Kun Huang - RankMe

122 papers A* 6A 1B 2C 1Misc 12Journal 69Unranked 31

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Leveraging transcription factor physical proximity for enhancing gene regulation inference. Bioinform. Xiaoqing Huang, Aamir R. Hullur, Elham Jafari, Kaushik Shridhar, Mu Zhou, Kenneth MacKie, Kun Huang, Yijie Wang
2024	J	`jnl`	Environment Scan of Generative AI Infrastructure for Clinical and Translational Science. CoRR Betina Idnay, Zihan Xu, William G. Adams, Mohammad Adibuzzaman, Nicholas R. Anderson, Neil Bahroos, Douglas S. Bell, Cody Bumgardner, Thomas R. Campion Jr., Victor M. Castro, James J. Cimino, I. Glenn Cohen, David A. Dorr, Peter L. Elkin, Jungwei W. Fan, Todd Ferris, David J. Foran, David A. Hanauer, Mike Hogarth, Kun Huang, Jayashree Kalpathy-Cramer, Manoj Kandpal, Niranjan S. Karnik, Avnish Katoch, Albert M. Lai, Christophe G. Lambert, Lang Li, Christopher J. Lindsell, Jinze Liu, Zhiyong Lu, Yuan Luo, Peter McGarvey, Eneida A. Mendonça, Parsa Mirhaji, Shawn N. Murphy, John D. Osborne, Ioannis Ch. Paschalidis, Paul A. Harris, Fred W. Prior, Nicholas J. Shaheen, Nawar Shara, Ida Sim, Umberto Tachinardi, Lemuel R. Waitman, Rosalind J. Wright, Adrian H. Zai, Kai Zheng, Sandra Soo-Jin Lee, Bradley A. Malin, Karthik Natarajan, W. Nicholson Price, Rui Zhang, Yiye Zhang, Hua Xu, Jiang Bian, Chunhua Weng, Yifan Peng
2022	J	`jnl`	A Deep Language Model for Symptom Extraction From Clinical Text and its Application to Extract COVID-19 Symptoms From Social Media. IEEE J. Biomed. Health Informatics Xiao Luo, Priyanka Gandhi, Susan Storey, Kun Huang
2022	J	`jnl`	Application of unsupervised deep learning algorithms for identification of specific clusters of chronic cough patients from EMR data. BMC Bioinform. Wei Shao, Xiao Luo, Zuoyi Zhang, Zhi Han, Vasu Chandrasekaran, Vladimir Turzhitsky, Vishal Bali, Anna R. Roberts, Megan Metzger, Jarod Baker, Carmen La Rosa, Jessica Weaver, Paul Richard Dexter, Kun Huang
2022	J	`jnl`	Artificial Intelligence in Omics. Genom. Proteom. Bioinform. Feng Gao, Kun Huang, Yi Xing
2022	—	`conf`	Identify Consistent Imaging Genomic Biomarkers for Characterizing the Survival-Associated Interactions Between Tumor-Infiltrating Lymphocytes and Tumors. MICCAI (2) Yingli Zuo, Yawen Wu, Zixiao Lu, Qi Zhu, Kun Huang, Daoqiang Zhang, Wei Shao
2022	J	`jnl`	SPCS: a spatial and pattern combined smoothing method for spatial transcriptomic expression. Briefings Bioinform. Yusong Liu, Tongxin Wang, Ben Duggan, Michael F. Sharpnack, Kun Huang, Jie Zhang, Xiufen Ye, Travis S. Johnson
2022	J	`jnl`	TSAFinder: exhaustive tumor-specific antigen detection with RNAseq. Bioinform. Michael F. Sharpnack, Travis S. Johnson, Robert Chalkley, Zhi Han, David Carbone, Kun Huang, Kai He
2021	J	`jnl`	A Computational Framework to Analyze the Associations Between Symptoms and Cancer Patient Attributes Post Chemotherapy Using EHR Data. IEEE J. Biomed. Health Informatics Xiao Luo, Priyanka Gandhi, Susan Storey, Zuoyi Zhang, Zhi Han, Kun Huang
