Kristoffer Sahlin

17 papers B 4Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
De novo clustering of large long-read transcriptome datasets with isONclust3.
Bioinform.
Alexander J. Petri, Kristoffer Sahlin
2024 J jnl
Designing efficient randstrobes for sequence similarity analyses.
Bioinform.
Moein Karami, Aryan Soltani Mohammadi, Marcel Martin, Baris Ekim, Wei Shen, Lidong Guo, Mengyang Xu, Giulio Ermanno Pibiri, Rob Patro, Kristoffer Sahlin
2023 J jnl
isONform: reference-free transcriptome reconstruction from Oxford Nanopore data.
Bioinform.
Alexander J. Petri, Kristoffer Sahlin
2022 J jnl
Safety in Multi-Assembly via Paths Appearing in All Path Covers of a DAG.
IEEE ACM Trans. Comput. Biol. Bioinform.
Manuel Cáceres, Brendan Mumey, Edin Husic, Romeo Rizzi, Massimo Cairo, Kristoffer Sahlin, Alexandru I. Tomescu
2021 J jnl
Accurate spliced alignment of long RNA sequencing reads.
Bioinform.
Kristoffer Sahlin, Veli Mäkinen
2020 B conf
Chaining with Overlaps Revisited.
CPM
Veli Mäkinen, Kristoffer Sahlin
2020 J jnl
Chaining with overlaps revisited.
CoRR
Veli Mäkinen, Kristoffer Sahlin
2020 J jnl
De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality Value-Based Algorithm.
J. Comput. Biol.
Kristoffer Sahlin, Paul Medvedev
2019 B conf
De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality-Value Based Algorithm.
RECOMB
Kristoffer Sahlin, Paul Medvedev
2017 J jnl
Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias.
J. Comput. Biol.
Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad
2016 J jnl
Assembly scaffolding with PE-contaminated mate-pair libraries.
Bioinform.
Kristoffer Sahlin, Rayan Chikhi, Lars Arvestad
2016 J jnl
Gap Filling as Exact Path Length Problem.
J. Comput. Biol.
Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu
2016 B conf
Structural Variation Detection with Read Pair Information - An Improved Null-Hypothesis Reduces Bias.
RECOMB
Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad
2015 — —
Algorithms and statistical models for scaffolding contig assemblies and detecting structural variants using read pair data.
Kristoffer Sahlin
2015 B conf
Gap Filling as Exact Path Length Problem.
RECOMB
Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu
2014 J jnl
BESST - Efficient scaffolding of large fragmented assemblies.
BMC Bioinform.
Kristoffer Sahlin, Francesco Vezzi, Björn Nystedt, Joakim Lundeberg, Lars Arvestad
2012 J jnl
Improved gap size estimation for scaffolding algorithms.
Bioinform.
Kristoffer Sahlin, Nathaniel Street, Joakim Lundeberg, Lars Arvestad