyungsook Han - RankMe

118 papers A* 2A 4B 4Misc 17Journal 52Unranked 32

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A perturbed multilayer perceptron approach to predicting distant metastatic sites of cancer patients. Comput. Biol. Chem. Shiyang Wang, Dostonjon Mamatkarimov, Kyungsook Han
2025	J	`jnl`	Predicting Cancer Metastasis From DNA Methylation and Gene Expression Profiles. IEEE Trans. Comput. Biol. Bioinform. Shiyang Wang, Myeonghun Cho, Jiahui Kang, Kyungsook Han
2025	J	`jnl`	Predicting distant metastatic sites of cancer using perturbed correlations of miRNAs with competing endogenous RNAs. Comput. Biol. Chem. Myeonghoon Cho, Byungkyu Park, Kyungsook Han
2023	J	`jnl`	Constructing Integrative ceRNA Networks and Finding Prognostic Biomarkers in Renal Cell Carcinoma. IEEE ACM Trans. Comput. Biol. Bioinform. SeokWoo Lee, Wook Lee, Shulei Ren, Byungkyu Park, Kyungsook Han
2023	J	`jnl`	Constructing a Cancer Patient-Specific Network Based on Second-Order Partial Correlations of Gene Expression and DNA Methylation. IEEE ACM Trans. Comput. Biol. Bioinform. Wook Lee, SeokWoo Lee, Kyungsook Han
2022	J	`jnl`	A Deep Learning Model for RNA-Protein Binding Preference Prediction Based on Hierarchical LSTM and Attention Network. IEEE ACM Trans. Comput. Biol. Bioinform. Zhen Shen, Qinhu Zhang, Kyungsook Han, De-Shuang Huang
2022	J	`jnl`	A New Approach to Deriving Prognostic Gene Pairs From Cancer Patient-Specific Gene Correlation Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Byungkyu Park, Wook Lee, Kyungsook Han
2022	J	`jnl`	DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes. PLoS Comput. Biol. Siguo Wang, Qinhu Zhang, Ying He, Zhen Cui, Zhen-Hao Guo, Kyungsook Han, De-Shuang Huang
2022	J	`jnl`	Guest Editorial for Special Section on the 16th International Conference on Intelligent Computing (ICIC). IEEE ACM Trans. Comput. Biol. Bioinform. De-Shuang Huang, Kyungsook Han, Tatsuya Akutsu
2022	—	`conf`	Predicting Lymph Node Metastasis and Distant Metastasis using Differential Correlations of miRNAs and Their Target RNAs in Cancer. BIBM SeokWoo Lee, Myounghoon Cho, Wook Lee, Byungkyu Park, Kyungsook Han
2021	—	`conf`	A Method for Constructing an Integrative Network of Competing Endogenous RNAs. ICIC (3) SeokWoo Lee, Wook Lee, Shulei Ren, Kyungsook Han
2021	J	`jnl`	GeneCoNet: A web application server for constructing cancer patient-specific gene correlation networks with prognostic gene pairs. Comput. Methods Programs Biomed. Byungkyu Park, Wook Lee, Kyungsook Han
2021	J	`jnl`	Multi-Scale Capsule Network for Predicting DNA-Protein Binding Sites. IEEE ACM Trans. Comput. Biol. Bioinform. Qinhu Zhang, Wenbo Yu, Kyungsook Han, Asoke K. Nandi, De-Shuang Huang
2021	J	`jnl`	Predicting TF-DNA Binding Motifs from ChIP-seq Datasets Using the Bag-Based Classifier Combined With a Multi-Fold Learning Scheme. IEEE ACM Trans. Comput. Biol. Bioinform. Qinhu Zhang, Dailun Wang, Kyungsook Han, De-Shuang Huang
2020	J	`jnl`	Constructive Prediction of Potential RNA Aptamers for a Protein Target. IEEE ACM Trans. Comput. Biol. Bioinform. Wook Lee, Kyungsook Han
2020	J	`jnl`	Discovering protein-binding RNA motifs with a generative model of RNA sequences. Comput. Biol. Chem. Byungkyu Park, Kyungsook Han
