Kyle Ellrott

14 papers C 2Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
A decentralized future for the open-science databases.
CoRR
Gaurav Sharma, Viorel Munteanu, Nika Mansouri-Ghiasi, Jineta Banerjee, Susheel Varma, Luca Foschini, Kyle Ellrott, Onur Mutlu, Dumitru Ciorba, Roel A. Ophoff, Viorel Bostan, Christopher E. Mason, Jason H. Moore, Despoina Sousoni, Arunkumar Krishnan, Mihai Dimian, Gustavo Stolovitzky, Fabio G. Liberante, Taras K. Oleksyk, Serghei Mangul
2024 J jnl
The GA4GH Task Execution API: Enabling Easy Multi Cloud Task Execution.
CoRR
Alexander Kanitz, Matthew H. McLoughlin, Liam Beckman, Venkat S. Malladi, Kyle Ellrott
2024 J jnl
The GA4GH Task Execution Application Programming Interface: Enabling Easy Multicloud Task Execution.
Comput. Sci. Eng.
Alexander Kanitz, Matthew H. McLoughlin, Liam Beckman, Venkat S. Malladi, Kyle Ellrott
2020 J jnl
neoepiscope improves neoepitope prediction with multivariant phasing.
Bioinform.
Mary A. Wood, Austin Nguyen, Adam J. Struck, Kyle Ellrott, Abhinav Nellore, Reid F. Thompson
2018 J jnl
Germline contamination and leakage in whole genome somatic single nucleotide variant detection.
BMC Bioinform.
Dorota H. Sendorek, Cristian Caloian, Kyle Ellrott, J. Christopher Bare, Takafumi N. Yamaguchi, Adam D. Ewing, Kathleen E. Houlahan, Thea C. Norman, Adam A. Margolin, Joshua M. Stuart, Paul C. Boutros
2018 J jnl
Valection: design optimization for validation and verification studies.
BMC Bioinform.
Christopher I Cooper, Delia Yao, Dorota H. Sendorek, Takafumi N. Yamaguchi, Christine P'ng, Kathleen E. Houlahan, Cristian Caloian, Michael Fraser, Kyle Ellrott, Adam A. Margolin, Robert G. Bristow, Joshua M. Stuart, Paul C. Boutros
2013 J jnl
The UCSC Cancer Genomics Browser: update 2013.
Nucleic Acids Res.
Mary Goldman, Brian Craft, Teresa Swatloski, Kyle Ellrott, Melissa S. Cline, Mark Diekhans, Singer Ma, Chris Wilks, Joshua M. Stuart, David Haussler, Jingchun Zhu
2011 J jnl
TOPSAN: a dynamic web database for structural genomics.
Nucleic Acids Res.
Kyle Ellrott, Christian M. Zmasek, Dana Weekes, S. Sri Krishna, Constantina Bakolitsa, Adam Godzik, John C. Wooley
2010 J jnl
Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families.
PLoS Comput. Biol.
Kyle Ellrott, Lukasz Jaroszewski, Weizhong Li, John C. Wooley, Adam Godzik
2008 J jnl
Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays.
J. Bioinform. Comput. Biol.
Kyle Ellrott, Jun-tao Guo, Victor Olman, Ying Xu
2004 J jnl
PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction.
Nucleic Acids Res.
Jun-tao Guo, Kyle Ellrott, Won Jae Chung, Dong Xu, Sergei Passovets, Ying Xu
2003 C conf
A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale.
BIBE
Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
2003 J jnl
A computational pipeline for protein structure prediction and analysis at genome scale.
Bioinform.
Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
2002 C conf
Identifying transcription factor binding sites through Markov chain optimization.
ECCB
Kyle Ellrott, Chuhu Yang, Frances M. Sladek, Tao Jiang