Krishna R. Kalari

12 papers Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
A Short Survey on Set-Based Aggregation Techniques for Single-Vector WSI Representation in Digital Pathology.
CoRR
Sobhan Hemati, Krishna R. Kalari, Hamid R. Tizhoosh
2020 J jnl
Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data.
Bioinform.
Wenjiang Deng, Tian Mou, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Trung-Nghia Vu
2019 J jnl
Cell-level somatic mutation detection from single-cell RNA sequencing.
Bioinform.
Trung-Nghia Vu, Ha-Nam Nguyen, Stefano Calza, Krishna R. Kalari, Liewei Wang, Yudi Pawitan
2018 J jnl
HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.
BMC Bioinform.
Saurabh Baheti, Xiaojia Tang, Daniel R. O'Brien, Nicholas Chia, Lewis R. Roberts, Heidi Nelson, Judy C. Boughey, Liewei Wang, Matthew P. Goetz, Jean-Pierre A. Kocher, Krishna R. Kalari
2018 J jnl
Isoform-level gene expression patterns in single-cell RNA-sequencing data.
Bioinform.
Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Mattias Rantalainen
2016 J jnl
Beta-Poisson model for single-cell RNA-seq data analyses.
Bioinform.
Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Mattias Rantalainen, Yudi Pawitan
2016 J jnl
Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.
Briefings Bioinform.
Khader Shameer, Lokesh P. Tripathi, Krishna R. Kalari, Joel T. Dudley, Ramanathan Sowdhamini
2016 — conf
Unsupervised single-cell analysis in triple-negative breast cancer: A case study.
BIBM
Arjun P. Athreya, Alan J. Gaglio, Zbigniew T. Kalbarczyk, Ravishankar K. Iyer, Junmei Cairns, Krishna R. Kalari, Richard M. Weinshilboum, Liewei Wang
2014 J jnl
MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing.
BMC Bioinform.
Krishna R. Kalari, Asha A. Nair, Jaysheel D. Bhavsar, Daniel R. O'Brien, Jaime I. Dávila, Matthew A. Bockol, Jinfu J. Nie, Xiaojia Tang, Saurabh Baheti, Jay B. Doughty, Sumit Middha, Hugues Sicotte, E. Aubrey Thompson, Yan W. Asmann, Jean-Pierre A. Kocher
2012 J jnl
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.
Bioinform.
Yan W. Asmann, Sumit Middha, Asif Hossain, Saurabh Baheti, Ying Li, High-Seng Chai, Zhifu Sun, Patrick H. Duffy, Ahmed A. Hadad, Asha A. Nair, Xiaoyu Liu, Yuji Zhang, Eric W. Klee, Krishna R. Kalari, Jean-Pierre A. Kocher
2008 J jnl
A knowledge-based approach to predict intragenic deletions or duplications.
Bioinform.
Krishna R. Kalari, Thomas L. Casavant, Todd E. Scheetz
2006 J jnl
First Exons and Introns - A Survey of GC Content and Gene Structure in the Human Genome.
Silico Biol.
Krishna R. Kalari, Melanie Casavant, Thomas B. Bair, Henry L. Keen, Josep M. Comeron, Thomas L. Casavant, Todd E. Scheetz