2019	J	`jnl`	Integration of Multi-Omics Data for Gene Regulatory Network Inference and Application to Breast Cancer. IEEE ACM Trans. Comput. Biol. Bioinform. Lin Yuan, Lehang Guo, Chang-An Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
2018	—	`conf`	Constructing Gene Co-expression Networks for Prognosis of Lung Adenocarcinoma. ICIC (2) Byungkyu Park, Jinho Im, Kyungsook Han
2018	—	`conf`	Finding Potential RNA Aptamers for a Protein Target Using Sequence and Structure Features. ICIC (1) Wook Lee, Jisu Lee, Kyungsook Han
2018	—	`conf`	Finding Protein-Binding Nucleic Acid Sequences Using a Long Short-Term Memory Neural Network. ICIC (2) Jinho Im, Byungkyu Park, Kyungsook Han
2018	—	`ed.`	Intelligent Computing Methodologies - 14th International Conference, ICIC 2018, Wuhan, China, August 15-18, 2018, Proceedings, Part III ICIC (3) De-Shuang Huang, M. Michael Gromiha, Kyungsook Han, Abir Hussain
2018	J	`jnl`	Mutli-Features Prediction of Protein Translational Modification Sites. IEEE ACM Trans. Comput. Biol. Bioinform. Wenzheng Bao, Chang-An Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
2018	J	`jnl`	Sequence-Based Prediction of Putative Transcription Factor Binding Sites in DNA Sequences of Any Length. IEEE ACM Trans. Comput. Biol. Bioinform. Wook Lee, Byungkyu Park, Kyungsook Han
2017	J	`jnl`	An improved method for predicting interactions between virus and human proteins. J. Bioinform. Comput. Biol. Byungmin Kim, Saud Alguwaizani, Xiang Zhou, De-Shuang Huang, Byunkyu Park, Kyungsook Han
2017	—	`ed.`	Intelligent Computing Methodologies - 13th International Conference, ICIC 2017, Liverpool, UK, August 7-10, 2017, Proceedings, Part III ICIC (3) De-Shuang Huang, Abir Hussain, Kyungsook Han, M. Michael Gromiha
2017	J	`jnl`	Predicting protein-binding regions in RNA using nucleotide profiles and compositions. BMC Syst. Biol. Daesik Choi, Byungkyu Park, Hanju Chae, Wook Lee, Kyungsook Han
2017	J	`jnl`	miRNA-Disease Association Prediction with Collaborative Matrix Factorization. Complex. Zhen Shen, You-Hua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
2016	J	`jnl`	An efficient algorithm for planar drawing of RNA structures with pseudoknots of any type. J. Bioinform. Comput. Biol. Yanga Byun, Kyungsook Han
2016	—	`conf`	Analysis of MicroRNA and Transcription Factor Regulation. ICIC (1) Wei-Li Guo, Kyungsook Han, De-Shuang Huang
2016	J	`jnl`	GeneNetFinder2: Improved Inference of Dynamic Gene Regulatory Relations with Multiple Regulators. IEEE ACM Trans. Comput. Biol. Bioinform. Kyungsook Han, Jeonghoon Lee
2016	—	`ed.`	Intelligent Computing Methodologies - 12th International Conference, ICIC 2016, Lanzhou, China, August 2-5, 2016, Proceedings, Part III ICIC (3) De-Shuang Huang, Kyungsook Han, Abir Hussain
2016	—	`conf`	Novel Algorithm for Multiple Quantitative Trait Loci Mapping by Using Bayesian Variable Selection Regression. ICIC (3) Lin Yuan, Kyungsook Han, De-Shuang Huang
2016	J	`jnl`	PRIdictor: Protein-RNA Interaction predictor. Biosyst. Narankhuu Tuvshinjargal, Wook Lee, Byungkyu Park, Kyungsook Han
2016	—	`conf`	Predicting Transcription Factor Binding Sites in DNA Sequences Without Prior Knowledge. ICIC (1) Wook Lee, Byungkyu Park, Daesik Choi, Chungkeun Lee, Hanju Chae, Kyungsook Han
