Kuo Yang - RankMe

36 papers A* 1Journal 21Unranked 14

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	CPOne: Enhancing Prediction of Compound-Protein Interactions Through One-Shot Meta Learning. IEEE Trans. Comput. Biol. Bioinform. Kuan Xu, Kuo Yang, Chongyu Wang, Xinyan Wang, Hanyu Yuan, Qiang Zhu, Jian Yu, Xuezhong Zhou
2025	—	`conf`	Cross-Domain Multi-Modal Transfer Learning for Target Identification of TCM's Compounds. BIBM Huan Gu, Xunpeng Xiao, Yuling Wang, Chongyu Wang, Kuo Yang, Xuezhong Zhou
2025	A*	`conf`	KGCRR: An Effective Metric-Driven Knowledge Graph Completion Framework by Designing a Novel Upper Bound Function with Adaptive Approximation to Reciprocal Rank. AAAI Kuan Xu, Kuo Yang, Jian Liu, Xiangkui Lu, Jun Wu, Xuezhong Zhou
2025	—	`conf`	PresRecSKG: Enhancing Herbal Prescription Recommendation via Knowledge Graph-Guided Data Augmentation. BIBM Xin Dong, Jiahe Liu, Kuo Yang, Xuezhong Zhou
2024	—	`conf`	Benchmarking Biomedical Relation Knowledge in Large Language Models. ISBRA (2) Fenghui Zhang, Kuo Yang, Chenqian Zhao, Haixu Li, Xin Dong, Haoyu Tian, Xuezhong Zhou
2024	J	`jnl`	DAPNet: multi-view graph contrastive network incorporating disease clinical and molecular associations for disease progression prediction. BMC Medical Informatics Decis. Mak. Haoyu Tian, Xiong He, Kuo Yang, Xinyu Dai, Yiming Liu, Fengjin Zhang, Zixin Shu, Qiguang Zheng, Shihua Wang, Jianan Xia, Tiancai Wen, Baoyan Liu, Jian Yu, Xuezhong Zhou
2024	J	`jnl`	DrugRepPT: a deep pretraining and fine-tuning framework for drug repositioning based on drug's expression perturbation and treatment effectiveness. Bioinform. Shuyue Fan, Kuo Yang, Kezhi Lu, Xin Dong, Xianan Li, Qiang Zhu, Shao Li, Jianyang Zeng, Xuezhong Zhou
2024	J	`jnl`	HTINet2: herb-target prediction via knowledge graph embedding and residual-like graph neural network. Briefings Bioinform. Pengbo Duan, Kuo Yang, Xin Su, Shuyue Fan, Xin Dong, Fenghui Zhang, Xianan Li, Xiaoyan Xing, Qiang Zhu, Jian Yu, Xuezhong Zhou
2024	J	`jnl`	KDGene: knowledge graph completion for disease gene prediction using interactional tensor decomposition. Briefings Bioinform. Xinyan Wang, Kuo Yang, Ting Jia, Fanghui Gu, Chongyu Wang, Kuan Xu, Zixin Shu, Jianan Xia, Qiang Zhu, Xuezhong Zhou
2024	—	`conf`	LMDTA: Molecular Pre-trained and Interaction Fine-tuned Attention Neural Network for Drug-Target Affinity Prediction. BIBM Minjie Hu, Kuo Yang, Kuan Xu, Xuezhong Zhou
2024	—	`conf`	PresRecCD: A Novel Herbal Prescription Recommendation Framework with Cross-Domain Learning and Neural Collaborative Filtering. BIBM Wansong Zhang, Xin Dong, Kuo Yang, Lei Zhang, Xinyu Wang, Rouye Huang, Runshun Zhang, Xuezhong Zhou
2024	J	`jnl`	PresRecST: a novel herbal prescription recommendation algorithm for real-world patients with integration of syndrome differentiation and treatment planning. J. Am. Medical Informatics Assoc. Xin Dong, Chenxi Zhao, Xinpeng Song, Lei Zhang, Yu Liu, Jun Wu, Yiran Xu, Ning Xu, Jialing Liu, Haibin Yu, Kuo Yang, Xuezhong Zhou
2023	J	`jnl`	A Pre-training Framework for Knowledge Graph Completion. CoRR Kuan Xu, Kuo Yang, Hanyang Dong, Xinyan Wang, Xuezhong Zhou
2023	J	`jnl`	A optimization framework for herbal prescription planning based on deep reinforcement learning. CoRR Kuo Yang, Zecong Yu, Xin Su, Xiong He, Ning Wang, Qiguang Zheng, Feidie Yu, Zhuang Liu, Tiancai Wen, Xuezhong Zhou
2023	—	`conf`	Analysis of the effect of the interaction between medical and comorbidities on hospital readmission in patients with rheumatoid arthritis based on case data. BIBM Lifeng Fa, Kuo Yang, Jinlong Yu, Ning Xu, Zhenzhen Han, Hongtao Guo, Lei Zhang
2023	—	`conf`	Application of constraint-based frequent closed itemsets Mining in TCM Clinical data Analysis. BIBM Jinlong Yu, Lei Zhang, Ning Xu, Lifeng Fa, Kuo Yang
2023	J	`jnl`	DRONet: effectiveness-driven drug repositioning framework using network embedding and ranking learning. Briefings Bioinform. Kuo Yang, Yuxia Yang, Shuyue Fan, Jianan Xia, Qiguang Zheng, Xin Dong, Jun Liu, Qiong Liu, Lei Lei, Yingying Zhang, Bing Li, Zhuye Gao, Runshun Zhang, Baoyan Liu, Zhong Wang, Xuezhong Zhou