2021	J	`jnl`	Analyzing the symptoms in colorectal and breast cancer patients with or without type 2 diabetes using EHR data. Health Informatics J. Xiao Luo, Susan Storey, Priyanka Gandhi, Zuoyi Zhang, Megan Metzger, Kun Huang
2021	J	`jnl`	Applying interpretable deep learning models to identify chronic cough patients using EHR data. Comput. Methods Programs Biomed. Xiao Luo, Priyanka Gandhi, Zuoyi Zhang, Wei Shao, Zhi Han, Vasu Chandrasekaran, Vladimir Turzhitsky, Vishal Bali, Anna R. Roberts, Megan Metzger, Jarod Baker, Carmen La Rosa, Jessica Weaver, Paul Richard Dexter, Kun Huang
2021	Misc	`conf`	PASC CKD: revealing the progression trajectories of sustained COVID-19-related renal injury using real-world evidence. AMIA Jing Su, Pengyue Zhang, Zuoyi Zhang, Michael Eadon, Xiaochun Li, Tian He, Stanley Taylor, Travis Johnson, Zhaorui Liu, Ziyang Tang, Baijian Yang, Qianqian Song, Kun Huang
2021	J	`jnl`	TPSC: a module detection method based on topology potential and spectral clustering in weighted networks and its application in gene co-expression module discovery. BMC Bioinform. Yusong Liu, Xiufen Ye, Christina Y. Yu, Wei Shao, Jie Hou, Weixing Feng, Jie Zhang, Kun Huang
2021	J	`jnl`	TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining. Genom. Proteom. Bioinform. Zhi Huang, Zhi Han, Tongxin Wang, Wei Shao, Shunian Xiang, Paul Salama, Maher E. Rizkalla, Kun Huang, Jie Zhang
2021	A	`conf`	Towards Fair Cross-Domain Adaptation via Generative Learning. WACV Tongxin Wang, Zhengming Ding, Wei Shao, Haixu Tang, Kun Huang
2021	A*	`conf`	Transfer Learning via Optimal Transportation for Integrative Cancer Patient Stratification. IJCAI Ziyu Liu, Wei Shao, Jie Zhang, Min Zhang, Kun Huang
2021	J	`jnl`	Weakly Supervised Deep Ordinal Cox Model for Survival Prediction From Whole-Slide Pathological Images. IEEE Trans. Medical Imaging Wei Shao, Tongxin Wang, Zhi Huang, Zhi Han, Jie Zhang, Kun Huang
2020	J	`jnl`	AI in Medical Imaging Informatics: Current Challenges and Future Directions. IEEE J. Biomed. Health Informatics Andreas S. Panayides, Amir A. Amini, Nenad D. Filipovic, Ashish Sharma, Sotirios A. Tsaftaris, Alistair A. Young, David J. Foran, Nhan Do, Spyretta Golemati, Tahsin M. Kurç, Kun Huang, Konstantina S. Nikita, Ben P. Veasey, Michalis E. Zervakis, Joel H. Saltz, Constantinos S. Pattichis
2020	J	`jnl`	Image saliency detection via multi-scale iterative CNN. Vis. Comput. Kun Huang, Shenghua Gao
2020	J	`jnl`	Integrative Analysis of Pathological Images and Multi-Dimensional Genomic Data for Early-Stage Cancer Prognosis. IEEE Trans. Medical Imaging Wei Shao, Kun Huang, Zhi Han, Jun Cheng, Liang Cheng, Tongxin Wang, Liang Sun, Zixiao Lu, Jie Zhang, Daoqiang Zhang
2020	J	`jnl`	Learning to Parse Wireframes in Images of Man-Made Environments. CoRR Kun Huang, Yifan Wang, Zihan Zhou, Tianjiao Ding, Shenghua Gao, Yi Ma
2020	J	`jnl`	Low-Rank Reorganization via Proportional Hazards Non-negative Matrix Factorization Unveils Survival Associated Gene Clusters. CoRR Zhi Huang, Paul Salama, Wei Shao, Jie Zhang, Kun Huang