2016	—	`conf`	Prediction of Lysine Acetylation Sites Based on Neural Network. ICIC (2) Wenzheng Bao, Zhichao Jiang, Kyungsook Han, De-Shuang Huang
2016	—	`conf`	Prediction of Target Genes Based on Multiway Integration of High-Throughput Data. ICIC (1) Wei-Li Guo, Kyungsook Han, De-Shuang Huang
2015	—	`ed.`	Advanced Intelligent Computing Theories and Applications - 11th International Conference, ICIC 2015, Fuzhou, China, August 20-23, 2015. Proceedings, Part III ICIC (3) De-Shuang Huang, Kyungsook Han
2015	J	`jnl`	Assessing protein-protein interactions based on the semantic similarity of interacting proteins. Int. J. Data Min. Bioinform. Guangyu Cui, Byungmin Kim, Saud Alguwaizani, Kyungsook Han
2015	J	`jnl`	Predicting protein-binding RNA nucleotides with consideration of binding partners. Comput. Methods Programs Biomed. Narankhuu Tuvshinjargal, Wook Lee, Byungkyu Park, Kyungsook Han
2015	—	`conf`	SVM-Based Classification of Diffusion Tensor Imaging Data for Diagnosing Alzheimer's Disease and Mild Cognitive Impairment. ICIC (2) Wook Lee, Byungkyu Park, Kyungsook Han
2014	J	`jnl`	DBBP: database of binding pairs in protein-nucleic acid interactions. BMC Bioinform. Byungkyu Brian Park, Hyungchan Kim, Kyungsook Han
2014	—	`conf`	Inference of Dynamic Gene Regulatory Relations with Multiple Regulators. ICIC (3) Jeonghoon Lee, Yu Chen, Kyungsook Han
2014	—	`ed.`	Intelligent Computing in Bioinformatics - 10th International Conference, ICIC 2014, Taiyuan, China, August 3-6, 2014. Proceedings ICIC (3) De-Shuang Huang, Kyungsook Han, M. Michael Gromiha
2014	J	`jnl`	Sequence-based prediction of protein-binding sites in DNA: Comparative study of two SVM models. Comput. Methods Programs Biomed. Byungkyu Brian Park, Jinyong Im, Narankhuu Tuvshinjargal, Wook Lee, Kyungsook Han
2013	J	`jnl`	Classification of diffusion tensor images for the early detection of Alzheimer's disease. Comput. Biol. Medicine Wook Lee, Byungkyu Park, Kyungsook Han
2013	—	`conf`	Database of Protein-Nucleic Acid Binding Pairs at Atomic and Residue Levels. ICIC (3) Byungkyu Park, Hyungchan Kim, Sangmin Lee, Kyungsook Han
2013	—	`ed.`	Intelligent Computing Theories and Technology - 9th International Conference, ICIC 2013, Nanning, China, July 28-31, 2013. Proceedings ICIC (2) De-Shuang Huang, Kang-Hyun Jo, Yong-Quan Zhou, Kyungsook Han
2013	J	`jnl`	KGVDB: a population-based genomic map of CNVs tagged by SNPs in Koreans. Bioinform. Sanghoon Moon, Kwang Su Jung, Young Jin Kim, Mi Yeong Hwang, Kyungsook Han, Jong-Young Lee, Kiejung Park, Bong-Jo Kim
2013	J	`jnl`	Predicting protein-binding RNA nucleotides using the feature-based removal of data redundancy and the interaction propensity of nucleotide triplets. Comput. Biol. Medicine Sungwook Choi, Kyungsook Han
2013	—	`conf`	Scoring Protein-Protein Interactions Using the Width of Gene Ontology Terms and the Information Content of Common Ancestors. ICIC (3) Guangyu Cui, Kyungsook Han
2012	—	`ed.`	Bio-Inspired Computing and Applications - 7th International Conference on Intelligent Computing, ICIC 2011, Zhengzhou,China, August 11-14. 2011, Revised Selected Papers ICIC (3) De-Shuang Huang, Yong Gan, Prashan Premaratne, Kyungsook Han
