Koen Deforche

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2020 J jnl
Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes.
Bioinform.
Sara Cleemput, Wim Dumon, Vagner Fonseca, Wasim Abdool Karim, Marta Giovanetti, Luiz Carlos Alcantara, Koen Deforche, Tulio de Oliveira
2019 J jnl
Genome Detective: an automated system for virus identification from high-throughput sequencing data.
Bioinform.
Michael Vilsker, Yumna Moosa, Sam Nooij, Vagner Fonseca, Yoika Ghysens, Korneel Dumon, Raf Pauwels, Luiz Carlos Alcantara, Ewout Vanden Eynden, Anne-Mieke Vandamme, Koen Deforche, Tulio de Oliveira
2019 J jnl
VIRULIGN: fast codon-correct alignment and annotation of viral genomes.
Bioinform.
Pieter J. K. Libin, Koen Deforche, Ana B. Abecasis, Kristof Theys
2013 J jnl
RegaDB: community-driven data management and analysis for infectious diseases.
Bioinform.
Pieter Libin, Gertjan Beheydt, Koen Deforche, Stijn Imbrechts, Fossie Ferreira, Kristel Van Laethem, Kristof Theys, Ana Patricia Carvalho, Joana Cavaco-Silva, Giuseppe Lapadula, Carlo Torti, Matthias Assel, Stefan Wesner, Joke Snoeck, Jean Ruelle, Annelies De Bel, Patrick Lacor, Paul De Munter, Eric Van Wijngaerden, Maurizio Zazzi, Rolf Kaiser, Ahidjo Ayouba, Martine Peeters, Tulio de Oliveira, Luiz Carlos Júnior Alcântara, Zehava Grossman, Peter M. A. Sloot, Dan Otelea, Simona Paraschiv, Charles A. Boucher, Ricardo Camacho, Anne-Mieke Vandamme
2010 J jnl
Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape.
BMC Bioinform.
Kristof Theys, Koen Deforche, Gertjan Beheydt, Yves Moreau, Kristel Van Laethem, Philippe Lemey, Ricardo Camacho, Soo-Yon Rhee, Robert W. Shafer, Eric Van Wijngaerden, Anne-Mieke Vandamme
2009 J jnl
A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences.
Nucleic Acids Res.
Luiz Carlos Júnior Alcântara, Sharon Cassol, Pieter Libin, Koen Deforche, Oliver G. Pybus, Marc Van Ranst, Bernardo Galvão-Castro, Anne-Mieke Vandamme, Tulio de Oliveira
2008 J jnl
Estimation of an
Bioinform.
Koen Deforche, Ricardo Camacho, Kristel Van Laethem, Philippe Lemey, Andrew Rambaut, Yves Moreau, Anne-Mieke Vandamme
2007 J jnl
Estimating the Relative Contribution of dNTP Pool Imbalance and APOBEC3G/3F Editing to HIV Evolution
J. Comput. Biol.
Koen Deforche, Ricardo Camacho, Kristel Van Laethem, Beth Shapiro, Yves Moreau, Andrew Rambaut, Anne-Mieke Vandamme, Philippe Lemey
2006 J jnl
Analysis of HIV-1
Bioinform.
Koen Deforche, Tomi Silander, Ricardo Camacho, Zehava Grossman, M. A. Soares, Kristel Van Laethem, Rami Kantor, Yves Moreau, Anne-Mieke Vandamme
2005 J jnl
An automated genotyping system for analysis of HIV-1 and other microbial sequences.
Bioinform.
Tulio de Oliveira, Koen Deforche, Sharon Cassol, Mika Salminen, Dimitris Paraskevis, Chris Seebregts, Joke Snoeck, Estrelita J. Janse van Rensburg, Annemarie M. J. Wensing, David A. van de Vijver, Charles A. Boucher, Ricardo Camacho, Anne-Mieke Vandamme
2005 J jnl
SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
Bioinform.
Dimitris Paraskevis, Koen Deforche, Philippe Lemey, Gkikas Magiorkinis, Angelos Hatzakis, Anne-Mieke Vandamme