2020	—	`conf`	Microsatellite Instability Prediction of Uterine Corpus Endometrial Carcinoma Based on H&E Histology Whole-Slide Imaging. ISBI Tongxin Wang, Weijia Lu, Fan Yang, Li Liu, Zhongyi Dong, Weimin Tang, Jia Chang, Wenjing Huan, Kun Huang, Jianhua Yao
2020	J	`jnl`	Multi-task multi-modal learning for joint diagnosis and prognosis of human cancers. Medical Image Anal. Wei Shao, Tongxin Wang, Liang Sun, Tianhan Dong, Zhi Han, Zhi Huang, Jie Zhang, Daoqiang Zhang, Kun Huang
2020	Misc	`conf`	PTR Explorer: An approach to identify and explore Post Transcriptional Regulatory mechanisms usingproteogenomics. PSB Arunima Srivastava, Michael F. Sharpnack, Kun Huang, Parag Mallick, Raghu Machiraju
2020	J	`jnl`	Towards Fair Cross-Domain Adaptation via Generative Learning. CoRR Tongxin Wang, Zhengming Ding, Wei Shao, Haixu Tang, Kun Huang
2019	J	`jnl`	A protocol to evaluate RNA sequencing normalization methods. BMC Bioinform. Zachary B. Abrams, Travis S. Johnson, Kun Huang, Philip R. O. Payne, Kevin R. Coombes
2019	J	`jnl`	Capturing variations in nuclear phenotypes. J. Comput. Sci. Sundaresan Raman, Shantanu Singh, Thierry Pécot, Enrico Caserta, Kun Huang, Jens Rittscher, Gustavo Leone, Raghu Machiraju
2019	—	`conf`	Diagnosis-Guided Multi-modal Feature Selection for Prognosis Prediction of Lung Squamous Cell Carcinoma. MICCAI (4) Wei Shao, Tongxin Wang, Zhi Huang, Jun Cheng, Zhi Han, Daoqiang Zhang, Kun Huang
2019	J	`jnl`	Generalized gene co-expression analysis via subspace clustering using low-rank representation. BMC Bioinform. Tongxin Wang, Jie Zhang, Kun Huang
2019	—	`conf`	Identifying Symptom Clusters in Breast Cancer and Colorectal Cancer Patients using EHR Data. BCB Priyanka Gandhi, Xiao Luo, Susan Storey, Zuoyi Zhang, Zhi Han, Kun Huang
2019	J	`jnl`	Integrative cancer patient stratification via subspace merging. Bioinform. Hao Ding, Michael F. Sharpnack, Chao Wang, Kun Huang, Raghu Machiraju
2019	J	`jnl`	LAmbDA: label ambiguous domain adaptation dataset integration reduces batch effects and improves subtype detection. Bioinform. Travis S. Johnson, Tongxin Wang, Zhi Huang, Christina Y. Yu, Yi Wu, Yatong Han, Yan Zhang, Kun Huang, Jie Zhang
2019	A*	`conf`	PPGNet: Learning Point-Pair Graph for Line Segment Detection. CVPR Ziheng Zhang, Zhengxin Li, Ning Bi, Jia Zheng, Jinlei Wang, Kun Huang, Weixin Luo, Yanyu Xu, Shenghua Gao
2019	J	`jnl`	PPGNet: Learning Point-Pair Graph for Line Segment Detection. CoRR Ziheng Zhang, Zhengxin Li, Ning Bi, Jia Zheng, Jinlei Wang, Kun Huang, Weixin Luo, Yanyu Xu, Shenghua Gao
2019	Misc	`conf`	Topological Methods for Visualization and Analysis of High Dimensional Single-Cell RNA Sequencing Data. PSB Tongxin Wang, Travis S. Johnson, Jie Zhang, Kun Huang
2019	J	`jnl`	Wireframe Parsing With Guidance of Distance Map. IEEE Access Kun Huang, Shenghua Gao
2018	Misc	`conf`	Building trans-omics evidence: using imaging and 'omics' to characterize cancer profiles. PSB Arunima Srivastava, Chaitanya Kulkarni, Parag Mallick, Kun Huang, Raghu Machiraju
2018	Misc	`conf`	Genetic Mutations Associated with Histopathology Changes in Kidney Cancer. AMIA Jun Cheng, Zhi Han, Qianjin Feng, Liang Cheng, Jie Zhang, Kun Huang