2023	J	`jnl`	DrugAI: a multi-view deep learning model for predicting drug-target activating/inhibiting mechanisms. Briefings Bioinform. Siqin Zhang, Kuo Yang, Zhenhong Liu, Xinxing Lai, Zhen Yang, Jianyang Zeng, Shao Li
2023	J	`jnl`	Knowledge Graph Completion based on Tensor Decomposition for Disease Gene Prediction. CoRR Xinyan Wang, Ting Jia, Chongyu Wang, Kuan Xu, Zixin Shu, Kuo Yang, Xuezhong Zhou
2023	J	`jnl`	SympGAN: A systematic knowledge integration system for symptom-gene associations network. Knowl. Based Syst. Kezhi Lu, Kuo Yang, Hailong Sun, Qian Zhang, Qiguang Zheng, Kuan Xu, Jianxin Chen, Xuezhong Zhou
2022	J	`jnl`	Decoding multilevel relationships with the human tissue-cell-molecule network. Briefings Bioinform. Siyu Hou, Peng Zhang, Kuo Yang, Lan Wang, Changzheng Ma, Yanda Li, Shao Li
2022	J	`jnl`	Link Prediction based on Tensor Decomposition for the Knowledge Graph of COVID-19 Antiviral Drug. Data Intell. Ting Jia, Yuxia Yang, Xi Lu, Qiang Zhu, Kuo Yang, Xuezhong Zhou
2022	J	`jnl`	PDGNet: Predicting Disease Genes Using a Deep Neural Network With Multi-View Features. IEEE ACM Trans. Comput. Biol. Bioinform. Kuo Yang, Yi Zheng, Kezhi Lu, Kai Chang, Ning Wang, Zixin Shu, Jian Yu, Baoyan Liu, Zhuye Gao, Xuezhong Zhou
2022	—	`conf`	RESurv: A Deep Survival Analysis Model to Reveal Population Heterogeneity by Individual Risk. BIBM Qiguang Zheng, Qifan Shen, Xin Su, Kuo Yang, Zixin Shu, Xuezhong Zhou
2021	—	`conf`	Phenonizer: A fine-grained phenotypic named entity recognizer for Chinese clinical texts. BIBM Qunsheng Zou, Kuo Yang, Kai Chang, Xiaoping Zhang, Xiaodong Li, Xuezhong Zhou
2021	—	`conf`	TCMPR: TCM Prescription recommendation based on subnetwork term mapping and deep learning. BIBM Xin Dong, Yi Zheng, Zixin Shu, Kai Chang, Dengying Yan, Jianan Xia, Qiang Zhu, Kunyu Zhong, Xinyan Wang, Kuo Yang, Xuezhong Zhou
2020	J	`jnl`	Disease phenotype synonymous prediction through network representation learning from PubMed database. Artif. Intell. Medicine Shiwen Ma, Kuo Yang, Ning Wang, Qiang Zhu, Zhuye Gao, Runshun Zhang, Baoyan Liu, Xuezhong Zhou
2020	J	`jnl`	Integrated network analysis of symptom clusters across disease conditions. J. Biomed. Informatics Kezhi Lu, Kuo Yang, Edouard Niyongabo, Zixin Shu, Jingjing Wang, Kai Chang, Qunsheng Zou, Jiyue Jiang, Caiyan Jia, Baoyan Liu, Xuezhong Zhou
2020	—	`conf`	Network-based gene prediction for TCM symptoms. BIBM Yinyan Wang, Kuo Yang, Zixin Shu, Dengying Yan, Xuezhong Zhou
2019	J	`jnl`	HerGePred: Heterogeneous Network Embedding Representation for Disease Gene Prediction. IEEE J. Biomed. Health Informatics Kuo Yang, Ruyu Wang, Guangming Liu, Zixin Shu, Ning Wang, Runshun Zhang, Jian Yu, Jianxin Chen, Xiaodong Li, Xuezhong Zhou
2019	J	`jnl`	SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping. Nucleic Acids Res. Yang Wu, Feilong Zhang, Kuo Yang, Shuangsang Fang, Dechao Bu, Hui Li, Liang Sun, Hairuo Hu, Kuo Gao, Wei Wang, Xuezhong Zhou, Yi Zhao, Jianxin Chen
2018	J	`jnl`	Heterogeneous network embedding for identifying symptom candidate genes. J. Am. Medical Informatics Assoc. Kuo Yang, Ning Wang, Guangming Liu, Ruyu Wang, Jian Yu, Runshun Zhang, Jianxin Chen, Xuezhong Zhou
2018	J	`jnl`	Heterogeneous network propagation for herb target identification. BMC Medical Informatics Decis. Mak. Kuo Yang, Guangming Liu, Ning Wang, Runshun Zhang, Jian Yu, Jianxin Chen, Xuezhong Zhou
2017	—	`conf`	Overlapping Functional Modules Detection in PPI Network with Pairwise Constrained Nonnegative Matrix Tri-Factorization. BCB Guangming Liu, Bianfang Chai, Kuo Yang, Xuezhong Zhou, Jian Yu
2016	—	`conf`	Similarity-based algorithms for Disease Terminology Mapping. BIBM Shiwen Ma, Kuo Yang, Xuezhong Zhou, Xue Xu, Wenwen Liu
2015	—	`conf`	Integrating herb effect similarity for network-based herb target prediction. BMEI Kuo Yang, Xuezhong Zhou, Runshun Zhang, Baoyan Liu, Lei Lei, Xiaoping Zhang, Hongwei Chu, Changkai Sun, Zhuye Gao, Hao Xu