Krister Wennerberg

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2023 J jnl
Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data.
Nucleic Acids Res.
Potdar Swapnil, Filipp Ianevski, Aleksandr Ianevski, ZiaurRehman Tanoli, Krister Wennerberg, Brinton Seashore-Ludlow, Olli-P. Kallioniemi, Päivi Östling, Tero Aittokallio, Saarela Jani
2022 J jnl
Minimal information for chemosensitivity assays (MICHA): a next-generation pipeline to enable the FAIRification of drug screening experiments.
Briefings Bioinform.
ZiaurRehman Tanoli, Jehad Aldahdooh, Farhan Alam, Yinyin Wang, Umair Seemab, Maddalena Fratelli, Petr Pavlis, Marián Hajdúch, Florence Bietrix, Philip Gribbon, Andrea Zaliani, Matthew D. Hall, Min Shen, Kyle R. Brimacombe, Evgeny Kulesskiy, Saarela Jani, Krister Wennerberg, Markus Vähä-Koskela, Jing Tang
2021 J jnl
Exploration of databases and methods supporting drug repurposing: a comprehensive survey.
Briefings Bioinform.
ZiaurRehman Tanoli, Umair Seemab, Andreas Scherer, Krister Wennerberg, Jing Tang, Markus Vähä-Koskela
2021 J jnl
Network-guided identification of cancer-selective combinatorial therapies in ovarian cancer.
Briefings Bioinform.
Liye He, Daria Bulanova, Jaana Oikkonen, Antti Häkkinen, Kaiyang Zhang, Shuyu Zheng, Wenyu Wang, Erdogan Pekcan Erkan, Olli Carpén, Titta Joutsiniemi, Sakari Hietanen, Johanna Hynninen, Kaisa Huhtinen, Sampsa Hautaniemi, Anna Vähärautio, Jing Tang, Krister Wennerberg, Tero Aittokallio
2020 J jnl
Breeze: an integrated quality control and data analysis application for high-throughput drug screening.
Bioinform.
Potdar Swapnil, Aleksandr Ianevski, John-Patrick Mpindi, Dmitrii Bychkov, Clément Fiere, Philipp Ianevski, Bhagwan Yadav, Krister Wennerberg, Tero Aittokallio, Olli-P. Kallioniemi, Saarela Jani, Päivi Östling
2020 J jnl
Interactive visual analysis of drug-target interaction networks using Drug Target Profiler, with applications to precision medicine and drug repurposing.
Briefings Bioinform.
ZiaurRehman Tanoli, Zaid Alam, Aleksandr Ianevski, Krister Wennerberg, Markus Vähä-Koskela, Tero Aittokallio
2019 J jnl
Prediction of drug combination effects with a minimal set of experiments.
Nat. Mach. Intell.
Aleksandr Ianevski, Anil K. Giri, Prson Gautam, Alexander Kononov, Potdar Swapnil, Saarela Jani, Krister Wennerberg, Tero Aittokallio
2018 J jnl
Drug Target Commons 2.0: a community platform for systematic analysis of drug-target interaction profiles.
Database J. Biol. Databases Curation
ZiaurRehman Tanoli, Zaid Alam, Markus Vähä-Koskela, Balaguru Ravikumar, Alina Malyutina, Alok Jaiswal, Jing Tang, Krister Wennerberg, Tero Aittokallio
2018 J jnl
Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach.
Bioinform.
Mehreen Ali, Suleiman A. Khan, Krister Wennerberg, Tero Aittokallio
2017 J jnl
Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors.
PLoS Comput. Biol.
Anna Cichonska, Balaguru Ravikumar, Elina Parri, Sanna Timonen, Tapio Pahikkala, Antti Airola, Krister Wennerberg, Juho Rousu, Tero Aittokallio
2017 J jnl
Systematic identification of feature combinations for predicting drug response with Bayesian multi-view multi-task linear regression.
Bioinform.
Muhammad Ammad-ud-din, Suleiman A. Khan, Krister Wennerberg, Tero Aittokallio
2015 J jnl
Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose-response data.
Bioinform.
John-Patrick Mpindi, Potdar Swapnil, Dmitrii Bychkov, Saarela Jani, Khalid Saeed, Krister Wennerberg, Tero Aittokallio, Päivi Östling, Olli-P. Kallioniemi
2015 J jnl
TIMMA-R: an R package for predicting synergistic multi-targeted drug combinations in cancer cell lines or patient-derived samples.
Bioinform.
Liye He, Krister Wennerberg, Tero Aittokallio, Jing Tang
2014 J jnl
Identification of structural features in chemicals associated with cancer drug response: a systematic data-driven analysis.
Bioinform.
Suleiman A. Khan, Seppo Virtanen, Olli-P. Kallioniemi, Krister Wennerberg, Antti Poso, Samuel Kaski
2014 J jnl
Integrative and Personalized QSAR Analysis in Cancer by Kernelized Bayesian Matrix Factorization.
J. Chem. Inf. Model.
Muhammad Ammad-ud-din, Elisabeth Georgii, Mehmet Gönen, Tuomo Laitinen, Olli-P. Kallioniemi, Krister Wennerberg, Antti Poso, Samuel Kaski
2014 J jnl
Making Sense of Large-Scale Kinase Inhibitor Bioactivity Data Sets: A Comparative and Integrative Analysis.
J. Chem. Inf. Model.
Jing Tang, Agnieszka Szwajda, Sushil Kumar Shakyawar, Tao Xu, Petteri Hintsanen, Krister Wennerberg, Tero Aittokallio
2013 J jnl
Target Inhibition Networks: Predicting Selective Combinations of Druggable Targets to Block Cancer Survival Pathways.
PLoS Comput. Biol.
Jing Tang, Leena Karhinen, Tao Xu, Agnieszka Szwajda, Bhagwan Yadav, Krister Wennerberg, Tero Aittokallio
2012 J jnl
Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs.
BMC Bioinform.
Suleiman A. Khan, Ali Faisal, John Mpindi, Juuso A. Parkkinen, Tuomo Kalliokoski, Antti Poso, Olli-P. Kallioniemi, Krister Wennerberg, Samuel Kaski