2018	J	`jnl`	Identification of topological features in renal tumor microenvironment associated with patient survival. Bioinform. Jun Cheng, Xiaokui Mo, Xusheng Wang, Anil Parwani, Qianjin Feng, Kun Huang
2018	A*	`conf`	Learning to Parse Wireframes in Images of Man-Made Environments. CVPR Kun Huang, Yifan Wang, Zihan Zhou, Tianjiao Ding, Shenghua Gao, Yi Ma
2018	Misc	`conf`	Network analysis of pseudogene-gene relationships: from pseudogene evolution to their functional potentials. PSB Travis S. Johnson, Sihong Li, Jonathan R. Kho, Kun Huang, Yan Zhang
2018	—	`conf`	Ordinal Multi-modal Feature Selection for Survival Analysis of Early-Stage Renal Cancer. MICCAI (2) Wei Shao, Jun Cheng, Liang Sun, Zhi Han, Qianjin Feng, Daoqiang Zhang, Kun Huang
2018	Misc	`conf`	Session introduction. PSB Heng Huang, Li Shen, Paul M. Thompson, Kun Huang, Junzhou Huang, Lin Yang
2018	J	`jnl`	annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq. Bioinform. Xing Tang, Arunima Srivastava, Huayang Liu, Raghu Machiraju, Kun Huang, Gustavo Leone
2017	Misc	`conf`	Integrative Analysis for Lung Adenocarcinoma Predicts Morphological Features Associated with Genetic Variations. PSB Chao Wang, Hai Su, Lin Yang, Kun Huang
2017	Misc	`conf`	Mapping Neuronal Cell Types Using Integrative Multi-Species Modeling of Human and Mouse Single Cell RNA Sequencing. PSB Travis S. Johnson, Zachary B. Abrams, Yan Zhang, Kun Huang
2017	Misc	`conf`	Open Data for Discovery Science. PSB Philip R. O. Payne, Kun Huang, Nigam H. Shah, Jessica D. Tenenbaum
2017	J	`jnl`	Predictive models for pressure ulcers from intensive care unit electronic health records using Bayesian networks. BMC Medical Informatics Decis. Mak. Pacharmon Kaewprag, Cheryl Newton, Brenda Vermillion, Sookyung Hyun, Kun Huang, Raghu Machiraju
2017	—	`conf`	Spatiotemporal Visualization of Gene Expression in the Developing Mouse Brain. EuroVis (Short Papers) Qihang Li, Kun Huang, Raghu Machiraju
2017	J	`jnl`	annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq. Bioinform. Xing Tang, Arunima Srivastava, Huayang Liu, Raghu Machiraju, Kun Huang, Gustavo Leone
2016	J	`jnl`	Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types. BMC Bioinform. Nan Meng, Raghu Machiraju, Kun Huang
2016	J	`jnl`	Precision Medicine: What Challenges Are We Facing? Genom. Proteom. Bioinform. Yu Xue, Eric-Wubbo Lameijer, Kai Ye, Kunlin Zhang, Suhua Chang, Xiaoyue Wang, Jianmin Wu, Ge Gao, Fangqing Zhao, Jian Li, Chunsheng Han, Shuhua Xu, Jing-Fa Xiao, Xuerui Yang, Xiaomin Ying, Xuegong Zhang, Wei-Hua Chen, Yun Liu, Zhang Zhang, Kun Huang, Jun Yu
2016	Misc	`conf`	Session Introduction. PSB Kelly Regan, Zachary B. Abrams, Michael F. Sharpnack, Arunima Srivastava, Kun Huang, Nigam Shah, Philip R. O. Payne
2016	J	`jnl`	Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes. PLoS Comput. Biol. Jie Wang, Shuli Xia, Brian Arand, Heng Zhu, Raghu Machiraju, Kun Huang, Hongkai Ji, Jiang Qian
2015	J	`jnl`	GRAPHIE: graph based histology image explorer. BMC Bioinform. Hao Ding, Chao Wang, Kun Huang, Raghu Machiraju
2015	J	`jnl`	Guest Editors Introduction to the Special Issue on Software and Databases. IEEE ACM Trans. Comput. Biol. Bioinform. Dong Xu, Kun Huang, Jeanette Schmidt