2012	J	`jnl`	Modeling the interactions of Alzheimer-related genes from the whole brain microarray data and diffusion tensor images of human brain. BMC Bioinform. Byungkyu Park, Wook Lee, Kyungsook Han
2012	J	`jnl`	Prediction of protein-protein interactions between viruses and human by an SVM model. BMC Bioinform. Guangyu Cui, Chao Fang, Kyungsook Han
2011	—	`conf`	Connectivity Analysis of Hippocampus in Alzheimer's Brain Using Probabilistic Tractography. ICIC (3) Md. Kamrul Hasan, Wook Lee, Byungkyu Park, Kyungsook Han
2011	—	`conf`	Prediction of Human Proteins Interacting with Human Papillomavirus Proteins. ICIC (3) Guangyu Cui, Chao Fang, Kyungsook Han
2011	J	`jnl`	Prediction of RNA-binding amino acids from protein and RNA sequences. BMC Bioinform. Sungwook Choi, Kyungsook Han
2010	J	`jnl`	A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network. BMC Bioinform. Zhuhong You, Zheng Yin, Kyungsook Han, De-Shuang Huang, Xiaobo Zhou
2010	J	`jnl`	An ontology-based search engine for protein-protein interactions. BMC Bioinform. Byungkyu Park, Kyungsook Han
2010	J	`jnl`	Gene expression data classification using locally linear discriminant embedding. Comput. Biol. Medicine Bo Li, Chun-Hou Zheng, De-Shuang Huang, Lei Zhang, Kyungsook Han
2009	—	`conf`	Dynamic Identification and Visualization of Gene Regulatory Networks from Time-Series Gene Expression Profiles. ICIC (1) Yu Chen, Kyungsook Han
2009	J	`jnl`	Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting. BMC Bioinform. Jisu Kim, De-Shuang Huang, Kyungsook Han
2009	J	`jnl`	PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots. Bioinform. Yanga Byun, Kyungsook Han
2008	—	`conf`	Prediction of Binding Sites in HCV Protein Complexes Using a Support Vector Machine. ICIC (1) Taihui Yoo, Jaetak Lee, Kyungsook Han
2008	—	`conf`	Prediction of RNA-Binding Residues in Proteins Using the Interaction Propensities of Amino Acids and Nucleotides. ICIC (1) Rojan Shrestha, Jisu Kim, Kyungsook Han
2007	J	`jnl`	A general computational model for predicting ribosomal frameshifts in genome sequences. Comput. Biol. Medicine Yanga Byun, Sanghoon Moon, Kyungsook Han
2007	—	`conf`	Analysis of HCV Envelope Proteins Interacting with Human Proteins. FBIT Chirag Nepal, Kyungsook Han
2007	Misc	`conf`	Comparative Analysis of the Interaction Networks of HIV-1 and Human Proteins. International Conference on Computational Science (2) Kyungsook Han, Byungkyu Park
2007	—	`conf`	Discovering Inter-Domain Paths between Hepatitis C Virus NS5A and Human Liver Proteins. FBIT Guang-Zheng Zhang, Kyungsook Han
2007	—	`conf`	Estimating the Reliability of Protein-Protein Interactions. FBIT Byungkyu Park, Kyungsook Han
2007	J	`jnl`	FSDB: A frameshift signal database. Comput. Biol. Chem. Sanghoon Moon, Yanga Byun, Kyungsook Han
2007	J	`jnl`	Hepatitis C virus contact map prediction based on binary encoding strategy. Comput. Biol. Chem. Guang-Zheng Zhang, Kyungsook Han
2007	—	`conf`	Identifying Functional Groups by Finding Cliques and Near-Cliques in Protein Interaction Networks. FBIT Kyungsook Han, Guangyu Cui, Yu Chen
2007	Misc	`conf`	Mining Molecular Structure Data for the Patterns of Interactions Between Protein and RNA. International Conference on Computational Science (1) Kyungsook Han, Chirag Nepal
