Kris Laukens

33 papers Journal 30Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
tcrBLOSUM: an amino acid substitution matrix for sensitive alignment of distant epitope-specific TCRs.
Briefings Bioinform.
Anna Postovskaya, Koen Vercauteren, Pieter Meysman, Kris Laukens
2024 J jnl
Benchmarking of Small Molecule Feature Representations for hERG, Nav1.5, and Cav1.2 Cardiotoxicity Prediction.
J. Chem. Inf. Model.
Issar Arab, Kristof Egghe, Kris Laukens, Ke Chen, Khaled H. Barakat, Wout Bittremieux
2024 J jnl
Correction to "Semisupervised Learning to Boost hERG, Nav1.5, and Cav1.2 Cardiac Ion Channel Toxicity Prediction by Mining a Large Unlabeled Small Molecule Data Set".
J. Chem. Inf. Model.
Issar Arab, Kris Laukens, Wout Bittremieux
2024 J jnl
Semisupervised Learning to Boost hERG, Nav1.5, and Cav1.2 Cardiac Ion Channel Toxicity Prediction by Mining a Large Unlabeled Small Molecule Data Set.
J. Chem. Inf. Model.
Issar Arab, Kris Laukens, Wout Bittremieux
2024 J jnl
TransExION: a transformer based explainable similarity metric for comparing IONS in tandem mass spectrometry.
J. Cheminformatics
Danh Bui Thi, Youzhong Liu, Jennifer L. Lippens, Kris Laukens, Thomas De Vijlder
2023 J jnl
The pitfalls of negative data bias for the T-cell epitope specificity challenge.
Nat. Mac. Intell.
Ceder Dens, Kris Laukens, Wout Bittremieux, Pieter Meysman
2022 J jnl
A treatment recommender clinical decision support system for personalized medicine: method development and proof-of-concept for drug resistant tuberculosis.
BMC Medical Informatics Decis. Mak.
Lennert Verboven, Toon Calders, Steven Callens, John Black, Gary Maartens, Kelly E. Dooley, Samantha Potgieter, Robin M. Warren, Kris Laukens, Annelies Van Rie
2022 J jnl
MoMAC: Multi-objective optimization to combine multiple association rules into an interpretable classification.
Appl. Intell.
Danh Bui Thi, Pieter Meysman, Kris Laukens
2021 J jnl
ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity.
Bioinform.
Sebastiaan Valkiers, Marc van Houcke, Kris Laukens, Pieter Meysman
2021 J jnl
Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification.
Briefings Bioinform.
Pieter Moris, Joey De Pauw, Anna Postovskaya, Sofie Gielis, Nicolas De Neuter, Wout Bittremieux, Benson Ogunjimi, Kris Laukens, Pieter Meysman
2020 J jnl
Clustering association rules to build beliefs and discover unexpected patterns.
Appl. Intell.
Danh Bui Thi, Pieter Meysman, Kris Laukens
2020 J jnl
MILES: a Java tool to extract node-specific enriched subgraphs in biomolecular networks.
Bioinform.
Pieter Moris, Danh Bui Thi, Kris Laukens, Pieter Meysman
2019 J jnl
Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pieter Meysman, Yvan Saeys, Ehsan Sabaghian, Wout Bittremieux, Yves Van de Peer, Bart Goethals, Kris Laukens
2019 J jnl
On the viability of unsupervised T-cell receptor sequence clustering for epitope preference.
Bioinform.
Pieter Meysman, Nicolas De Neuter, Sofie Gielis, Danh Bui Thi, Benson Ogunjimi, Kris Laukens
2018 J jnl
Grasping frequent subgraph mining for bioinformatics applications.
BioData Min.
Aida Mrzic, Pieter Meysman, Wout Bittremieux, Pieter Moris, Boris Cule, Bart Goethals, Kris Laukens
2018 J jnl
pBRIT: gene prioritization by correlating functional and phenotypic annotations through integrative data fusion.
Bioinform.