2015	J	`jnl`	Identify Critical Genes in Development with Consistent H3K4me2 Patterns across Multiple Tissues. IEEE ACM Trans. Comput. Biol. Bioinform. Nan Meng, Raghu Machiraju, Kun Huang
2015	—	`conf`	MICA: MicroRNA integration for active module discovery. BCB Ayat Hatem, Kamer Kaya, Jeffrey D. Parvin, Kun Huang, Ümit V. Çatalyürek
2014	J	`jnl`	2013 IEEE Scientific Visualization Contest Winner: Observing Genomics and Phenotypical Patterns in the Developing Mouse Brain. IEEE Computer Graphics and Applications Qihang Li, Gabriel Zachmann, David Feng, Kun Huang, Raghu Machiraju
2014	—	`conf`	Mining massive SNP data for identifying associated SNPs and uncovering gene relationships. BCB Amy Webb, Aaron Albin, Zhan Ye, Majid Rastegar-Mojarad, Kun Huang, Jeffrey D. Parvin, Wolfgang Sadee, Lang Li, Simon M. Lin, Yang Xiang
2014	J	`jnl`	Visualizing Multidimensional Data with Glyph SPLOMs. Comput. Graph. Forum A. Yates, Amy Webb, Michael F. Sharpnack, H. Chamberlin, Kun Huang, Raghu Machiraju
2014	J	`jnl`	iGPSe: A Visual Analytic System for Integrative Genomic Based Cancer Patient Stratification. CoRR Hao Ding, Chao Wang, Kun Huang, Raghu Machiraju
2014	J	`jnl`	iGPSe: A visual analytic system for integrative genomic based cancer patient stratification. BMC Bioinform. Hao Ding, Chao Wang, Kun Huang, Raghu Machiraju
2013	J	`jnl`	Gene co-expression analysis predicts genetic aberration loci associated with colon cancer metastasis. Int. J. Comput. Biol. Drug Des. Jie Zhang, Shiwei Ni, Yang Xiang, Jeffrey D. Parvin, Yufeng Yang, Yongjian Zhou, Kun Huang
2013	J	`jnl`	Identify condition-specific gene co-expression networks. Int. J. Comput. Biol. Drug Des. Vikram Kalluru, Raghu Machiraju, Kun Huang
2013	J	`jnl`	Research and applications: Identifying survival associated morphological features of triple negative breast cancer using multiple datasets. J. Am. Medical Informatics Assoc. Chao Wang, Thierry Pécot, Debra L. Zynger, Raghu Machiraju, Charles L. Shapiro, Kun Huang
2012	J	`jnl`	A dynamic time order network for time-series gene expression data analysis. BMC Syst. Biol. Pengyue Zhang, Raphaël Mourad, Yang Xiang, Kun Huang, Tim Hui-Ming Huang, Kenneth P. Nephew, Yunlong Liu, Lang Li
2012	J	`jnl`	A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data. BMC Bioinform. Zhi Han, Lu Tian, Thierry Pécot, Tim Hui-Ming Huang, Raghu Machiraju, Kun Huang
2012	J	`jnl`	Merging network patterns: a general framework to summarize biomedical network data. Netw. Model. Anal. Health Informatics Bioinform. Yang Xiang, David Fuhry, Kamer Kaya, Ruoming Jin, Ümit V. Çatalyürek, Kun Huang
2012	—	`conf`	Non parametric cell nuclei segmentation based on a tracking over depth from 3D fluorescence confocal images. ISBI Thierry Pécot, Shantanu Singh, Enrico Caserta, Kun Huang, Raghu Machiraju, Gustavo Leone
2012	J	`jnl`	Transactional Database Transformation and Its Application in Prioritizing Human Disease Genes. IEEE ACM Trans. Comput. Biol. Bioinform. Yang Xiang, Philip R. O. Payne, Kun Huang
