Kristoffer Forslund

21 papers C 1Journal 20
YearRankTypeTitle / Venue / Authors
2018 J jnl
Gearing up to handle the mosaic nature of life in the quest for orthologs.
Bioinform.
Kristoffer Forslund, Cécile Pereira, Salvador Capella-Gutiérrez, Alan W. Sousa da Silva, Adrian M. Altenhoff, Jaime Huerta-Cepas, Matthieu Muffato, Mateus Patricio, Klaas Vandepoele, Ingo Ebersberger, Judith A. Blake, Jesualdo Tomás Fernández-Breis, Quest for Orthologs Consortium, Brigitte Boeckmann, Toni Gabaldón, Erik L. L. Sonnhammer, Christophe Dessimoz, Suzanna Lewis
2017 J jnl
RTK: efficient rarefaction analysis of large datasets.
Bioinform.
Paul Saary, Kristoffer Forslund, Peer Bork, Falk Hildebrand
2017 J jnl
proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes.
Nucleic Acids Res.
Daniel R. Mende, Ivica Letunic, Jaime Huerta-Cepas, Simone S. Li, Kristoffer Forslund, Shinichi Sunagawa, Peer Bork
2016 J jnl
Benchmarking the next generation of homology inference tools.
Bioinform.
Ganapathi Varma Saripella, Erik L. L. Sonnhammer, Kristoffer Forslund
2016 J jnl
MOCAT2: a metagenomic assembly, annotation and profiling framework.
Bioinform.
Jens Roat Kultima, Luís Pedro Coelho, Kristoffer Forslund, Jaime Huerta-Cepas, Simone S. Li, Marja Driessen, Anita Yvonne Voigt, Georg Zeller, Shinichi Sunagawa, Peer Bork
2016 J jnl
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.
Nucleic Acids Res.
Jaime Huerta-Cepas, Damian Szklarczyk, Kristoffer Forslund, Helen Cook, Davide Heller, Mathias C. Walter, Thomas Rattei, Daniel R. Mende, Shinichi Sunagawa, Michael Kuhn, Lars Juhl Jensen, Christian von Mering, Peer Bork
2015 J jnl
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.
Nat.
Kristoffer Forslund, Falk Hildebrand, Trine Nielsen, Gwen Falony, Emmanuelle Le Chatelier, Shinichi Sunagawa, Edi Prifti, Sara Vieira-Silva, Valborg Gudmundsdottir, Helle Krogh Pedersen, Manimozhiyan Arumugam, Karsten Kristiansen, Anita Yvonne Voigt, Henrik Vestergaard, Rajna Hercog, Paul I. Costea, Jens Roat Kultima, Junhua Li, Torben Jørgensen, Florence Levenez, Joël Dore, Henrik Bjørn Nielsen, Søren Brunak, Jeroen Raes, Torben Hansen, Jun Wang, S. Dusko Ehrlich, Peer Bork, Oluf Pedersen
2015 J jnl
STRING v10: protein-protein interaction networks, integrated over the tree of life.
Nucleic Acids Res.
Damian Szklarczyk, Andrea Franceschini, Stefan Wyder, Kristoffer Forslund, Davide Heller, Jaime Huerta-Cepas, Milan Simonovic, Alexander Roth, Alberto Santos, Kalliopi Tsafou, Michael Kuhn, Peer Bork, Lars Juhl Jensen, Christian von Mering
2014 J jnl
eggNOG v4.0: nested orthology inference across 3686 organisms.
Nucleic Acids Res.
Sean Powell, Kristoffer Forslund, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Jaime Huerta-Cepas, Toni Gabaldón, Thomas Rattei, Christopher J. Creevey, Michael Kuhn, Lars Juhl Jensen, Christian von Mering, Peer Bork
2012 J jnl
The Pfam protein families database.
Nucleic Acids Res.
Marco Punta, Penny C. Coggill, Ruth Y. Eberhardt, Jaina Mistry, John G. Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, Robert D. Finn
2011 J jnl
Domain architecture conservation in orthologs.
BMC Bioinform.
Kristoffer Forslund, Isabella Pekkari, Erik L. L. Sonnhammer
2011 J jnl
OrthoDisease: tracking disease gene orthologs across 100 species.
Briefings Bioinform.
Kristoffer Forslund, Fabian Schreiber, Nattaphon Thanintorn, Erik L. L. Sonnhammer
2010 J jnl
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis.
Nucleic Acids Res.
Gabriel Östlund, Thomas Schmitt, Kristoffer Forslund, Tina Köstler, David N. Messina, Sanjit Roopra, Oliver Frings, Erik L. L. Sonnhammer
2010 J jnl
The Pfam protein families database.
Nucleic Acids Res.
Robert D. Finn, Jaina Mistry, John G. Tate, Penny C. Coggill, Andreas Heger, Joanne E. Pollington, O. Luke Gavin, Prasad Gunasekaran, Goran Ceric, Kristoffer Forslund, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman
2009 J jnl
Benchmarking homology detection procedures with low complexity filters.
Bioinform.
Kristoffer Forslund, Erik L. L. Sonnhammer
2009 J jnl
Predicting protein function from domain content.
Bioinform.
Kristoffer Forslund, Erik L. L. Sonnhammer
2008 C conf
Constructing Phylogenetic Supernetworks from Quartets.
WABI
Stefan Grünewald, Andreas Spillner, Kristoffer Forslund, Vincent Moulton
2008 J jnl
Predicting protein function from domain content.
Bioinform.
Kristoffer Forslund, Erik L. L. Sonnhammer
2008 J jnl
Predicting protein function from domain content.
Bioinform.
Kristoffer Forslund, Erik L. L. Sonnhammer
2008 J jnl
The Pfam protein families database.
Nucleic Acids Res.
Robert D. Finn, John G. Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman
2004 J jnl
VisRD--visual recombination detection.
Bioinform.
Kristoffer Forslund, Daniel H. Huson, Vincent Moulton