2007	—	`conf`	Multi-Layered Networks for Visualizing the Interactions between Heterogeneous Proteins. FBIT Yu Chen, Guangyu Cui, Kyungsook Han
2007	Misc	`conf`	Predicting Binding Sites of Hepatitis C Virus Complexes Using Residue Binding Propensity and Sequence Entropy. International Conference on Computational Science (1) Guang-Zheng Zhang, Chirag Nepal, Kyungsook Han
2007	—	`conf`	Prediction of Interacting Motif Pairs Using Stochastic Boosting. FBIT Jisu Kim, Byungkyu Park, Kyungsook Han
2006	Misc	`conf`	Prediction of Readthroughs Based on the Statistical Analysis of Nucleotides Around Stop Codons. International Conference on Computational Science (1) Sanghoon Moon, Yanga Byun, Kyungsook Han
2006	—	`conf`	Prediction of Ribosomal -1 Frameshifts in the ICIC (3) Sanghoon Moon, Yanga Byun, Kyungsook Han
2006	J	`jnl`	PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures. Nucleic Acids Res. Yanga Byun, Kyungsook Han
2006	Misc	`conf`	Web Service for Finding Ribosomal Frameshifts. International Conference on Computational Science (1) Yanga Byun, Sanghoon Moon, Kyungsook Han
2006	—	`conf`	Web Service for Predicting Interacting Proteins and Application to Human and HIV-1 Proteins. ICIC (3) Byungkyu Park, Kyungsook Han
2005	Misc	`conf`	A Layout Algorithm for Signal Transduction Pathways as Two-Dimensional Drawings with Spline Curves. International Conference on Computational Science (1) Donghoon Lee, Byoung-Hyun Ju, Kyungsook Han
2005	Misc	`conf`	Online Prediction of Interacting Proteins with a User-Specified Protein. International Conference on Computational Science (3) Byungkyu Park, Kyungsook Han
2005	J	`jnl`	PSIbase: a database of Protein Structural Interactome map (PSIMAP). Bioinform. Sungsam Gong, Giseok Yoon, Insoo Jang, Dan M. Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak
2005	Misc	`conf`	Prediction of Protein Interactions by the Domain and Sub-cellular Localization Information. International Conference on Computational Science (3) Jinsun Hong, Kyungsook Han
2005	Misc	`conf`	Prediction of Ribosomal Frameshift Signals of User-Defined Models. International Conference on Computational Science (1) Yanga Byun, Sanghoon Moon, Kyungsook Han
2004	Misc	`conf`	A Database Server for Predicting Protein-Protein Interactions. International Conference on Computational Science Kyungsook Han, Byungkyu Park
2004	Misc	`conf`	Computational Identification of -1 Frameshift Signals. International Conference on Computational Science Sanghoon Moon, Yanga Byun, Kyungsook Han
2004	A	`conf`	DNA Secondary Structures for Probe Design. GD Yanga Byun, Kyungsook Han
2004	—	`conf`	Dynamic Visualization of Signal Transduction Pathways from Database Information. AIS Donghoon Lee, Byoung-Hyun Ju, Kyungsook Han
2004	J	`jnl`	HPID: The Human Protein Interaction Database. Bioinform. Kyungsook Han, Byungkyu Park, Hyongguen Kim, Jinsun Hong, Jong-Chan Park
2004	Misc	`conf`	PairAnalyzer: Extracting and Visualizing RNA Structure Elements Formed by Base Pairing. International Conference on Computational Science Daeho Lim, Kyungsook Han
2004	Misc	`conf`	Prediction of Binding Sites in Protein-Nucleic Acid Complexes. International Conference on Computational Science Namshik Han, Kyungsook Han