2012	—	`conf`	Visualizing Clusters in Parallel Coordinates for Visual Knowledge Discovery. PAKDD (1) Yang Xiang, David Fuhry, Ruoming Jin, Ye Zhao, Kun Huang
2012	J	`jnl`	Weighted Frequent Gene Co-expression Network Mining to Identify Genes Involved in Genome Stability. PLoS Comput. Biol. Jie Zhang, Kewei Lu, Yang Xiang, Muhtadi Islam, Shweta Kotian, Zeina Kais, Cindy Lee, Mansi Arora, Hui-wen Liu, Jeffrey D. Parvin, Kun Huang
2012	J	`jnl`	k-Neighborhood decentralization: A comprehensive solution to index the UMLS for large scale knowledge discovery. J. Biomed. Informatics Yang Xiang, Kewei Lu, Stephen L. James, Tara Borlawsky, Kun Huang, Philip R. O. Payne
2011	—	`conf`	Acceleration of Two Point Correlation Function Calculation for Pathology Image Segmentation. HISB Lee A. D. Cooper, Joel H. Saltz, Ümit V. Çatalyürek, Kun Huang
2011	—	`conf`	Chromatin signature analysis and prediction of genome-wide novel promoters using finite mixture model. GENSiPS Cenny Taslim, Shili Lin, Kun Huang, Tim Hui-Ming Huang
2011	J	`jnl`	Comparing Multiple Chip-Sequencing Experiments. J. Bioinform. Comput. Biol. Hatice Gulcin Ozer, Yi-Wen Huang, Jiejun Wu, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang
2011	—	`conf`	Detecting cellular events in brain cortex using time-lapse microscopy. ISBI Liya Ding, Kun Huang, C. Ryan Insolera, Song-Hai Shi
2011	—	`conf`	Identifying smoking associated gene co-expression networks related to oral cancer initiation. BIBM Workshops Jie Zhang, Thomas Knobloch, Jeffrey D. Parvin, Christopher Weghorst, Kun Huang
2011	—	`conf`	Non-parametric Population Analysis of Cellular Phenotypes. MICCAI (2) Shantanu Singh, Firdaus Janoos, Thierry Pécot, Enrico Caserta, Kun Huang, Jens Rittscher, Gustavo Leone, Raghu Machiraju
2011	—	`conf`	Parallel Automatic Registration of Large Scale Microscopic Images on Multiprocessor CPUs and GPUs. IPDPS Workshops Lee Cooper, Kun Huang, Manuel Ujaldon
2011	—	`conf`	Predicting Parkinson's disease related genes using frequent gene co-expression analysis. BIBM Workshops Jie Zhang, Shiwei Ni, Jeffrey D. Parvin, Yufeng Yang, Kun Huang
2010	J	`jnl`	Multi-dimensional discovery of biomarker and phenotype complexes. BMC Bioinform. Philip R. O. Payne, Kun Huang, Kristin Keen-Circle, Abhisek Kundu, Jie Zhang, Tara Borlawsky
2010	—	`conf`	Two-point correlation as a feature for histology images: Feature space structure and correlation updating. CVPR Workshops Lee Cooper, Joel H. Saltz, Raghu Machiraju, Kun Huang
2010	J	`jnl`	Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia. BMC Bioinform. Jie Zhang, Yang Xiang, Liya Ding, Kristin Keen-Circle, Tara Borlawsky, Hatice Gulcin Ozer, Ruoming Jin, Philip R. O. Payne, Kun Huang
2009	—	`conf`	A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments. BICoB Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Hui-Ming Huang, Ümit V. Çatalyürek, Kun Huang
2009	—	`conf`	Clinical Attribute Network for Chronic Lymphocytic Leukemia. BIBM Abhisek Kundu, Hatice Gulcin Ozer, Tara Borlawsky, Kristin C. Circle, Kun Huang, Philip R. O. Payne
