Kutlu Ö. Ülgen

16 papers Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Comprehensive genome-scale metabolic model of the human pathogen Cryptococcus neoformans: A platform for understanding pathogen metabolism and identifying new drug targets.
Frontiers Bioinform.
Enes Fahri Tezcan, Yigit Demirtas, Zeynep Petek Cakar, Kutlu Ö. Ülgen
2022 J jnl
Exploiting Pretrained Biochemical Language Models for Targeted Drug Design.
CoRR
Gökçe Uludogan, Elif Özkirimli, Kutlu Ö. Ülgen, Nilgün Karali, Arzucan Özgür
2022 J jnl
Exploiting pretrained biochemical language models for targeted drug design.
Bioinform.
Gökçe Uludogan, Elif Özkirimli, Kutlu Ö. Ülgen, Nilgün Karali, Arzucan Özgür
2020 — conf
Preliminary Studies on Flow Assisted Propagation of Fluorescent Microbeads in Microfluidic Channels for Molecular Communication Systems.
BICT
Merve Gorkem Durmaz, Abdurrahman Dilmac, Berk Camli, Elif Gencturk, Zeliha Cansu Canbek Ozdil, Ali Emre Pusane, Arda Deniz Yalcinkaya, Kutlu Ö. Ülgen, Tuna Tugcu
2017 J jnl
Sphingosine kinase 1 (SK1) allosteric inhibitors that target the dimerization site.
Comput. Biol. Chem.
Ozge Bayraktar, Elif Özkirimli Ölmez, Kutlu Ö. Ülgen
2015 J jnl
Identification of potential Tpx inhibitors against pathogen-host interactions.
Comput. Biol. Chem.
Utku Deniz, Kutlu Ö. Ülgen, Elif Özkirimli Ölmez
2014 J jnl
Targeting the Akt1 allosteric site to identify novel scaffolds through virtual screening.
Comput. Biol. Chem.
Oya Gursoy Yilmaz, Elif Özkirimli Ölmez, Kutlu Ö. Ülgen
2013 J jnl
PHISTO: pathogen-host interaction search tool.
Bioinform.
Saliha Durmus Tekir, Tunahan Çakir, Emre Ardiç, Ali Semih Sayilirbas, Gökhan Konuk, Mithat Konuk, Hasret Sariyer, Azat Ugurlu, Ilknur Karadeniz, Arzucan Özgür, Fatih Erdogan Sevilgen, Kutlu Ö. Ülgen
2011 J jnl
Reconstruction and crosstalk of protein-protein interaction networks of Wnt and Hedgehog signaling in Drosophila melanogaster.
Comput. Biol. Chem.
Aysun Eren Toku, Saliha Durmus Tekir, Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen
2011 J jnl
Stoichiometric network reconstruction and analysis of yeast sphingolipid metabolism incorporating different states of hydroxylation.
Biosyst.
Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen
2010 J jnl
Drug target identification in sphingolipid metabolism by computational systems biology tools: Metabolic control analysis and metabolic pathway analysis.
J. Biomed. Informatics
Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen
2009 J jnl
Drug targets for tumorigenesis: Insights from structural analysis of EGFR signaling network.
J. Biomed. Informatics
Saliha Durmus Tekir, Kazim Yalçin Arga, Kutlu Ö. Ülgen
2007 J jnl
Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae.
BMC Syst. Biol.
Tunahan Çakir, Betül Kirdar, Z. Ilsen Önsan, Kutlu Ö. Ülgen, Jens Nielsen
2006 J jnl
Analysis of enzymopathies in the human red blood cells by constraint-based stoichiometric modeling approaches.
Comput. Biol. Chem.
Saliha Durmus Tekir, Tunahan Çakir, Kutlu Ö. Ülgen
2006 J jnl
Integrative investigation of metabolic and transcriptomic data.
BMC Bioinform.
Pinar Pir, Betül Kirdar, Andrew Hayes, Z. Ilsen Önsan, Kutlu Ö. Ülgen, Stephen G. Oliver
2005 J jnl
Modelling of calcium dynamics in brain energy metabolism and Alzheimer's disease.
Comput. Biol. Chem.
S. Tiveci, Ata Akin, Tunahan Çakir, H. Saybasili, Kutlu Ö. Ülgen