Kresten Lindorff-Larsen

17 papers A 2Journal 15
YearRankTypeTitle / Venue / Authors
2025 J jnl
Accessible, uniform protein property prediction with a scikit-learn based toolset AIDE.
Bioinform.
Evan Komp, Kristoffer E. Johansson, Nicholas Paul Gauthier, Japheth E. Gado, Kresten Lindorff-Larsen, Gregg T. Beckham
2025 J jnl
Computational characterization of the xanthan gum glycosyltransferase GumK.
PLoS Comput. Biol.
Davide Luciano, F. Emil Thomasen, Kresten Lindorff-Larsen, Gaston Courtade
2025 J jnl
MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.
Bioinform.
Mahta Mehdiabadi, Matthias Blum, Giulio Tesei, Sören von Bülow, Kresten Lindorff-Larsen, Silvio C. E. Tosatto, Damiano Piovesan
2025 J jnl
Optimized Protein-Excipient Interactions in the Martini 3 Force Field.
J. Chem. Inf. Model.
Tobias M. Prass, Kresten Lindorff-Larsen, Patrick Garidel, Michaela Blech, Lars V. Schäfer
2025 J jnl
Zero-shot protein stability prediction by inverse folding models: a free energy interpretation.
CoRR
Jes Frellsen, Maher M. Kassem, Tone Bengtsen, Lars Olsen, Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg, Wouter Boomsma
2024 J jnl
Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference.
PLoS Comput. Biol.
Samuel E. Hoff, F. Emil Thomasen, Kresten Lindorff-Larsen, Massimiliano Bonomi
2021 J jnl
DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles.
PLoS Comput. Biol.
Giulio Tesei, João M. Martins, Micha B. A. Kunze, Yong Wang, Ramon Crehuet, Kresten Lindorff-Larsen
2020 J jnl
Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution.
PLoS Comput. Biol.
Andreas Haahr Larsen, Yong Wang, Sandro Bottaro, Sergei Grudinin, Lise Arleth, Kresten Lindorff-Larsen
2020 J jnl
What Will Computational Modeling Approaches Have to Say in the Era of Atomistic Cryo-EM Data?
J. Chem. Inf. Model.
James S. Fraser, Kresten Lindorff-Larsen, Massimiliano Bonomi
2019 J jnl
Bayesian-Maximum-Entropy Reweighting of IDP Ensembles Based on NMR Chemical Shifts.
Entropy
Ramon Crehuet, Pedro J. Buigues, Xavier Salvatella, Kresten Lindorff-Larsen
2018 J jnl
An automatic seating plan algorithm.
PeerJ Prepr.
Kresten Lindorff-Larsen
2015 J jnl
ENCORE: Software for Quantitative Ensemble Comparison.
PLoS Comput. Biol.
Matteo Tiberti, Elena Papaleo, Tone Bengtsen, Wouter Boomsma, Kresten Lindorff-Larsen
2014 J jnl
Combining Experiments and Simulations Using the Maximum Entropy Principle.
PLoS Comput. Biol.
Wouter Boomsma, Jesper Ferkinghoff-Borg, Kresten Lindorff-Larsen
2014 J jnl
Communication Routes in ARID Domains between Distal Residues in Helix 5 and the DNA-Binding Loops.
PLoS Comput. Biol.
Gaetano Invernizzi, Matteo Tiberti, Matteo Lambrughi, Kresten Lindorff-Larsen, Elena Papaleo
2013 J jnl
PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure.
J. Comput. Chem.
Wouter Boomsma, Jes Frellsen, Tim Harder, Sandro Bottaro, Kristoffer E. Johansson, Pengfei Tian, Kasper Stovgaard, Christian Andreetta, Simon Olsson, Jan B. Valentin, Lubomir D. Antonov, Anders S. Christensen, Mikael Borg, Jan H. Jensen, Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg, Thomas Hamelryck
2009 A conf
Millisecond-scale molecular dynamics simulations on Anton.
SC
David E. Shaw, Ron O. Dror, John K. Salmon, J. P. Grossman, Kenneth M. Mackenzie, Joseph A. Bank, Cliff Young, Martin M. Deneroff, Brannon Batson, Kevin J. Bowers, Edmond Chow, Michael P. Eastwood, Doug Ierardi, John L. Klepeis, Jeffrey Kuskin, Richard H. Larson, Kresten Lindorff-Larsen, Paul Maragakis, Mark A. Moraes, Stefano Piana, Yibing Shan, Brian Towles
2009 A conf
Millisecond-scale molecular dynamics simulations on Anton.
SC
David E. Shaw, Ron O. Dror, John K. Salmon, J. P. Grossman, Kenneth M. Mackenzie, Joseph A. Bank, Cliff Young, Martin M. Deneroff, Brannon Batson, Kevin J. Bowers, Edmond Chow, Michael P. Eastwood, Doug Ierardi, John L. Klepeis, Jeffrey Kuskin, Richard H. Larson, Kresten Lindorff-Larsen, Paul Maragakis, Mark A. Moraes, Stefano Piana, Yibing Shan, Brian Towles