Ajay Anand Kumar, Lut Van Laer, Maaike Alaerts, Amin Ardeshirdavani, Yves Moreau, Kris Laukens, Bart Loeys, Geert Vandeweyer
2018 J jnl
speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification.
PLoS Comput. Biol.
Charlie Beirnaert, Pieter Meysman, Trung-Nghia Vu, Nina Hermans, Sandra Apers, Luc Pieters, Adrian Covaci, Kris Laukens
2017 J jnl
sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets.
Bioinform.
Kevin Titeca, Pieter Meysman, Kris Laukens, Lennart Martens, Jan Tavernier, Sven Eyckerman
2016 J jnl
COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.
Nucleic Acids Res.
Marco Moretto, Paolo Sonego, Nicolas Dierckxsens, Matteo Brilli, Luca Bianco, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Marco Galardini, Chiara Romualdi, Kris Laukens, Julio Collado-Vides, Pieter Meysman, Kristof Engelen
2016 J jnl
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.
BMC Bioinform.
Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Raju Nagarajan, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic
2015 J jnl
A primer to frequent itemset mining for bioinformatics.
Briefings Bioinform.
Stefan Naulaerts, Pieter Meysman, Wout Bittremieux, Trung-Nghia Vu, Wim Vanden Berghe, Bart Goethals, Kris Laukens
2015 — conf
Mining Association Rules in Graphs Based on Frequent Cohesive Itemsets.
PAKDD (2)
Tayena Hendrickx, Boris Cule, Pieter Meysman, Stefan Naulaerts, Kris Laukens, Bart Goethals
2015 J jnl
Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns.
BioData Min.
Pieter Meysman, Cheng Zhou, Boris Cule, Bart Goethals, Kris Laukens
2015 J jnl
Mining the human proteome for conserved mechanisms.
BMC Bioinform.
Stefan Naulaerts, Pieter Meysman, Wim Vanden Berghe, Kris Laukens
2014 J jnl
COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia.
Nucleic Acids Res.
Pieter Meysman, Paolo Sonego, Luca Bianco, Qiang Fu, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Veerle Liebens, Jan Michiels, Kris Laukens, Kathleen Marchal, Julio Collado-Vides, Kristof Engelen
2014 J jnl
Discovery of Spatially Cohesive Itemsets in Three-Dimensional Protein Structures.
IEEE ACM Trans. Comput. Biol. Bioinform.
Cheng Zhou, Pieter Meysman, Boris Cule, Kris Laukens, Bart Goethals
2013 — conf
Mining spatially cohesive itemsets in protein molecular structures.
BIOKDD
Cheng Zhou, Pieter Meysman, Boris Cule, Kris Laukens, Bart Goethals
2012 — conf
AcoSeeD: An Ant Colony Optimization for Finding Optimal Spaced Seeds in Biological Sequence Search.
ANTS
Dong Do Duc, Huy Q. Dinh, Thanh Hai Dang, Kris Laukens, Huan Hoang Xuan
2011 J jnl
An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data.
BMC Bioinform.
Trung-Nghia Vu, Dirk Valkenborg, Koen Smets, Kim A. Verwaest, Roger Dommisse, Filip Lemière, Alain Verschoren, Bart Goethals, Kris Laukens
2011 J jnl
Use of structural DNA properties for the prediction of transcription-factor binding sites in
Nucleic Acids Res.
Pieter Meysman, Thanh Hai Dang, Kris Laukens, Riet De Smet, Yan Wu, Kathleen Marchal, Kristof Engelen
2010 J jnl
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL.
BMC Bioinform.
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geert De Jaeger, Martin Kuiper, Erwin Witters, Alain Verschoren, Koenraad Van Leemput
2008 J jnl
Prediction of kinase-specific phosphorylation sites using conditional random fields.
Bioinform.
Thanh Hai Dang, Koenraad Van Leemput, Alain Verschoren, Kris Laukens
2006 J jnl
Integration of gel-based proteome data with pProRep.
Bioinform.
Kris Laukens, Rune Matthiesen, Filip Lemière, Eddy Esmans, Harry Van Onckelen, Ole Nørregaard Jensen, Erwin Witters