Konrad Krawczyk

19 papers C 1Journal 15Unranked 3
YearRankTypeTitle / Venue / Authors
2025 — conf
From 'How Good?' to 'Is it Better?': Classification-Based Surrogate Models for JADE.
GECCO Companion
Konrad Krawczyk, Jaroslaw Arabas
2025 J jnl
RIOT - Rapid Immunoglobulin Overview Tool - annotation of nucleotide and amino acid immunoglobulin sequences using an open germline database.
Briefings Bioinform.
Pawel Dudzic, Bartosz Janusz, Tadeusz Satlawa, Dawid Chomicz, Tomasz Gawlowski, Rafal Grabowski, Przemek Józwiak, Mateusz Tarkowski, Maciej Mycielski, Sonia Wróbel, Konrad Krawczyk
2024 — conf
Empirical Study of Surrogate Model Assisting JADE: Relation Between the Model Accuracy and the Optimization Efficiency.
GECCO Companion
Konrad Krawczyk, Jaroslaw Arabas
2024 J jnl
LAP: Liability Antibody Profiler by sequence & structural mapping of natural and therapeutic antibodies.
PLoS Comput. Biol.
Tadeusz Satlawa, Mateusz Tarkowski, Sonia Wróbel, Pawel Dudzic, Tomasz Gawlowski, Tomasz Klaus, Marek Orlowski, Anna Kostyn, Sandeep Kumar, Andrew Buchanan, Konrad Krawczyk
2023 C conf
Comparison of Different Surrogate Models for the JADE Algorithm.
IJCCI
Konrad Krawczyk, Jaroslaw Arabas
2023 — conf
JADE with k Nearest Neighbors Surrogate Model.
GECCO Companion
Konrad Krawczyk, Jaroslaw Arabas
2022 J jnl
AbDiver: a tool to explore the natural antibody landscape to aid therapeutic design.
Bioinform.
Jakub Mlokosiewicz, Piotr Deszynski, Wiktoria Wilman, Igor Jaszczyszyn, Rajkumar Ganesan, Aleksandr Kovaltsuk, Jinwoo Leem, Jacob D. Galson, Konrad Krawczyk
2022 J jnl
INDI - integrated nanobody database for immunoinformatics.
Nucleic Acids Res.
Piotr Deszynski, Jakub Mlokosiewicz, Adam Volanakis, Igor Jaszczyszyn, Natalie Castellana, Stefano Bonissone, Rajkumar Ganesan, Konrad Krawczyk
2022 J jnl
MS2AI: automated repurposing of public peptide LC-MS data for machine learning applications.
Bioinform.
Tobias Greisager Rehfeldt, Konrad Krawczyk, Mathias Bøgebjerg, Veit Schwämmle, Richard Röttger
2022 J jnl
Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery.
Briefings Bioinform.
Wiktoria Wilman, Sonia Wróbel, Weronika Bielska, Piotr Deszynski, Pawel Dudzic, Igor Jaszczyszyn, Jedrzej Kaniewski, Jakub Mlokosiewicz, Anahita Rouyan, Tadeusz Satlawa, Sandeep Kumar, Victor Greiff, Konrad Krawczyk
2020 J jnl
Computational approaches to therapeutic antibody design: established methods and emerging trends.
Briefings Bioinform.
Richard A. Norman, Francesco Ambrosetti, Alexandre M. J. J. Bonvin, Lucy J. Colwell, Sebastian Kelm, Sandeep Kumar, Konrad Krawczyk
2020 J jnl
The evolution of contact prediction: evidence that contact selection in statistical contact prediction is changing.
Bioinform.
Mark Chonofsky, Saulo Henrique Pires de Oliveira, Konrad Krawczyk, Charlotte M. Deane
2018 J jnl
In silico structural modeling of multiple epigenetic marks on DNA.
Bioinform.
Konrad Krawczyk, Samuel Demharter, Bernhard Knapp, Charlotte M. Deane, Peter Minary
2018 J jnl
STCRDab: the structural T-cell receptor database.
Nucleic Acids Res.
Jinwoo Leem, Saulo Henrique Pires de Oliveira, Konrad Krawczyk, Charlotte M. Deane
2016 J jnl
Progress and challenges in predicting protein interfaces.
Briefings Bioinform.
Reyhaneh Esmaielbeiki, Konrad Krawczyk, Bernhard Knapp, Jean-Christophe Nebel, Charlotte M. Deane
2016 J jnl
SAbPred: a structure-based antibody prediction server.
Nucleic Acids Res.
James Dunbar, Konrad Krawczyk, Jinwoo Leem, Claire Marks, Jaroslaw Nowak, Cristian Regep, Guy Georges, Sebastian Kelm, Bojana Popovic, Charlotte M. Deane
2016 J jnl
Tertiary Element Interaction in HIV-1 TAR.
J. Chem. Inf. Model.
Konrad Krawczyk, Adelene Y. L. Sim, Bernhard Knapp, Charlotte M. Deane, Peter Minary
2014 J jnl
Improving B-cell epitope prediction and its application to global antibody-antigen docking.
Bioinform.
Konrad Krawczyk, Xiaofeng Liu, Terry Baker, Jiye Shi, Charlotte M. Deane
2014 J jnl
SAbDab: the structural antibody database.
Nucleic Acids Res.
James Dunbar, Konrad Krawczyk, Jinwoo Leem, Terry Baker, Angelika Fuchs, Guy Georges, Jiye Shi, Charlotte M. Deane