2009	J	`jnl`	Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinform. Cenny Taslim, Jiejun Wu, Pearlly Yan, Greg Singer, Jeffrey D. Parvin, Tim Hui-Ming Huang, Shili Lin, Kun Huang
2009	—	`conf`	Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. BIBM Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç
2009	J	`jnl`	Feature-based registration of histopathology images with different stains: An application for computerized follicular lymphoma prognosis. Comput. Methods Programs Biomed. Lee Cooper, Olcay Sertel, Jun Kong, Gerard Lozanski, Kun Huang, Metin N. Gurcan
2009	J	`jnl`	Non-rigid Registration for Large Sets of Microscopic Images on Graphics Processors. J. Signal Process. Syst. Antonio Ruiz, Manuel Ujaldon, Lee Cooper, Kun Huang
2009	J	`jnl`	Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging. Medical Image Anal. Firdaus Janoos, Kishore Mosaliganti, Xiaoyin Xu, Raghu Machiraju, Kun Huang, Stephen T. C. Wong
2009	J	`jnl`	Tensor classification of N-point correlation function features for histology tissue segmentation. Medical Image Anal. Kishore Mosaliganti, Firdaus Janoos, M. Okan Irfanoglu, Randall Ridgway, Raghu Machiraju, Kun Huang, Joel H. Saltz, Gustavo Leone, Michael C. Ostrowski
2009	—	`conf`	Using Frequent Co-expression Network to Identify Gene Clusters for Breast Cancer Prognosis. IJCBS Jie Zhang, Kun Huang, Yang Xiang, Ruoming Jin
2008	J	`jnl`	An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. J. Biomed. Informatics Kishore Mosaliganti, Tony Pan, Randall Ridgway, Richard Sharp, Lee Cooper, Alex Gulacy, Ashish Sharma, M. Okan Irfanoglu, Raghu Machiraju, Tahsin M. Kurç, Alain de Bruin, Pamela Wenzel, Gustavo Leone, Joel H. Saltz, Kun Huang
2008	J	`jnl`	Geometry-driven Visualization of Microscopic Structures in Biology. Comput. Graph. Forum Kishore Mosaliganti, Raghu Machiraju, Kun Huang, Gustavo Leone
2008	—	`conf`	Geometry-driven visualization of microscopic structures in biology. ISBI Kishore Mosaliganti, Raghu Machiraju, Kun Huang
2008	J	`jnl`	Reconstruction of Cellular Biological Structures from Optical Microscopy Data. IEEE Trans. Vis. Comput. Graph. Kishore Mosaliganti, Lee Cooper, Richard Sharp, Raghu Machiraju, Gustavo Leone, Kun Huang, Joel H. Saltz
2007	J	`jnl`	Detection and Visualization of Surface-Pockets to Enable Phenotyping Studies. IEEE Trans. Medical Imaging Kishore Mosaliganti, Firdaus Janoos, Richard Sharp, Randall Ridgway, Raghu Machiraju, Kun Huang, Pamela Wenzel, Alain de Bruin, Gustavo Leone, Joel H. Saltz
2007	—	`conf`	Multi-Resolution Image Segmentation Using the 2-Point Correlation Functions. ISBI Firdaus Janoos, M. Okan Irfanoglu, Kishore Mosaliganti, Raghu Machiraju, Kun Huang, Pamela Wenzel, Alain de Bruin, Gustavo Leone
2007	C	`conf`	The GPU on biomedical image processing for color and phenotype analysis. BIBE Antonio Ruiz, Manuel Ujaldon, Jose Antonio Andrades, Jose Becerra, Kun Huang, Tony Pan, Joel H. Saltz
2007	J	`jnl`	Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data. Comput. Sci. Eng. Richard Sharp, Randall Ridgway, Kishore Mosaliganti, Pamela Wenzel, Tony Pan, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz
