Kota Kasahara

12 papers C 1Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2022 J jnl
Extended ensemble simulations of a SARS-CoV-2 nsp1-5'-UTR complex.
PLoS Comput. Biol.
Shun Sakuraba, Qilin Xie, Kota Kasahara, Junichi Iwakiri, Hidetoshi Kono
2020 J jnl
Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling.
J. Chem. Inf. Model.
Junichi Higo, Takeshi Kawabata, Ayumi Kusaka, Kota Kasahara, Narutoshi Kamiya, Ikuo Fukuda, Kentaro Mori, Yutaka Hata, Yoshifumi Fukunishi, Haruki Nakamura
2019 J jnl
Multidimensional virtual-system coupled canonical molecular dynamics to compute free-energy landscapes of peptide multimer assembly.
J. Comput. Chem.
Tomonori Hayami, Junichi Higo, Haruki Nakamura, Kota Kasahara
2018 J jnl
Molecular dynamics coupled with a virtual system for effective conformational sampling.
J. Comput. Chem.
Tomonori Hayami, Kota Kasahara, Haruki Nakamura, Junichi Higo
2017 J jnl
An FPGA Accelerator for Molecular Dynamics Simulation Using OpenCL.
Int. J. Networked Distributed Comput.
Hasitha Muthumala Waidyasooriya, Masanori Hariyama, Kota Kasahara
2016 C conf
Architecture of an FPGA accelerator for molecular dynamics simulation using OpenCL.
ICIS
Hasitha Muthumala Waidyasooriya, Masanori Hariyama, Kota Kasahara
2016 J jnl
mDCC_tools: characterizing multi-modal atomic motions in molecular dynamics trajectories.
Bioinform.
Kota Kasahara, Neetha Mohan, Ikuo Fukuda, Haruki Nakamura
2015 — conf
Development of Superconducting Tunnel Junction detectors as a far-infrared photon-by-photon spectrometer for neutrino decay search.
I2MTC
Yuji Takeuchi, Shin-Hong Kim, Kenichi Takemasa, Kenji Kiuchi, Kazuki Nagata, Kota Kasahara, Takuya Okudaira, Tatsuya Ichimura, Masahiro Kanamaru, Kouya Moriuchi, Ren Senzaki, Shunsuke Yagi, Hirokazu Ikeda, Shuji Matsuura, Takehiko Wada, Takuo Yoshida, Shota Komura, Keisuke Orikasa, Ryuta Hirose, Yukihiro Kato, Masashi Hazumi, Yasuo Arai, Shigetomo Shiki, Masahiro Ukibe, Go Fujii, Tetsuya Adachi, Masataka Ohkubo, Erik Ramberg, Jonghee Yoo, Mark Kozlovsky, Paul Rubinov, Dmitri Sergatskov, Hirokazu Ishino, Atsuko Kibayashi, Satoru Mima, Soo-Bong Kim
2015 J jnl
Virtual-system-coupled adaptive umbrella sampling to compute free-energy landscape for flexible molecular docking.
J. Comput. Chem.
Junichi Higo, Bhaskar DasGupta, Tadaaki Mashimo, Kota Kasahara, Yoshifumi Fukunishi, Haruki Nakamura
2014 J jnl
GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes.
BMC Bioinform.
Kota Kasahara, Kengo Kinoshita
2013 J jnl
Comprehensive Classification and Diversity Assessment of Atomic Contacts in Protein-Small Ligand Interactions.
J. Chem. Inf. Model.
Kota Kasahara, Matsuyuki Shirota, Kengo Kinoshita
2010 J jnl
Ligand-binding site prediction of proteins based on known fragment-fragment interactions.
Bioinform.
Kota Kasahara, Kengo Kinoshita, Toshihisa Takagi