2004	Misc	`conf`	Prediction of Protein Functions Using Protein Interaction Data. International Conference on Computational Science Haemoon Jung, Kyungsook Han
2004	J	`jnl`	Three-dimensional visualization of protein interaction networks. Comput. Biol. Medicine Kyungsook Han, Yanga Byun
2004	J	`jnl`	WebInterViewer: visualizing and analyzing molecular interaction networks. Nucleic Acids Res. Kyungsook Han, Byong-Hyon Ju, Haemoon Jung
2003	B	`conf`	A Genetic Algorithm for Inferring Pseudoknotted RNA Structures from Sequence Data. Discovery Science Dongkyu Lee, Kyungsook Han
2003	Misc	`conf`	A Genetic Algorithm for Predicting RNA Pseudoknot Structures. International Conference on Computational Science Dongkyu Lee, Kyungsook Han
2003	J	`jnl`	A fast layout algorithm for protein interaction networks. Bioinform. Kyungsook Han, Byong-Hyon Ju
2003	—	`conf`	Complexity management in visualizing protein interaction networks. ISMB (Supplement of Bioinformatics) Byong-Hyon Ju, Kyungsook Han
2003	Misc	`conf`	Computational Approach to Structural Analysis of Protein-RNA Complexes. International Conference on Computational Science Namshik Han, Hyunwoo Kim, Kyungsook Han
2003	B	`conf`	Mining RNA Structure Elements from the Structure Data of Protein-RNA Complexes. Discovery Science Daeho Lim, Kyungsook Han
2003	J	`jnl`	PSEUDOVIEWER2: visualization of RNA pseudoknots of any type. Nucleic Acids Res. Kyungsook Han, Yanga Byun
2003	B	`conf`	Predicting Protein Interactions in Human by Homologous Interactions in Yeast. PAKDD Hyongguen Kim, Jong-Chan Park, Kyungsook Han
2003	J	`jnl`	Visualization and analysis of protein interactions. Bioinform. Byong-Hyon Ju, Byungkyu Park, Jong H. Park, Kyungsook Han
2003	Misc	`conf`	Visualization of Protein-Protein Interaction Networks Using Force-Directed Layout. International Conference on Computational Science Yanga Byun, Kyungsook Han
2002	—	`conf`	A Mobile System for Extracting and Visualizing Protein-Protein Interactions. EurAsia-ICT Kyungsook Han, Hyoungguen Kim
2002	A	`conf`	A Partitioned Approach to Protein Interaction Mapping. GD Yanga Byun, Euna Jeong, Kyungsook Han
2002	A	`conf`	InterViewer: Dynamic Visualization of Protein-Protein Interactions. GD Kyungsook Han, Byong-Hyon Ju, Jong H. Park
2002	B	`conf`	New Representation and Algorithm for Drawing RNA Structure with Pseudoknots. DaWaK Yujin Lee, Wootaek Kim, Kyungsook Han
2002	A	`conf`	PseudoViewer: automatic visualization of RNA pseudoknots. ISMB Kyungsook Han, Yujin Lee, Wootaek Kim
2002	J	`jnl`	Simulation studies of the effects of user mobility on the handoff performance of mobile communications. Simul. Model. Pract. Theory Kyungsook Han
2002	—	`conf`	Visualization of RNA Pseudoknot Structures. VECPAR Wootaek Kim, Yujin Lee, Kyungsook Han
2001	—	`conf`	Web-Based Intelligent Call Center for an Intensive Care Unit. Web Intelligence Kyungsook Han, Dongkyu Lee
1999	J	`jnl`	A vector-based method for drawing RNA secondary structure. Bioinform. Kyungsook Han, Dohyung Kim, Hong-Jin Kim
1994	A*	`conf`	The Epistemology of Physical System Modeling. AAAI Kyungsook Han, Andrew Gelsey
1993	A*	`conf`	Qualitative Modeling of RNA Structure. IJCAI Kyungsook Han, Andrew Gelsey
1990	J	`jnl`	Knowledge Specification of an Expert System. IEEE Expert James R. Slagle, David A. Gardiner, Kyungsook Han