2006	—	`conf`	Automatic registration of large set of microscopic images using high-level features. ISBI Jeff Prescott, Matthew Clary, Gregory J. Wiet, Tony Pan, Kun Huang
2006	J	`jnl`	Multiscale Hybrid Linear Models for Lossy Image Representation. IEEE Trans. Image Process. Wei Hong, John Wright, Kun Huang, Yi Ma
2006	B	`conf`	Registration and 3D visualization of large microscopy images. Image Processing Kishore Mosaliganti, Tony Pan, Richard Sharp, Randall Ridgway, Srivathsan Iyengar, Alexandra Gulacy, Pamela Wenzel, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz
2006	—	`conf`	Spatial Segmentation of Temporal Texture Using Mixture Linear Models. WDV Lee Cooper, Jun Liu, Kun Huang
2005	A*	`conf`	A Multi-Scale Hybrid Linear Model for Lossy Image Representation. ICCV Wei Hong, John Wright, Kun Huang, Yi Ma
2005	—	`conf`	Supporting Large Scale Medical and Scientific Datasets. PARCO Ümit V. Çatalyürek, Shannon Hastings, Kun Huang, Vijay S. Kumar, Tahsin M. Kurç, Stephen Langella, Sivaramakrishnan Narayanan, Scott Oster, Tony Pan, Benjamin Rutt, Xi Zhang, Joel H. Saltz
2005	J	`jnl`	Symmetry-based 3-D reconstruction from perspective images. Comput. Vis. Image Underst. Allen Y. Yang, Kun Huang, Shankar R. Rao, Wei Hong, Yi Ma
2005	J	`jnl`	Symmetry-based photo-editing. Pattern Recognit. Kun Huang, Wei Hong, Yi Ma
2005	J	`jnl`	XML database support for distributed execution of data-intensive scientific workflows. SIGMOD Rec. Shannon Hastings, Matheus Ribeiro, Stephen Langella, Scott Oster, Ümit V. Çatalyürek, Tony Pan, Kun Huang, Renato Ferreira, Joel H. Saltz, Tahsin M. Kurç
2004	—	`conf`	Identification of hybrid linear time-invariant systems via subspace embedding and segmentation (SES). CDC Kun Huang, Andrew Wagner, Yi Ma
2004	A*	`conf`	Large-baseline Matching and Reconstruction from Symmetry Cells. ICRA Kun Huang, Allen Y. Yang, Wei Hong, Yi Ma
2004	—	`conf`	Minimum Effective Dimension for Mixtures of Subspaces: A Robust GPCA Algorithm and Its Applications. CVPR (2) Kun Huang, Yi Ma, René Vidal
2004	J	`jnl`	On Symmetry and Multiple-View Geometry: Structure, Pose, and Calibration from a Single Image. Int. J. Comput. Vis. Wei Hong, Allen Y. Yang, Kun Huang, Yi Ma
2004	J	`jnl`	Rank Conditions on the Multiple-View Matrix. Int. J. Comput. Vis. Yi Ma, Kun Huang, René Vidal, Jana Kosecka, Shankar Sastry
2004	B	`conf`	Sparse representation of images with hybrid linear models. ICIP Kun Huang, Allen Y. Yang, Yi Ma
2004	Misc	`conf`	Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data. High Performance Computing Workshop Matheus Ribeiro, Tahsin M. Kurç, Tony Pan, Kun Huang, Ümit V. Çatalyürek, Xi Zhang, Stephen Langella, Shannon Hastings, Scott Oster, Renato Ferreira, Joel H. Saltz
2003	A*	`conf`	Geometric Segmentation of Perspective Images Based on Symmetry Groups. ICCV Allen Y. Yang, Shankar R. Rao, Kun Huang, Wei Hong, Yi Ma
2003	—	`conf`	Symmetry-Based Photo Editing. HLK Kun Huang, Wei Hong, Yi Ma
2002	—	`conf`	Generalized Rank Conditions in Multiple View Geometry with Applications to Dynamical Scenes. ECCV (2) Kun Huang, Robert M. Fossum, Yi Ma